mRNA_H-elongata_contig175675.4583.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig175675.4583.1
Unique NamemRNA_H-elongata_contig175675.4583.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
[Close]
BLAST of mRNA_H-elongata_contig175675.4583.1 vs. uniprot
Match: A0A6H5KH94_9PHAE (GH16 domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5KH94_9PHAE)

HSP 1 Score: 155 bits (393), Expect = 6.430e-43
Identity = 66/76 (86.84%), Postives = 72/76 (94.74%), Query Frame = 1 
Query:    1 GGIVEMRAKLPGEHDIGGLWPAFWILGNLGRATYEASTNLIWPWSYDKCDPKKQRAQEISACNKVNHFGMHPYQVR 228
            GGI+E+ AKLPGEH+IGGLWPAFW+LGNLGRATYEASTNLIWPWSYDKCDPK QRAQEISACNK+NHFG+H YQ R
Sbjct:  192 GGIIEIDAKLPGEHNIGGLWPAFWLLGNLGRATYEASTNLIWPWSYDKCDPKLQRAQEISACNKINHFGLHGYQGR 267
[Close]
BLAST of mRNA_H-elongata_contig175675.4583.1 vs. uniprot
Match: A0A835YN37_9STRA (Beta-1,6-glucan active enzyme, family GH16 n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YN37_9STRA)

HSP 1 Score: 139 bits (349), Expect = 7.420e-37
Identity = 59/76 (77.63%), Postives = 67/76 (88.16%), Query Frame = 1 
Query:    1 GGIVEMRAKLPGEHDIGGLWPAFWILGNLGRATYEASTNLIWPWSYDKCDPKKQRAQEISACNKVNHFGMHPYQVR 228
            GGI+EMRA LPGEH+IGGLWPAFW+LGNLGRATYEASTNL+WPWSY++C+ K Q  QEISACN V HFGMH +Q R
Sbjct:  150 GGIIEMRAILPGEHNIGGLWPAFWLLGNLGRATYEASTNLVWPWSYNRCNRKLQLGQEISACNGVKHFGMHAHQGR 225
[Close]
BLAST of mRNA_H-elongata_contig175675.4583.1 vs. uniprot
Match: K0TJA7_THAOC (GH16 domain-containing protein n=1 Tax=Thalassiosira oceanica TaxID=159749 RepID=K0TJA7_THAOC)

HSP 1 Score: 125 bits (315), Expect = 1.580e-32
Identity = 53/76 (69.74%), Postives = 62/76 (81.58%), Query Frame = 1 
Query:    1 GGIVEMRAKLPGEHDIGGLWPAFWILGNLGRATYEASTNLIWPWSYDKCDPKKQRAQEISACNKVNHFGMHPYQVR 228
            GGI+E+   LPGE DIGGLWPA W+LGNLGRATYE STN++WPWSYD CD KKQ +Q +SACNK NHFG++  Q R
Sbjct:  144 GGILEVDLILPGEPDIGGLWPAAWLLGNLGRATYEGSTNMLWPWSYDDCDRKKQESQMVSACNKANHFGLNKNQGR 219
[Close]
BLAST of mRNA_H-elongata_contig175675.4583.1 vs. uniprot
Match: A0A7S0Y7A0_9STRA (Hypothetical protein n=1 Tax=Pseudo-nitzschia delicatissima TaxID=44447 RepID=A0A7S0Y7A0_9STRA)

HSP 1 Score: 126 bits (317), Expect = 1.740e-32
Identity = 55/76 (72.37%), Postives = 63/76 (82.89%), Query Frame = 1 
Query:    1 GGIVEMRAKLPGEHDIGGLWPAFWILGNLGRATYEASTNLIWPWSYDKCDPKKQRAQEISACNKVNHFGMHPYQVR 228
            GGI+E+   LPG+  IGGLWPA W+LGNLGRATYEASTN IWPWS++KCD K Q AQ ISACN+ NHFGMHP+Q R
Sbjct:   29 GGIIEVDVILPGDPLIGGLWPAIWMLGNLGRATYEASTNNIWPWSFNKCDRKLQPAQAISACNEQNHFGMHPFQGR 104
[Close]
BLAST of mRNA_H-elongata_contig175675.4583.1 vs. uniprot
Match: B7G6N6_PHATC (Predicted protein n=2 Tax=Phaeodactylum tricornutum TaxID=2850 RepID=B7G6N6_PHATC)

HSP 1 Score: 124 bits (312), Expect = 1.610e-31
Identity = 54/76 (71.05%), Postives = 61/76 (80.26%), Query Frame = 1 
Query:    1 GGIVEMRAKLPGEHDIGGLWPAFWILGNLGRATYEASTNLIWPWSYDKCDPKKQRAQEISACNKVNHFGMHPYQVR 228
            GGIVE+    PGE  IGGLWPA W+LGNLGRATYEASTN IWPWS+D CD + Q AQ ISACN+ NH+GMHP+Q R
Sbjct:  192 GGIVEVDVVFPGEPFIGGLWPAVWMLGNLGRATYEASTNNIWPWSFDTCDREMQDAQAISACNRENHYGMHPFQGR 267
[Close]
BLAST of mRNA_H-elongata_contig175675.4583.1 vs. uniprot
Match: A0A482SXU5_9ARCH (GH16 domain-containing protein n=1 Tax=archaeon TaxID=1906665 RepID=A0A482SXU5_9ARCH)

HSP 1 Score: 120 bits (301), Expect = 3.040e-31
Identity = 49/76 (64.47%), Postives = 62/76 (81.58%), Query Frame = 1 
Query:    1 GGIVEMRAKLPGEHDIGGLWPAFWILGNLGRATYEASTNLIWPWSYDKCDPKKQRAQEISACNKVNHFGMHPYQVR 228
            GGI+E+  + PG HDIGGLWPA W+LGNLGRAT+EASTNL+WPWSY+ CD   Q+AQEIS C+  +HFG++ +Q R
Sbjct:  140 GGILEIDVQFPGRHDIGGLWPAVWLLGNLGRATFEASTNLMWPWSYEVCDRSLQKAQEISGCDITSHFGLNAHQGR 215
[Close]
BLAST of mRNA_H-elongata_contig175675.4583.1 vs. uniprot
Match: A0A7S1ZB15_TRICV (Hypothetical protein (Fragment) n=1 Tax=Trieres chinensis TaxID=1514140 RepID=A0A7S1ZB15_TRICV)

HSP 1 Score: 121 bits (303), Expect = 1.160e-30
Identity = 52/76 (68.42%), Postives = 61/76 (80.26%), Query Frame = 1 
Query:    1 GGIVEMRAKLPGEHDIGGLWPAFWILGNLGRATYEASTNLIWPWSYDKCDPKKQRAQEISACNKVNHFGMHPYQVR 228
            GGIVE+   LPG+  IGGLWPA W+LGN+GRATYEASTN IWPWSYD+CD   QR Q ISAC++ NH+GM+P Q R
Sbjct:  153 GGIVEVDIVLPGDPYIGGLWPAIWLLGNIGRATYEASTNNIWPWSYDECDRSLQRKQSISACDEANHYGMNPRQGR 228
[Close]
BLAST of mRNA_H-elongata_contig175675.4583.1 vs. uniprot
Match: A0A1E7FFY3_9STRA (Beta-glucan synthase-like protein n=1 Tax=Fragilariopsis cylindrus CCMP1102 TaxID=635003 RepID=A0A1E7FFY3_9STRA)

HSP 1 Score: 122 bits (305), Expect = 1.360e-30
Identity = 54/76 (71.05%), Postives = 61/76 (80.26%), Query Frame = 1 
Query:    1 GGIVEMRAKLPGEHDIGGLWPAFWILGNLGRATYEASTNLIWPWSYDKCDPKKQRAQEISACNKVNHFGMHPYQVR 228
            GGIVE+   LPG+  IGGLWPA W+LGNLGRATYEASTN IWPWS+D CD K Q AQ+ISACN  NH+GM+ YQ R
Sbjct:  155 GGIVEVDVILPGDPFIGGLWPAIWMLGNLGRATYEASTNNIWPWSFDTCDRKLQPAQKISACNSQNHYGMNAYQGR 230
[Close]
BLAST of mRNA_H-elongata_contig175675.4583.1 vs. uniprot
Match: A0A1Z5KN53_FISSO (GH16 domain-containing protein n=2 Tax=Fistulifera solaris TaxID=1519565 RepID=A0A1Z5KN53_FISSO)

HSP 1 Score: 121 bits (304), Expect = 1.890e-30
Identity = 53/76 (69.74%), Postives = 60/76 (78.95%), Query Frame = 1 
Query:    1 GGIVEMRAKLPGEHDIGGLWPAFWILGNLGRATYEASTNLIWPWSYDKCDPKKQRAQEISACNKVNHFGMHPYQVR 228
            GGIVE+    PGE  IGGLWPA W+LGNLGRATYE STN +WPWSY+KCD + Q+AQ ISACN  NH+GMHP Q R
Sbjct:  147 GGIVEVDVIFPGEAYIGGLWPAIWMLGNLGRATYEPSTNNLWPWSYNKCDRELQQAQTISACNAQNHYGMHPNQGR 222
[Close]
BLAST of mRNA_H-elongata_contig175675.4583.1 vs. uniprot
Match: A0A7S2EFL5_TRICV (Hypothetical protein n=1 Tax=Trieres chinensis TaxID=1514140 RepID=A0A7S2EFL5_TRICV)

HSP 1 Score: 121 bits (303), Expect = 2.610e-30
Identity = 52/76 (68.42%), Postives = 61/76 (80.26%), Query Frame = 1 
Query:    1 GGIVEMRAKLPGEHDIGGLWPAFWILGNLGRATYEASTNLIWPWSYDKCDPKKQRAQEISACNKVNHFGMHPYQVR 228
            GGIVE+   LPG+  IGGLWPA W+LGN+GRATYEASTN IWPWSYD+CD   QR Q ISAC++ NH+GM+P Q R
Sbjct:  153 GGIVEVDIVLPGDPYIGGLWPAIWLLGNIGRATYEASTNNIWPWSYDECDRSLQRKQSISACDEANHYGMNPRQGR 228
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig175675.4583.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5KH94_9PHAE6.430e-4386.84GH16 domain-containing protein n=2 Tax=Ectocarpus ... [more]
A0A835YN37_9STRA7.420e-3777.63Beta-1,6-glucan active enzyme, family GH16 n=1 Tax... [more]
K0TJA7_THAOC1.580e-3269.74GH16 domain-containing protein n=1 Tax=Thalassiosi... [more]
A0A7S0Y7A0_9STRA1.740e-3272.37Hypothetical protein n=1 Tax=Pseudo-nitzschia deli... [more]
B7G6N6_PHATC1.610e-3171.05Predicted protein n=2 Tax=Phaeodactylum tricornutu... [more]
A0A482SXU5_9ARCH3.040e-3164.47GH16 domain-containing protein n=1 Tax=archaeon Ta... [more]
A0A7S1ZB15_TRICV1.160e-3068.42Hypothetical protein (Fragment) n=1 Tax=Trieres ch... [more]
A0A1E7FFY3_9STRA1.360e-3071.05Beta-glucan synthase-like protein n=1 Tax=Fragilar... [more]
A0A1Z5KN53_FISSO1.890e-3069.74GH16 domain-containing protein n=2 Tax=Fistulifera... [more]
A0A7S2EFL5_TRICV2.610e-3068.42Hypothetical protein n=1 Tax=Trieres chinensis Tax... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig175675contigH-elongata_contig175675:492..1082 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score148.3
Seed ortholog evalue1.4e-33
Seed eggNOG ortholog2880.D8LC98
KEGG koko:K21850
EggNOG free text desc.Beta-glucan synthesis-associated protein (SKN1)
EggNOG OGs2QVQE@2759,COG2273@1
COG Functional cat.G
CAZyGH16
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko04131
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionBeta-1,6-glucan active enzyme, family GH16
Ec32 orthologEc-14_005560.1
Exons2
Model size228
Cds size213
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig175675.4583.1prot_H-elongata_contig175675.4583.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig175675 507..1082 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930018.5594347-UTR-H-elongata_contig175675:491..5061622930018.5594347-UTR-H-elongata_contig175675:491..506Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig175675 492..506 +
1691679248.1903925-UTR-H-elongata_contig175675:491..5061691679248.1903925-UTR-H-elongata_contig175675:491..506Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig175675 492..506 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930018.5753655-CDS-H-elongata_contig175675:506..6131622930018.5753655-CDS-H-elongata_contig175675:506..613Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig175675 507..613 +
1691679248.2020452-CDS-H-elongata_contig175675:506..6131691679248.2020452-CDS-H-elongata_contig175675:506..613Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig175675 507..613 +
1622930018.5902028-CDS-H-elongata_contig175675:976..10821622930018.5902028-CDS-H-elongata_contig175675:976..1082Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig175675 977..1082 +
1691679248.2156389-CDS-H-elongata_contig175675:976..10821691679248.2156389-CDS-H-elongata_contig175675:976..1082Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig175675 977..1082 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig175675.4583.1

>prot_H-elongata_contig175675.4583.1 ID=prot_H-elongata_contig175675.4583.1|Name=mRNA_H-elongata_contig175675.4583.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=71bp
MRAKLPGEHDIGGLWPAFWILGNLGRATYEASTNLIWPWSYDKCDPKKQR
AQEISACNKVNHFGMHPYQVR
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mRNA from alignment at H-elongata_contig175675:492..1082+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig175675.4583.1 ID=mRNA_H-elongata_contig175675.4583.1|Name=mRNA_H-elongata_contig175675.4583.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=591bp|location=Sequence derived from alignment at H-elongata_contig175675:492..1082+ (Himanthalia elongata Himel1 dioecious)
GGCGGAATCGTGGAGATGAGAGCCAAGCTTCCGGGGGAGCACGACATCGG
CGGGCTATGGCCCGCTTTCTGGATTCTGGGAAACCTCGGCCGTGCAACGT
ACGAGGCTTCAACCAACCTCATGTGAGTCCCACTGCTGCGGTGGTGTACC
CAAAACGCTTTTCTTCTCGGTTAATATCAGACTCGCCTCTCGGGAGAGGT
CTGTCGCTATGCTTTCTCCTAGATGTTTTCCCACGAAATTAACCCCTTCT
CGCACGCCGGCGCCTGCCTCCGATCGGACGTTATTTCCTCTCCGGCAGGC
GCAAGAACCCCTTCCATGTTTCTTTGCATCATCGCTTTGTATCATCGCGA
GACCCCTTGTATATTTTCTGACAACGACCCCCCTTCTCCCCCCCCCCGCC
ATCTTTTTCTATGACTTGAATACGCTATCTCCTTCCCCCCACACACCCCT
GGAAAAAACGCCTCGATTCTCTATAATACTTGCAGCTGGCCCTGGAGCTA
CGATAAATGCGACCCAAAGAAGCAGCGAGCGCAGGAAATCAGCGCCTGCA
ACAAAGTCAACCACTTCGGCATGCACCCGTACCAGGTGCGG
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Coding sequence (CDS) from alignment at H-elongata_contig175675:492..1082+

>mRNA_H-elongata_contig175675.4583.1 ID=mRNA_H-elongata_contig175675.4583.1|Name=mRNA_H-elongata_contig175675.4583.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=426bp|location=Sequence derived from alignment at H-elongata_contig175675:492..1082+ (Himanthalia elongata Himel1 dioecious)
ATGAGAGCCAAGCTTCCGGGGGAGCACGACATCGGCGGGCTATGGCCCGC
TTTCTGGATTCTGGGAAACCTCGGCCGTGCAACGTACGAGGCTTCAACCA
ACCTCATATGAGAGCCAAGCTTCCGGGGGAGCACGACATCGGCGGGCTAT
GGCCCGCTTTCTGGATTCTGGGAAACCTCGGCCGTGCAACGTACGAGGCT
TCAACCAACCTCATCTGGCCCTGGAGCTACGATAAATGCGACCCAAAGAA
GCAGCGAGCGCAGGAAATCAGCGCCTGCAACAAAGTCAACCACTTCGGCA
TGCACCCGTACCAGGTGCGGCTGGCCCTGGAGCTACGATAAATGCGACCC
AAAGAAGCAGCGAGCGCAGGAAATCAGCGCCTGCAACAAAGTCAACCACT
TCGGCATGCACCCGTACCAGGTGCGG
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