mRNA_H-elongata_contig17543.4574.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig17543.4574.1
Unique NamemRNA_H-elongata_contig17543.4574.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig17543.4574.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig17543contigH-elongata_contig17543:1355..1979 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size515
Cds size471
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig17543.4574.1prot_H-elongata_contig17543.4574.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig17543 1399..1979 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930017.4630127-UTR-H-elongata_contig17543:1354..13981622930017.4630127-UTR-H-elongata_contig17543:1354..1398Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig17543 1355..1398 +
1691679247.6653502-UTR-H-elongata_contig17543:1354..13981691679247.6653502-UTR-H-elongata_contig17543:1354..1398Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig17543 1355..1398 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930017.4786212-CDS-H-elongata_contig17543:1398..16031622930017.4786212-CDS-H-elongata_contig17543:1398..1603Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig17543 1399..1603 +
1691679247.6751-CDS-H-elongata_contig17543:1398..16031691679247.6751-CDS-H-elongata_contig17543:1398..1603Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig17543 1399..1603 +
1622930017.4927354-CDS-H-elongata_contig17543:1713..19791622930017.4927354-CDS-H-elongata_contig17543:1713..1979Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig17543 1714..1979 +
1691679247.684549-CDS-H-elongata_contig17543:1713..19791691679247.684549-CDS-H-elongata_contig17543:1713..1979Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig17543 1714..1979 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig17543.4574.1

>prot_H-elongata_contig17543.4574.1 ID=prot_H-elongata_contig17543.4574.1|Name=mRNA_H-elongata_contig17543.4574.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=157bp
MPPGSGYSFKNMRSFYQSHLTAISHHAQQVESDYFVGTQKSTYRRGKKTA
APSSHSGCGKIETYNNWSMMKSGLTRWRLTVEMDTVAENGRIERIPGVST
RLSMGSEKEHADAGRDGRTRLARPKSQARTGTVKIIFPLQLNTSRRKPNP
ADPAKCA
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mRNA from alignment at H-elongata_contig17543:1355..1979+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig17543.4574.1 ID=mRNA_H-elongata_contig17543.4574.1|Name=mRNA_H-elongata_contig17543.4574.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=625bp|location=Sequence derived from alignment at H-elongata_contig17543:1355..1979+ (Himanthalia elongata Himel1 dioecious)
GTAATACGTGGTATATGTAACATATATTTAATTTCCTGAAAAAAATGCCG
CCGGGGTCAGGCTATTCATTCAAAAACATGCGAAGTTTTTACCAATCCCA
CCTAACTGCTATCTCACATCATGCCCAACAAGTGGAGAGCGATTACTTCG
TGGGTACACAAAAATCGACCTATCGACGAGGGAAAAAGACCGCTGCCCCC
TCTTCCCATAGTGGGTGTGGGAAAATAGAGACGTACAATAATTGGTCCAT
GGGGTTACCTGAATATGTTGCACCCGTTTCTAAAATTACCTTGAGGACTA
TAGGCTCAGTGGCGGCGGACTCTCGGTAGTAAACGCCATCGGTACGCAAT
TGCGTGACCTGATGAAATCAGGATTGACCCGATGGCGGTTGACGGTAGAG
ATGGACACCGTCGCGGAAAACGGGAGGATTGAGAGAATCCCGGGAGTAAG
CACCAGATTGAGTATGGGGTCAGAGAAAGAGCACGCTGACGCGGGACGGG
ACGGCCGAACCCGTCTCGCAAGACCAAAATCTCAGGCACGAACGGGGACT
GTGAAAATTATTTTCCCTCTTCAGCTGAACACGAGCAGAAGGAAACCAAA
TCCGGCTGATCCTGCTAAATGTGCG
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Coding sequence (CDS) from alignment at H-elongata_contig17543:1355..1979+

>mRNA_H-elongata_contig17543.4574.1 ID=mRNA_H-elongata_contig17543.4574.1|Name=mRNA_H-elongata_contig17543.4574.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=942bp|location=Sequence derived from alignment at H-elongata_contig17543:1355..1979+ (Himanthalia elongata Himel1 dioecious)
ATGCCGCCGGGGTCAGGCTATTCATTCAAAAACATGCGAAGTTTTTACCA
ATCCCACCTAACTGCTATCTCACATCATGCCCAACAAGTGGAGAGCGATT
ACTTCGTGGGTACACAAAAATCGACCTATCGACGAGGGAAAAAGACCGCT
GCCCCCTCTTCCCATAGTGGGTGTGGGAAAATAGAGACGTACAATAATTG
GTCCAATGCCGCCGGGGTCAGGCTATTCATTCAAAAACATGCGAAGTTTT
TACCAATCCCACCTAACTGCTATCTCACATCATGCCCAACAAGTGGAGAG
CGATTACTTCGTGGGTACACAAAAATCGACCTATCGACGAGGGAAAAAGA
CCGCTGCCCCCTCTTCCCATAGTGGGTGTGGGAAAATAGAGACGTACAAT
AATTGGTCCATGATGAAATCAGGATTGACCCGATGGCGGTTGACGGTAGA
GATGGACACCGTCGCGGAAAACGGGAGGATTGAGAGAATCCCGGGAGTAA
GCACCAGATTGAGTATGGGGTCAGAGAAAGAGCACGCTGACGCGGGACGG
GACGGCCGAACCCGTCTCGCAAGACCAAAATCTCAGGCACGAACGGGGAC
TGTGAAAATTATTTTCCCTCTTCAGCTGAACACGAGCAGAAGGAAACCAA
ATCCGGCTGATCCTGCTAAATGTGCGTGATGAAATCAGGATTGACCCGAT
GGCGGTTGACGGTAGAGATGGACACCGTCGCGGAAAACGGGAGGATTGAG
AGAATCCCGGGAGTAAGCACCAGATTGAGTATGGGGTCAGAGAAAGAGCA
CGCTGACGCGGGACGGGACGGCCGAACCCGTCTCGCAAGACCAAAATCTC
AGGCACGAACGGGGACTGTGAAAATTATTTTCCCTCTTCAGCTGAACACG
AGCAGAAGGAAACCAAATCCGGCTGATCCTGCTAAATGTGCG
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