mRNA_H-elongata_contig175711.4586.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig175711.4586.1
Unique NamemRNA_H-elongata_contig175711.4586.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
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BLAST of mRNA_H-elongata_contig175711.4586.1 vs. uniprot
Match: D8LHL4_ECTSI (DUF3342 domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LHL4_ECTSI)

HSP 1 Score: 98.2 bits (243), Expect = 1.260e-22
Identity = 42/52 (80.77%), Postives = 48/52 (92.31%), Query Frame = 1 
Query:    1 KDFSCERRLLLSEMKYFQSYLMTVSSPYDEIDILVHCDLRVFEWLFEYMHSS 156
            +DF CERRLLL EMKYFQSYL+  SSPYDEIDILVHCD+R+FEWLF+Y+HSS
Sbjct:  280 RDFPCERRLLLREMKYFQSYLVGASSPYDEIDILVHCDVRIFEWLFQYIHSS 331
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BLAST of mRNA_H-elongata_contig175711.4586.1 vs. uniprot
Match: A0A835YQX4_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YQX4_9STRA)

HSP 1 Score: 82.4 bits (202), Expect = 4.450e-17
Identity = 32/51 (62.75%), Postives = 41/51 (80.39%), Query Frame = 1 
Query:    1 KDFSCERRLLLSEMKYFQSYLMTVSSPYDEIDILVHCDLRVFEWLFEYMHS 153
            +DF C R LLL EM+YFQ YL   + P+DE+DILVHCD+R+FEWLF Y+H+
Sbjct:  121 RDFQCNRALLLQEMQYFQGYLSASAGPFDEVDILVHCDVRIFEWLFRYIHA 171
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BLAST of mRNA_H-elongata_contig175711.4586.1 vs. uniprot
Match: T1G6M8_HELRO (DUF3342 domain-containing protein n=1 Tax=Helobdella robusta TaxID=6412 RepID=T1G6M8_HELRO)

HSP 1 Score: 72.0 bits (175), Expect = 9.310e-15
Identity = 30/52 (57.69%), Postives = 38/52 (73.08%), Query Frame = 1 
Query:    1 KDFSCERRLLLSEMKYFQSYLMTVSSPYDEIDILVHCDLRVFEWLFEYMHSS 156
            KDF+C R LLL EMKYFQSYL  V    D+++I VHCDL +F+WL +Y+  S
Sbjct:    1 KDFTCPRELLLKEMKYFQSYLSNVGQQSDDVEISVHCDLDIFDWLIKYVKRS 52
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BLAST of mRNA_H-elongata_contig175711.4586.1 vs. uniprot
Match: F0YN17_AURAN (DUF3342 domain-containing protein n=1 Tax=Aureococcus anophagefferens TaxID=44056 RepID=F0YN17_AURAN)

HSP 1 Score: 73.9 bits (180), Expect = 4.250e-14
Identity = 30/51 (58.82%), Postives = 41/51 (80.39%), Query Frame = 1 
Query:    1 KDFSCERRLLLSEMKYFQSYLMTVSSPYDEIDILVHCDLRVFEWLFEYMHS 153
            +DF+C+R +LL EMKYFQSYL   S  +D+IDI VHCD+ +FEWL +++HS
Sbjct:   33 RDFACDRSVLLEEMKYFQSYLGGDSGSFDDIDISVHCDVHIFEWLVQWIHS 83
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BLAST of mRNA_H-elongata_contig175711.4586.1 vs. uniprot
Match: K3X3Z3_GLOUD (DUF3342 domain-containing protein n=1 Tax=Globisporangium ultimum (strain ATCC 200006 / CBS 805.95 / DAOM BR144) TaxID=431595 RepID=K3X3Z3_GLOUD)

HSP 1 Score: 71.2 bits (173), Expect = 3.770e-13
Identity = 31/52 (59.62%), Postives = 41/52 (78.85%), Query Frame = 1 
Query:    1 KDFSCERRLLLSEMKYFQSYLMTVSSPYDEIDILVHCDLRVFEWLFEYMHSS 156
            KDF C+R LLL++MKYFQ+YL   S+ +DEIDI VHCD+ +FEWL +YM  +
Sbjct:   33 KDFVCDRELLLAKMKYFQAYL-NPSNEHDEIDISVHCDVEIFEWLVKYMQQT 83
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BLAST of mRNA_H-elongata_contig175711.4586.1 vs. uniprot
Match: A0A6A5CFF5_NAEFO (DUF3342 domain-containing protein n=1 Tax=Naegleria fowleri TaxID=5763 RepID=A0A6A5CFF5_NAEFO)

HSP 1 Score: 70.9 bits (172), Expect = 4.030e-13
Identity = 29/52 (55.77%), Postives = 38/52 (73.08%), Query Frame = 1 
Query:    1 KDFSCERRLLLSEMKYFQSYLMTVSSPYDEIDILVHCDLRVFEWLFEYMHSS 156
            KDFSC R LL+SEMKYF+ YLM   +  +EIDI VHCD+ +F+WL +Y+   
Sbjct:  135 KDFSCNRELLMSEMKYFKYYLMQPKAKNEEIDISVHCDVNIFQWLMDYIKKE 186
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BLAST of mRNA_H-elongata_contig175711.4586.1 vs. uniprot
Match: D0NW34_PHYIT (DUF3342 domain-containing protein n=1 Tax=Phytophthora infestans (strain T30-4) TaxID=403677 RepID=D0NW34_PHYIT)

HSP 1 Score: 68.6 bits (166), Expect = 1.160e-12
Identity = 30/51 (58.82%), Postives = 42/51 (82.35%), Query Frame = 1 
Query:    1 KDFSCERRLLLSEMKYFQSYLMTVSSPYDEIDILVHCDLRVFEWLFEYMHS 153
            K+F+C+R LLL++MKYFQ+YL   ++ +DEIDI VHCD+++FE L EYMH 
Sbjct:   39 KEFTCQRGLLLAKMKYFQAYL-NEANEHDEIDISVHCDVKIFELLVEYMHQ 88
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BLAST of mRNA_H-elongata_contig175711.4586.1 vs. uniprot
Match: A0A421GZ31_9STRA (BTB domain-containing protein n=4 Tax=Phytophthora kernoviae TaxID=325452 RepID=A0A421GZ31_9STRA)

HSP 1 Score: 69.7 bits (169), Expect = 1.310e-12
Identity = 32/52 (61.54%), Postives = 40/52 (76.92%), Query Frame = 1 
Query:    1 KDFSCERRLLLSEMKYFQSYLMTVSSPYDEIDILVHCDLRVFEWLFEYMHSS 156
            K+F C+R LLLS+MKYFQ+YL   ++ +DEIDI VHCD+ VFE L EYMH  
Sbjct:   58 KEFQCQRDLLLSKMKYFQTYL-NEANEHDEIDISVHCDVEVFELLMEYMHQQ 108
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BLAST of mRNA_H-elongata_contig175711.4586.1 vs. uniprot
Match: UPI001CFDBA90 (uncharacterized protein n=1 Tax=Naegleria lovaniensis TaxID=51637 RepID=UPI001CFDBA90)

HSP 1 Score: 69.7 bits (169), Expect = 1.320e-12
Identity = 28/52 (53.85%), Postives = 38/52 (73.08%), Query Frame = 1 
Query:    1 KDFSCERRLLLSEMKYFQSYLMTVSSPYDEIDILVHCDLRVFEWLFEYMHSS 156
            KDF+C R LL+SEMKYF+ YLM   +  +EIDI VHCD+ +F+WL +Y+   
Sbjct:  157 KDFTCNRELLMSEMKYFKYYLMQPKAKNEEIDISVHCDVNIFQWLMDYIKKE 208
[Close]
BLAST of mRNA_H-elongata_contig175711.4586.1 vs. uniprot
Match: A0A833WBN7_PHYIN (DUF3342 domain-containing protein n=1 Tax=Phytophthora infestans TaxID=4787 RepID=A0A833WBN7_PHYIN)

HSP 1 Score: 68.6 bits (166), Expect = 3.300e-12
Identity = 30/51 (58.82%), Postives = 42/51 (82.35%), Query Frame = 1 
Query:    1 KDFSCERRLLLSEMKYFQSYLMTVSSPYDEIDILVHCDLRVFEWLFEYMHS 153
            K+F+C+R LLL++MKYFQ+YL   ++ +DEIDI VHCD+++FE L EYMH 
Sbjct:   39 KEFTCQRGLLLAKMKYFQAYL-NEANEHDEIDISVHCDVKIFELLVEYMHQ 88
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig175711.4586.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LHL4_ECTSI1.260e-2280.77DUF3342 domain-containing protein n=1 Tax=Ectocarp... [more]
A0A835YQX4_9STRA4.450e-1762.75Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
T1G6M8_HELRO9.310e-1557.69DUF3342 domain-containing protein n=1 Tax=Helobdel... [more]
F0YN17_AURAN4.250e-1458.82DUF3342 domain-containing protein n=1 Tax=Aureococ... [more]
K3X3Z3_GLOUD3.770e-1359.62DUF3342 domain-containing protein n=1 Tax=Globispo... [more]
A0A6A5CFF5_NAEFO4.030e-1355.77DUF3342 domain-containing protein n=1 Tax=Naegleri... [more]
D0NW34_PHYIT1.160e-1258.82DUF3342 domain-containing protein n=1 Tax=Phytopht... [more]
A0A421GZ31_9STRA1.310e-1261.54BTB domain-containing protein n=4 Tax=Phytophthora... [more]
UPI001CFDBA901.320e-1253.85uncharacterized protein n=1 Tax=Naegleria lovanien... [more]
A0A833WBN7_PHYIN3.300e-1258.82DUF3342 domain-containing protein n=1 Tax=Phytopht... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig175711contigH-elongata_contig175711:369..1051 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score98.2
Seed ortholog evalue1.2e-18
Seed eggNOG ortholog2880.D8LHL4
Preferred nameKIAA1841
EggNOG free text desc.Domain of unknown function (DUF3342)
EggNOG OGs28J1Y@1,2QRE4@2759
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Hectar predicted targeting categoryno signal peptide or anchor
Exons2
Model size156
Cds size156
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930018.757635-CDS-H-elongata_contig175711:368..4371622930018.757635-CDS-H-elongata_contig175711:368..437Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig175711 369..437 +
1691679248.2774239-CDS-H-elongata_contig175711:368..4371691679248.2774239-CDS-H-elongata_contig175711:368..437Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig175711 369..437 +
1622930018.8098872-CDS-H-elongata_contig175711:964..10511622930018.8098872-CDS-H-elongata_contig175711:964..1051Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig175711 965..1051 +
1691679248.2878518-CDS-H-elongata_contig175711:964..10511691679248.2878518-CDS-H-elongata_contig175711:964..1051Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig175711 965..1051 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig175711.4586.1prot_H-elongata_contig175711.4586.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig175711 369..1051 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig175711.4586.1

>prot_H-elongata_contig175711.4586.1 ID=prot_H-elongata_contig175711.4586.1|Name=mRNA_H-elongata_contig175711.4586.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=52bp
KDFSCERRLLLSEMKYFQSYLMTVSSPYDEIDILVHCDLRVFEWLFEYMH
SS
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mRNA from alignment at H-elongata_contig175711:369..1051+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig175711.4586.1 ID=mRNA_H-elongata_contig175711.4586.1|Name=mRNA_H-elongata_contig175711.4586.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=683bp|location=Sequence derived from alignment at H-elongata_contig175711:369..1051+ (Himanthalia elongata Himel1 dioecious)
AAAGATTTTTCTTGCGAGCGAAGGCTGTTACTAAGCGAGATGAAGTATTT
TCAATCCTACCTAATGACTGTGAGTGAGCGCGTTCCTCGCTGCGCTTTCC
ACTGAGGCGGAAGTGCCGTGTGCAAAACGTGCCGAACATATTTCGATTTT
GCCGCGCACAGTGTGTACATAGGTGTACGTGTGTCTTTTAAATGAAGTTT
GGGGGTGTTGGTGTATATTGGTGTGCATGTCTCCTTTCGCCGTGGGTGCC
ACTGTGTTTGTGGGGGTAGGCCTTCCCGCTTGTGAGCGCGCGTGCTCGTA
TTGCTATCAAGTGTCCCTCAATGAATGGGTGCCTCCTCTGGTGGCCTCTT
ACGGACGCTGTTCCCGTCGCGAGGTAGTACAGATAGGTCGCCCACGATAA
CCCGACAGACGCCAACATCGTTAAGACAGCAGCTAAGGATTTGTTCATAC
TATCAAGCACACGGATTTCCGTCAGCACCCCTCGGCTCGGCCTTCCAACC
CCTCCTCCCGCCGCCCCCCCCGTGCCACAGTCGCTAACGTCTGAAAAACT
AAATATATCGTTCGTTCCTCGCATCCACATCAACGCGTTACACAAGGTCT
CGAGCCCTTACGACGAGATCGACATCCTGGTGCACTGCGATCTGCGCGTC
TTCGAGTGGCTGTTTGAATACATGCACAGCAGT
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Coding sequence (CDS) from alignment at H-elongata_contig175711:369..1051+

>mRNA_H-elongata_contig175711.4586.1 ID=mRNA_H-elongata_contig175711.4586.1|Name=mRNA_H-elongata_contig175711.4586.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=312bp|location=Sequence derived from alignment at H-elongata_contig175711:369..1051+ (Himanthalia elongata Himel1 dioecious)
AAAGATTTTTCTTGCGAGCGAAGGCTGTTACTAAGCGAGATGAAGTATTT
TCAATCCTACCTAATGACTAAAGATTTTTCTTGCGAGCGAAGGCTGTTAC
TAAGCGAGATGAAGTATTTTCAATCCTACCTAATGACTGTCTCGAGCCCT
TACGACGAGATCGACATCCTGGTGCACTGCGATCTGCGCGTCTTCGAGTG
GCTGTTTGAATACATGCACAGCAGTGTCTCGAGCCCTTACGACGAGATCG
ACATCCTGGTGCACTGCGATCTGCGCGTCTTCGAGTGGCTGTTTGAATAC
ATGCACAGCAGT
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