mRNA_H-elongata_contig17539.4573.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig17539.4573.1
Unique NamemRNA_H-elongata_contig17539.4573.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
[Close]
BLAST of mRNA_H-elongata_contig17539.4573.1 vs. uniprot
Match: D8LNE8_ECTSI (Ankyrin n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LNE8_ECTSI)

HSP 1 Score: 496 bits (1276), Expect = 4.470e-169
Identity = 259/447 (57.94%), Postives = 309/447 (69.13%), Query Frame = 1 
Query:    1 QVGYIITKLFGVVPLLLEDLPFEEVIAELKAAPRPHKLEFMRYDMRFNRLTLEWETLEEVRRQGKYVRDPRDEMETPLIVAVIRGATTSVRWLLGKGAKLDTLDRARRTPLMH-------------------------------------------------------------------AILSKSNEMASLLIDYPVALRAVDVQWGWTALHCAAHVGMVEVVDILLEKKVSPYATSKIGQTPLDVARRAHQLKTTLLFESFLKEEPAHEVIVDGGAHIWQGSHNAAHPAWISDNGFQCVVTIADPRFPEKRICWLDDDEEIDHFRVEAEVDDDDTSSRSWNNLTQHVRAIINFLYKAVRRRKKILVHCRNGTSTSVAVIAVYRLLKHGVGIRNTLSDIASTRGDSMDLSPAIATGLQQLQEDFAREKEKRLVERVRLMPLMSLGF 1140
            +VG+IIT+LFG+V L LED+PFEEV+ ELKAAPRPH LEF+RYDM FNRLTL+WETLEEVR+QGKYVRD R+E     + A   G    ++  L +G  +++ D    T  MH                                                                   AILSKS  MA+L +DY VAL+A DVQWGWTALHCAAHVGMV+VV+ LL K+ SPYA SKIGQTPLDVA RA Q+KTT L E+FL+ EPAHEVI + GA+IWQGSH AAHP W SD GF+C+++I DPRFP+K++ WL+DD ++ H RVEAEVDD+DTS R+WNN+ QH R II+FLY AVRRRKKILVHCRNG STSVA++  YRLLKHGVG+RNTLS IA  RG+SMDLSPA+A GLQQLQEDFA+EKEKRLVER R  P++SLGF
Sbjct:  200 RVGFIITRLFGIVNLNLEDVPFEEVLLELKAAPRPHTLEFLRYDMNFNRLTLKWETLEEVRQQGKYVRDAREE-RLYFVKACAEGDIDRLQIRLDRGEDVESTDLQGNTG-MHVAAANSXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAILSKSEVMAALFMDYSVALQATDVQWGWTALHCAAHVGMVKVVENLLGKRASPYAESKIGQTPLDVASRARQIKTTALLEAFLRAEPAHEVIAEAGANIWQGSHAAAHPVWASDQGFECILSIVDPRFPDKKLGWLEDDGDVRHLRVEAEVDDEDTSPRAWNNIAQHTRVIISFLYTAVRRRKKILVHCRNGRSTSVAMLTAYRLLKHGVGVRNTLSTIARARGESMDLSPAMAAGLQQLQEDFAKEKEKRLVERARTAPILSLGF 644
[Close]
BLAST of mRNA_H-elongata_contig17539.4573.1 vs. uniprot
Match: A0A7S2S5Z2_9STRA (Hypothetical protein n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2S5Z2_9STRA)

HSP 1 Score: 69.7 bits (169), Expect = 3.170e-9
Identity = 43/126 (34.13%), Postives = 70/126 (55.56%), Query Frame = 1 
Query:    7 GYIITKLFGVVPLLLEDLPFEEVIAELKAAPRPHKLEFMRYDMRFNRLTLEWETLEEVRRQGKYVRDPRDEMETPLIVAVIRGATTSVRWLLGKGAKLDTLDRARRTPLMHAILSKSNEMASLLID 384
            G+I+T+   V     E+L F +++  ++ +  PH+LEF RYD R N L+  WE+L+E+R QGK+V DPR + +   + A  RG    +   L +G  +D  D+++ T   HA  +   E   LL+ 
Sbjct:  221 GFIVTR---VNRSATENLDFPDILTVIEESKPPHELEFRRYDYRQNMLSGRWESLQELRAQGKFVEDPRVKQQL-FVDAGRRGDVVDLDRSLVRGMNVDASDQSQCTAFHHACANGHFEAMQLLLS 342
[Close]
BLAST of mRNA_H-elongata_contig17539.4573.1 vs. uniprot
Match: UPI00188DED7C (ankyrin repeat domain-containing protein n=1 Tax=Noviherbaspirillum malthae TaxID=1260987 RepID=UPI00188DED7C)

HSP 1 Score: 58.2 bits (139), Expect = 6.330e-6
Identity = 38/102 (37.25%), Postives = 58/102 (56.86%), Query Frame = 1 
Query:  232 LIVAVIRGATTSVRWLLG-KGAKLDTLDRARRTPLMHAILSKSNEMASLLIDYPVALRAVDVQWGWTALHCAAHVGMVEVVDILLEKKVSPYATSKIGQTPL 534
            L+ A   GA  ++  LL  + A ++T+DR+R+T L+HAIL+   E A  L+D  +  R +  + G  ALH AA +G+V V+D LL+      A+     TPL
Sbjct:   18 LLAAASAGAVDTLALLLDERDANINTVDRSRQTALVHAILAGCEECAKFLLDRGIDWR-IQNKRGLRALHLAAGMGLVSVIDRLLDAGDDVNASRANTDTPL 118
[Close]
BLAST of mRNA_H-elongata_contig17539.4573.1 vs. uniprot
Match: A0A7Y7PAM1_9BACT (Ankyrin repeat domain-containing protein n=1 Tax=Bacteroidetes bacterium TaxID=1898104 RepID=A0A7Y7PAM1_9BACT)

HSP 1 Score: 58.9 bits (141), Expect = 1.040e-5
Identity = 42/130 (32.31%), Postives = 65/130 (50.00%), Query Frame = 1 
Query:  223 ETPLIVAVIRGATTSVRWLLGK-GAKLDTLDRARRTPLMHAILSKSNEMASLLIDYPVALRAVDVQWGWTALHCAAHVGMVEVVDILLEKKVSPYATSKIGQTPL-DVARRAHQLKTTLLFESFLKEEPA 606
            ET L +A   G    V+ L+ K GA L+       TPLM+A+ S+S ++AS L+     L   +  WGWT +  AA+ G   +V+ L+E+KV+       G + +   A   +     LL E+  K+E A
Sbjct:  606 ETALHMAAKIGNLEIVKVLVEKYGANLNACTVRNETPLMYALKSQSEDVASYLLSKDPILGKQEEVWGWTEILAAAYRGYTSIVEELIERKVNLNEQDYTGSSAIFTAAENGNNEILNLLLEANAKQEIA 735
[Close]
BLAST of mRNA_H-elongata_contig17539.4573.1 vs. uniprot
Match: UPI001F617B79 (ankyrin repeat domain-containing protein n=1 Tax=Sphingopyxis sp. YF1 TaxID=2482763 RepID=UPI001F617B79)

HSP 1 Score: 55.8 bits (133), Expect = 1.710e-5
Identity = 42/110 (38.18%), Postives = 55/110 (50.00%), Query Frame = 1 
Query:  223 ETPLIVAVIRGATTSVRWLLGKGAKLDTLDRARRTPLMHAILSKSNEMASLLIDYPVALRAVDVQWGWTALHCAAHVGMVEVVDILLEKKVSPYATSKI-GQTPLDVARR 549
            ET L + V R  TT + +LLGKGA     DR   TPLMHA L  S EMA  L+D    +   + + G TAL  A       VV +L+ +  +P     I G +  D A+R
Sbjct:   64 ETALAIVVKRRDTTWLAFLLGKGADPSIADRQGVTPLMHAALLNSTEMAEELLDGKAPVDQTNRR-GETALILAVQAKNSGVVRLLVRRGANPDKADHIAGMSARDYAKR 172
[Close]
BLAST of mRNA_H-elongata_contig17539.4573.1 vs. uniprot
Match: UPI001F58BD4B (ankyrin repeat domain-containing protein n=1 Tax=Ignatzschineria sp. HR5S32 TaxID=2923279 RepID=UPI001F58BD4B)

HSP 1 Score: 56.6 bits (135), Expect = 3.300e-5
Identity = 39/118 (33.05%), Postives = 59/118 (50.00%), Query Frame = 1 
Query:  226 TPLIVAVIRGATTSVRWLLGKGAKLDTLDRARRTPLMHAILSKSNEMASLLIDYPVALRAVDVQWGWTALHCAAHVGMVEVVDILLEKKVSPYATSKIGQTPLDVARRAHQLKTTLLF 579
            TP+  A+       ++ L  +G  ++    ++ TPLM AI  KS +   +L+     +  VD Q G++ALH AA +G+VEVV  LL +   PY  S  G TP  +A   +      LF
Sbjct:  251 TPIHWALYTDNFEMIKALHEQGVNINAFSLSQTTPLMDAIELKSEKGIEMLLSLKADISLVDQQ-GFSALHRAAAMGLVEVVKKLLIEGADPYQESVQGFTPKALAAERNHSAIVALF 367
[Close]
BLAST of mRNA_H-elongata_contig17539.4573.1 vs. uniprot
Match: UPI0003318369 (ankyrin repeat domain-containing protein 16 n=1 Tax=Sorex araneus TaxID=42254 RepID=UPI0003318369)

HSP 1 Score: 56.2 bits (134), Expect = 4.290e-5
Identity = 44/132 (33.33%), Postives = 65/132 (49.24%), Query Frame = 1 
Query:  217 EMETPLIVAVIRGATTSVRWLLGKGAKLDTLDRARRTPLMHAILSKSNEMASLLIDYPV--ALRAVDVQWGWTALHCAAHVGMVEVVDILLEKKVSPYAT-SKIGQTPLDVARRAHQLKTTLLFESFLKEEP 603
            + + PL  A   G    VR+LL +GA +D+L RA  TPLM A   +S E+   L++      L+  D   GW + H A+  G   ++  LL+   S + T SKI +TPL  A    +L+   L     + EP
Sbjct:   68 DSKRPLHEAAAAGHRDCVRYLLARGAAVDSLKRADWTPLMLACAKRSLEVIQELVENGADPLLKNKD---GWNSFHIASREGDPLILQYLLDVCPSAWKTESKIQRTPLHTAAMHGRLEAVKLLLQRCQYEP 196
[Close]
BLAST of mRNA_H-elongata_contig17539.4573.1 vs. uniprot
Match: A0A023B6R6_GRENI (Ankyrin repeat protein n=1 Tax=Gregarina niphandrodes TaxID=110365 RepID=A0A023B6R6_GRENI)

HSP 1 Score: 56.2 bits (134), Expect = 4.530e-5
Identity = 39/108 (36.11%), Postives = 55/108 (50.93%), Query Frame = 1 
Query:  313 RARRTP--LMHAILSKSNEMASLLIDYPVALRAVDVQWGWTALHCAAHVGMVEVVDILLEKKVSPYATSKIGQTPLDVARR-------AHQLKTTLLFESFLKEEPAH 609
            + R TP  L  AIL    E    L++   +L + +   GWTA+H AA VG VE++D+L +K  S  A  + G TPL +A          + L+  L  ESF  E PA+
Sbjct:   16 KGRLTPSHLFRAILRNDVEGVVELVETEPSLLSGEDLKGWTAVHYAARVGSVEIMDVLRDKGASTGAEDRKGMTPLAIATYHKHDVLVKYLLRKQLAAESFYGEAPAY 123
[Close]
BLAST of mRNA_H-elongata_contig17539.4573.1 vs. uniprot
Match: UPI000FFB842D (ankyrin repeat domain-containing protein 26 n=1 Tax=Tupaia chinensis TaxID=246437 RepID=UPI000FFB842D)

HSP 1 Score: 56.6 bits (135), Expect = 6.070e-5
Identity = 40/117 (34.19%), Postives = 57/117 (48.72%), Query Frame = 1 
Query:  184 RQGKYVRDPRDEMETPLIVAVIRGATTSVRWLLGKGAKLDTLDRARRTPLMHAILSKSNEMASLLIDYPVALRAVDVQWGWTALHCAAHVGMVEVVDILLEKKVSPYATSKIGQTPL 534
            R+   V  P  +  T L +A   G    V  L  +  +LD  D   +TPL+ A+  +  + A++L++Y     A D   G TALH AAH GM+ +   LL   V+  A SK   TPL
Sbjct:   59 RKENVVNQPDKKQRTALHLACASGHEEMVTLLAERQCELDLRDGQFKTPLIMAVQCQHEKCANILLEYGADPIAHDSS-GNTALHYAAHHGMISIAQKLLSLYVNIDARSKAKMTPL 174
[Close]
BLAST of mRNA_H-elongata_contig17539.4573.1 vs. uniprot
Match: A0A2J6SXZ4_9HELO (Ankyrin n=2 Tax=Hyaloscypha hepaticicola/Rhizoscyphus ericae species complex TaxID=186449 RepID=A0A2J6SXZ4_9HELO)

HSP 1 Score: 54.7 bits (130), Expect = 6.400e-5
Identity = 39/106 (36.79%), Postives = 57/106 (53.77%), Query Frame = 1 
Query:  226 TPLIVAV-IRGATTSVRWLLGKGAKLDTLDRARRTPLMHAILSKSN-EMASLLIDY-PVALRAVDVQWGWTALHCAAHVGMVEVVDILLEKKVSPYATSKIGQTPL 534
            TPL++AV ++     V+  L KGA ++          +H I SK N ++A LL +  P A   V  + G  A+H AA VG V +V++L++ K    AT   GQTPL
Sbjct:   75 TPLMIAVSLKEGEDLVKLFLSKGADVNAKSEFLPQTALHFIASKKNVDLARLLFEQNPPASARVKDKRGQYAIHRAAAVGSVPIVELLIKNKSPISATDVAGQTPL 180
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig17539.4573.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 10
Match NameE-valueIdentityDescription
D8LNE8_ECTSI4.470e-16957.94Ankyrin n=1 Tax=Ectocarpus siliculosus TaxID=2880 ... [more]
A0A7S2S5Z2_9STRA3.170e-934.13Hypothetical protein n=1 Tax=Rhizochromulina marin... [more]
UPI00188DED7C6.330e-637.25ankyrin repeat domain-containing protein n=1 Tax=N... [more]
A0A7Y7PAM1_9BACT1.040e-532.31Ankyrin repeat domain-containing protein n=1 Tax=B... [more]
UPI001F617B791.710e-538.18ankyrin repeat domain-containing protein n=1 Tax=S... [more]
UPI001F58BD4B3.300e-533.05ankyrin repeat domain-containing protein n=1 Tax=I... [more]
UPI00033183694.290e-533.33ankyrin repeat domain-containing protein 16 n=1 Ta... [more]
A0A023B6R6_GRENI4.530e-536.11Ankyrin repeat protein n=1 Tax=Gregarina niphandro... [more]
UPI000FFB842D6.070e-534.19ankyrin repeat domain-containing protein 26 n=1 Ta... [more]
A0A2J6SXZ4_9HELO6.400e-536.79Ankyrin n=2 Tax=Hyaloscypha hepaticicola/Rhizoscyp... [more]
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig17539contigH-elongata_contig17539:438..4119 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score495.7
Seed ortholog evalue1.9e-137
Seed eggNOG ortholog2880.D8LNE8
EggNOG free text desc.response to abiotic stimulus
EggNOG OGsCOG0666@1,KOG4177@2759
COG Functional cat.G
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionAnkyrin repeat-containing domain
Ec32 orthologEc-04_004120.1
Exons8
Model size1143
Cds size1143
Stop1
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig17539.4573.1prot_H-elongata_contig17539.4573.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig17539 438..4119 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930017.307646-CDS-H-elongata_contig17539:437..5091622930017.307646-CDS-H-elongata_contig17539:437..509Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig17539 438..509 +
1691679247.586178-CDS-H-elongata_contig17539:437..5091691679247.586178-CDS-H-elongata_contig17539:437..509Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig17539 438..509 +
1622930017.3293262-CDS-H-elongata_contig17539:704..8511622930017.3293262-CDS-H-elongata_contig17539:704..851Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig17539 705..851 +
1691679247.598947-CDS-H-elongata_contig17539:704..8511691679247.598947-CDS-H-elongata_contig17539:704..851Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig17539 705..851 +
1622930017.3458972-CDS-H-elongata_contig17539:1671..17701622930017.3458972-CDS-H-elongata_contig17539:1671..1770Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig17539 1672..1770 +
1691679247.6087563-CDS-H-elongata_contig17539:1671..17701691679247.6087563-CDS-H-elongata_contig17539:1671..1770Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig17539 1672..1770 +
1622930017.360009-CDS-H-elongata_contig17539:2005..22031622930017.360009-CDS-H-elongata_contig17539:2005..2203Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig17539 2006..2203 +
1691679247.6178205-CDS-H-elongata_contig17539:2005..22031691679247.6178205-CDS-H-elongata_contig17539:2005..2203Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig17539 2006..2203 +
1622930017.3739016-CDS-H-elongata_contig17539:2566..26861622930017.3739016-CDS-H-elongata_contig17539:2566..2686Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig17539 2567..2686 +
1691679247.6274097-CDS-H-elongata_contig17539:2566..26861691679247.6274097-CDS-H-elongata_contig17539:2566..2686Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig17539 2567..2686 +
1622930017.3877745-CDS-H-elongata_contig17539:3194..33501622930017.3877745-CDS-H-elongata_contig17539:3194..3350Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig17539 3195..3350 +
1691679247.6363628-CDS-H-elongata_contig17539:3194..33501691679247.6363628-CDS-H-elongata_contig17539:3194..3350Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig17539 3195..3350 +
1622930017.4023457-CDS-H-elongata_contig17539:3550..36341622930017.4023457-CDS-H-elongata_contig17539:3550..3634Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig17539 3551..3634 +
1691679247.6456587-CDS-H-elongata_contig17539:3550..36341691679247.6456587-CDS-H-elongata_contig17539:3550..3634Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig17539 3551..3634 +
1622930017.4172854-CDS-H-elongata_contig17539:3852..41191622930017.4172854-CDS-H-elongata_contig17539:3852..4119Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig17539 3853..4119 +
1691679247.6551802-CDS-H-elongata_contig17539:3852..41191691679247.6551802-CDS-H-elongata_contig17539:3852..4119Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig17539 3853..4119 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig17539.4573.1

>prot_H-elongata_contig17539.4573.1 ID=prot_H-elongata_contig17539.4573.1|Name=mRNA_H-elongata_contig17539.4573.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=381bp
QVGYIITKLFGVVPLLLEDLPFEEVIAELKAAPRPHKLEFMRYDMRFNRL
TLEWETLEEVRRQGKYVRDPRDEMETPLIVAVIRGATTSVRWLLGKGAKL
DTLDRARRTPLMHAILSKSNEMASLLIDYPVALRAVDVQWGWTALHCAAH
VGMVEVVDILLEKKVSPYATSKIGQTPLDVARRAHQLKTTLLFESFLKEE
PAHEVIVDGGAHIWQGSHNAAHPAWISDNGFQCVVTIADPRFPEKRICWL
DDDEEIDHFRVEAEVDDDDTSSRSWNNLTQHVRAIINFLYKAVRRRKKIL
VHCRNGTSTSVAVIAVYRLLKHGVGIRNTLSDIASTRGDSMDLSPAIATG
LQQLQEDFAREKEKRLVERVRLMPLMSLGF*
back to top

mRNA from alignment at H-elongata_contig17539:438..4119+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig17539.4573.1 ID=mRNA_H-elongata_contig17539.4573.1|Name=mRNA_H-elongata_contig17539.4573.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=3682bp|location=Sequence derived from alignment at H-elongata_contig17539:438..4119+ (Himanthalia elongata Himel1 dioecious)
CAGGTTGGATATATCATTACCAAGCTCTTCGGTGTTGTCCCTCTTCTCCT
GGAAGACCTCCCGTTTGAAGAGGTTCGCCATTTTTCCGGTTTGCGTATAG
TCGCGGATTTTGGAAGGGGAGGAAGAAACGTCACTGCAGCTGGCGCTCCT
TCGCTGTTTAACTACACTACTCTCATCCGACGAGGTTGCACGGATGGAAA
TGCATGACCGTAATACTTAAATGAGAAGAATACCAACCCTACAGATCAAG
CATTCTCACGTTGGCAGGTAATTGCAGAGCTTAAGGCTGCTCCACGCCCT
CATAAACTAGAGTTCATGCGCTACGACATGCGATTTAACCGCTTGACCCT
CGAGTGGGAAACTTTGGAGGAGGTCCGCAGACAGGGAAAGTACGTGCGAG
ACCCCCGAGATGAGGTTAGAGGGACGATTATCATACATACCTACAGTAGA
GCTATCTATAAAATTTTGTTCAAGTTTCGAAGTTCATTAGGATCGTTACC
ATTGAGCAATGGTATCGCTTTCAGTTCTGCCTTAGCCTTTTCTACTGTTC
AGTTCATCAGCAATATTTGTATGCTTGACAAGAAGGTTCGATTGCAGGGC
CTGGTATAGCCGTAGTATACCCTTGCAAAACAATTGTCCGAACAAATGTT
TATTTAATCCAAGTACCCTCCCCCTCCCCTCCCCCTGCCGGCTCCCTGCT
CTCTGGCTTGCAGATGTTGCGCTTTGTAAAGGCATGTGCAAAGGGCGACA
TAGATATATTGAAGAAATGTCTCGATCGTGGAGAAAATATAAAGTGCACC
GATATGCAAGGCAACACCGGCATGCACGTTGCGGCGGCATCGTCTAGTAT
TGCCGTGATGGAATTTTTGCTCCAACATAATGCCGATAAGGAAGCCAAAA
ACCAAAACGTGAGAGAGGAAGAAAGTTCTGGATAGACCAATTATTGCGAT
ACATTTAGTGTGGACGCTTCGGTTGAGTTAATATTCCCACAACGCAAATA
AAACAGCTCAAGCTCTGTTTTTAAGCCTCACGACCCTGTACACAGTACTG
TATTACGACATGGAAACTGCGAAGCGAAATCAAGATTATTGCTCTCGGTA
TACCCCGTTGCACTCGCAAAAACTCGATGCTAGTGCATGTTGTACAATAC
ATGTGTCCCCCATGCATCGGTTAGTGTTTCTGGACAACGTATCAAAACGC
CTTGATCATGGTTCTCTTCTCCCAAATGATGCAGATGGAAACCCCGCTAA
TTGTTGCTGTGATACGGGGAGCCACGACGTCCGTGCGTTGGTTGCTAGGT
AAAGGCGCGAAGCTCGACACATTGGACAGGGCGGTGAGATGCACACTCGA
AAATTGCTTCCAGCTCTCTTATAATCATTTTGCTTACACCGAAAATAAGC
TTCAGCATTGGCCTATTTCTTGCAAAGAAACATCGCTATCTCAACCGTAT
ATTATACTCTTAAATGCAAATTATGCACTATTCGCCCGCATTTCTATACT
AAGGCATCCCACCTCTTGACTAACCGTGTCATTCGAGCTTCTTGCACCGT
GCGCCCACGTATACCTAGAGACGCACGCCTCTGATGCATGCTATACTATC
CAAGAGCAACGAAATGGCGTCGCTACTAATTGATTACCCCGTGGCCCTAA
GAGCGGTGGATGTGCAGTGGGGCTGGACTGCGCTCCACTGCGCGGCGCAC
GTAGGTATGGTGGAGGTCGTAGATATACTTCTTGAGAAAAAGGTCTCACC
GTACGCTACGAGCAAGGTAAGTAAACCTCGTGCGTCAATCTAAGGTCAGG
AGGCGTAGCGGAGAAGTAGCAGTTAAAAAACGATCTGTGTTACGTGAAGA
CTATGGAGGACACTACTTATACCAGTGTTCGATCTAACCTTGAAAGAGTA
ACAGCCTGGATTCCGACAAACTTTGTCCGTCAATCATTAGGTTGGAGAGG
CGAATGTCATATATATATTCCTGACCAGTGTGATACGTTTGCCGGGAGTT
TTTAAGCAACCCCCGGTAAAACCGTGCTACACGTACCATAATCAGTTGAT
CTATCTCGCTGCCAGTCCCAACGTCCCTGGTGCTAGCTCGCTCGCTATTA
ATGGTAAAAACAACGAAATTGGGGAGCAGATCGGTCAAACACCTCTCGAC
GTTGCACGAAGAGCGCATCAATTGAAGACAACTTTACTATTTGAATCATT
TTTGAAAGAAGAACCAGCACATGAGGTCATCGTCGATGGCGGGGCGCACG
TAAGAGAACATCAGACGGGGAAATGGATACTAATCGAGTATTTCTAATGA
CTGCGCGGTTGATGGGCTACGGATAATACAGCTTGTGATATGTCCAATCG
TATGGCAACAGCACCCATGACTCAATCCGCGCATAAGGGCCCTCTGGCCC
ACGCATAGATTATTTATTATTTTATTGGTCTTACCCATCATGTGATTCGG
CTCTATATAATTATATATATATATATATATTAGTGGTCTAGGTATCATCG
CAAGCTTCAAGTAATGTTCTCGGTTTCCGAAATCTGTTTGATTTTGAGAG
CTTTTATCCGCAGCGGCATGCGCATTAGCATCTACATTGAAGTCTTCGAT
CCTCCTATTACACCACTGGTACAGAAGGGTTCCGATCACGACCAATAATT
ACCACTTTGATGTCCCCCACGGTGTGGGGTAGAAATTGAGACATAAACAT
CGACGGATATTTCTACTTATAGCTTACGTATGTCGTTACCCCTTCTCGTC
TCCCCAGATATGGCAAGGGTCTCATAACGCGGCACACCCTGCGTGGATAT
CCGATAATGGTTTCCAATGTGTGGTTACCATCGCCGACCCGCGGTTCCCA
GAAAAACGTATTTGCTGGCTCGATGACGACGAGGAAATTGACCACTTCAG
AGTAGAGGCTGAGGTGCTCTATAAAGCGAAGCACATCCATCCATCCATCC
CATTTTCTTACAAATGTTACATCGCTAGACGTATTGCACAAGTCGCCCTG
ACAGCTGAGAAGCCGTGAATTGTGATATGAAAGAACGGGAAGCATACCGC
ATGATTTTTATCATATCCTGATAGGCCTGTACCTTCATGCTCGATCTAAA
ATGTATCGAGAAGGTGGATGACGATGATACATCGTCAAGGTCGTGGAATA
ACCTTACGCAGCACGTCAGAGCTATAATCAACTTCTTATATAAGGCGGTG
AGGGCGAGGGCAACTGCAGCTTTGTACTTACGAGTTGAAATCCAACCTAA
ACGTTGAGACATTGTCCACGGCGCAATATTTAGGAATTTGTAGGTCACAC
ATACTTTAGGCGCAAAACGATATCAACGATAATTTGTATCGGAAAGTAAG
GGGACAATAGCAGGGAGCGAGCTGCGCCCAACGCTATCGCTTTAAATAAT
GTGGTTGCTCTACAGGTCCGACGAAGAAAAAAAATATTGGTGCATTGCAG
AAATGGCACCAGTACATCCGTTGCTGTCATAGCGGTCTATCGCCTCCTAA
AACACGGTGTGGGAATACGGAATACCCTTAGTGATATCGCCAGCACGCGT
GGGGATTCCATGGATCTATCCCCTGCTATTGCGACTGGGTTGCAGCAGCT
GCAAGAAGATTTCGCTCGAGAAAAGGAAAAACGTCTCGTAGAACGAGTGA
GACTCATGCCTCTTATGTCGCTAGGCTTCTAG
back to top

Coding sequence (CDS) from alignment at H-elongata_contig17539:438..4119+

>mRNA_H-elongata_contig17539.4573.1 ID=mRNA_H-elongata_contig17539.4573.1|Name=mRNA_H-elongata_contig17539.4573.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=2286bp|location=Sequence derived from alignment at H-elongata_contig17539:438..4119+ (Himanthalia elongata Himel1 dioecious)
CAGGTTGGATATATCATTACCAAGCTCTTCGGTGTTGTCCCTCTTCTCCT
GGAAGACCTCCCGTTTGAAGAGCAGGTTGGATATATCATTACCAAGCTCT
TCGGTGTTGTCCCTCTTCTCCTGGAAGACCTCCCGTTTGAAGAGGTAATT
GCAGAGCTTAAGGCTGCTCCACGCCCTCATAAACTAGAGTTCATGCGCTA
CGACATGCGATTTAACCGCTTGACCCTCGAGTGGGAAACTTTGGAGGAGG
TCCGCAGACAGGGAAAGTACGTGCGAGACCCCCGAGATGAGGTAATTGCA
GAGCTTAAGGCTGCTCCACGCCCTCATAAACTAGAGTTCATGCGCTACGA
CATGCGATTTAACCGCTTGACCCTCGAGTGGGAAACTTTGGAGGAGGTCC
GCAGACAGGGAAAGTACGTGCGAGACCCCCGAGATGAGATGGAAACCCCG
CTAATTGTTGCTGTGATACGGGGAGCCACGACGTCCGTGCGTTGGTTGCT
AGGTAAAGGCGCGAAGCTCGACACATTGGACAGGGCGATGGAAACCCCGC
TAATTGTTGCTGTGATACGGGGAGCCACGACGTCCGTGCGTTGGTTGCTA
GGTAAAGGCGCGAAGCTCGACACATTGGACAGGGCGAGACGCACGCCTCT
GATGCATGCTATACTATCCAAGAGCAACGAAATGGCGTCGCTACTAATTG
ATTACCCCGTGGCCCTAAGAGCGGTGGATGTGCAGTGGGGCTGGACTGCG
CTCCACTGCGCGGCGCACGTAGGTATGGTGGAGGTCGTAGATATACTTCT
TGAGAAAAAGGTCTCACCGTACGCTACGAGCAAGAGACGCACGCCTCTGA
TGCATGCTATACTATCCAAGAGCAACGAAATGGCGTCGCTACTAATTGAT
TACCCCGTGGCCCTAAGAGCGGTGGATGTGCAGTGGGGCTGGACTGCGCT
CCACTGCGCGGCGCACGTAGGTATGGTGGAGGTCGTAGATATACTTCTTG
AGAAAAAGGTCTCACCGTACGCTACGAGCAAGATCGGTCAAACACCTCTC
GACGTTGCACGAAGAGCGCATCAATTGAAGACAACTTTACTATTTGAATC
ATTTTTGAAAGAAGAACCAGCACATGAGGTCATCGTCGATGGCGGGGCGC
ACATCGGTCAAACACCTCTCGACGTTGCACGAAGAGCGCATCAATTGAAG
ACAACTTTACTATTTGAATCATTTTTGAAAGAAGAACCAGCACATGAGGT
CATCGTCGATGGCGGGGCGCACATATGGCAAGGGTCTCATAACGCGGCAC
ACCCTGCGTGGATATCCGATAATGGTTTCCAATGTGTGGTTACCATCGCC
GACCCGCGGTTCCCAGAAAAACGTATTTGCTGGCTCGATGACGACGAGGA
AATTGACCACTTCAGAGTAGAGGCTGAGATATGGCAAGGGTCTCATAACG
CGGCACACCCTGCGTGGATATCCGATAATGGTTTCCAATGTGTGGTTACC
ATCGCCGACCCGCGGTTCCCAGAAAAACGTATTTGCTGGCTCGATGACGA
CGAGGAAATTGACCACTTCAGAGTAGAGGCTGAGGTGGATGACGATGATA
CATCGTCAAGGTCGTGGAATAACCTTACGCAGCACGTCAGAGCTATAATC
AACTTCTTATATAAGGCGGTGGATGACGATGATACATCGTCAAGGTCGTG
GAATAACCTTACGCAGCACGTCAGAGCTATAATCAACTTCTTATATAAGG
CGGTCCGACGAAGAAAAAAAATATTGGTGCATTGCAGAAATGGCACCAGT
ACATCCGTTGCTGTCATAGCGGTCTATCGCCTCCTAAAACACGGTGTGGG
AATACGGAATACCCTTAGTGATATCGCCAGCACGCGTGGGGATTCCATGG
ATCTATCCCCTGCTATTGCGACTGGGTTGCAGCAGCTGCAAGAAGATTTC
GCTCGAGAAAAGGAAAAACGTCTCGTAGAACGAGTGAGACTCATGCCTCT
TATGTCGCTAGGCTTCTAGGTCCGACGAAGAAAAAAAATATTGGTGCATT
GCAGAAATGGCACCAGTACATCCGTTGCTGTCATAGCGGTCTATCGCCTC
CTAAAACACGGTGTGGGAATACGGAATACCCTTAGTGATATCGCCAGCAC
GCGTGGGGATTCCATGGATCTATCCCCTGCTATTGCGACTGGGTTGCAGC
AGCTGCAAGAAGATTTCGCTCGAGAAAAGGAAAAACGTCTCGTAGAACGA
GTGAGACTCATGCCTCTTATGTCGCTAGGCTTCTAG
back to top