mRNA_H-elongata_contig175107.4560.1 (mRNA) Himanthalia elongata Himel1 dioecious
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Overview
Homology
BLAST of mRNA_H-elongata_contig175107.4560.1 vs. uniprot
Match: D8LB49_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LB49_ECTSI) HSP 1 Score: 107 bits (266), Expect = 1.880e-25 Identity = 48/61 (78.69%), Postives = 52/61 (85.25%), Query Frame = 1
Query: 1 GISIGRAFGVMMFIIFCSYGLGMWYGATEVARDIRRGCLGEGCKTGGEVLTVFWAILNGAM 183
GI +A VMMFIIFCSYGLGMWYGA+EVARD+R GC G CKTGG+VLTVFWAILNGAM
Sbjct: 303 GIGFAKALAVMMFIIFCSYGLGMWYGASEVARDLRDGCTGSHCKTGGDVLTVFWAILNGAM 363
BLAST of mRNA_H-elongata_contig175107.4560.1 vs. uniprot
Match: K3W853_GLOUD (Uncharacterized protein n=2 Tax=Globisporangium ultimum (strain ATCC 200006 / CBS 805.95 / DAOM BR144) TaxID=431595 RepID=K3W853_GLOUD) HSP 1 Score: 68.2 bits (165), Expect = 8.820e-12 Identity = 31/63 (49.21%), Postives = 43/63 (68.25%), Query Frame = 1
Query: 1 GISIGRAFGVMMFIIFCSYGLGMWYGATEVARDIRRG--CLGEGCKTGGEVLTVFWAILNGAM 183
G ++G G+M F +FC+Y G++YGA +VA D G C+G GC GG VLTVF+A++ GAM
Sbjct: 297 GFAVGWGTGLMFFTVFCTYACGLFYGAVKVANDRLDGNNCVGSGCYDGGRVLTVFFAVIMGAM 359
BLAST of mRNA_H-elongata_contig175107.4560.1 vs. uniprot
Match: K3W848_GLOUD (Uncharacterized protein n=1 Tax=Globisporangium ultimum (strain ATCC 200006 / CBS 805.95 / DAOM BR144) TaxID=431595 RepID=K3W848_GLOUD) HSP 1 Score: 67.4 bits (163), Expect = 1.650e-11 Identity = 32/63 (50.79%), Postives = 41/63 (65.08%), Query Frame = 1
Query: 1 GISIGRAFGVMMFIIFCSYGLGMWYGATEVARDIRRG--CLGEGCKTGGEVLTVFWAILNGAM 183
G ++G GVM F +FC+Y GM+YGA +VA G C G GC GG VLTVF+A++ GAM
Sbjct: 306 GFAVGAGTGVMFFTVFCTYACGMFYGALKVANSHLDGNTCSGSGCYDGGRVLTVFFAVIMGAM 368
BLAST of mRNA_H-elongata_contig175107.4560.1 vs. uniprot
Match: T0SBB4_SAPDV (Uncharacterized protein n=1 Tax=Saprolegnia diclina (strain VS20) TaxID=1156394 RepID=T0SBB4_SAPDV) HSP 1 Score: 65.1 bits (157), Expect = 1.070e-10 Identity = 27/62 (43.55%), Postives = 43/62 (69.35%), Query Frame = 1
Query: 1 GISIGRAFGVMMFIIFCSYGLGMWYGATEVARD-IRRGCLGEGCKTGGEVLTVFWAILNGAM 183
G+++G G M F++FC+Y +GM+YGA ++ D I C+G GC GG V+TVF++I+ +M
Sbjct: 284 GLAVGLGTGGMFFVVFCTYAVGMYYGAVKITNDQINDKCVGSGCYDGGRVITVFFSIVMSSM 345
BLAST of mRNA_H-elongata_contig175107.4560.1 vs. uniprot
Match: K3W878_GLOUD (Uncharacterized protein n=1 Tax=Globisporangium ultimum (strain ATCC 200006 / CBS 805.95 / DAOM BR144) TaxID=431595 RepID=K3W878_GLOUD) HSP 1 Score: 65.1 bits (157), Expect = 1.070e-10 Identity = 28/63 (44.44%), Postives = 43/63 (68.25%), Query Frame = 1
Query: 1 GISIGRAFGVMMFIIFCSYGLGMWYGATEVARDIRRG--CLGEGCKTGGEVLTVFWAILNGAM 183
G ++G GVM F I+C+Y G+++GA +++ D G C G GC GG+V+T+F+AI+ GAM
Sbjct: 196 GFAVGWGTGVMFFTIYCTYAAGLYFGAIQISNDQLSGSQCAGHGCYDGGKVITIFFAIIMGAM 258
BLAST of mRNA_H-elongata_contig175107.4560.1 vs. uniprot
Match: A0A2D4BTB3_PYTIN (Multidrug resistance protein ABC superfamily n=1 Tax=Pythium insidiosum TaxID=114742 RepID=A0A2D4BTB3_PYTIN) HSP 1 Score: 64.7 bits (156), Expect = 1.450e-10 Identity = 25/63 (39.68%), Postives = 44/63 (69.84%), Query Frame = 1
Query: 1 GISIGRAFGVMMFIIFCSYGLGMWYGATEVARDIRRG--CLGEGCKTGGEVLTVFWAILNGAM 183
G ++G GVM F+++C+Y G+++G+ ++A D C+G GC GG+++TVF+A++ GAM
Sbjct: 273 GFAVGSGIGVMFFVLYCTYSAGLYFGSVQIANDQLGAIKCVGSGCYDGGKLMTVFFAVIMGAM 335
BLAST of mRNA_H-elongata_contig175107.4560.1 vs. uniprot
Match: T0PWV3_SAPDV (ABC transmembrane type-1 domain-containing protein n=1 Tax=Saprolegnia diclina (strain VS20) TaxID=1156394 RepID=T0PWV3_SAPDV) HSP 1 Score: 63.9 bits (154), Expect = 2.660e-10 Identity = 29/62 (46.77%), Postives = 41/62 (66.13%), Query Frame = 1
Query: 1 GISIGRAFGVMMFIIFCSYGLGMWYGATEVARD-IRRGCLGEGCKTGGEVLTVFWAILNGAM 183
G++IG G M F+IFC+Y +GM+YGA +VA D I C+G GC G VL +F+ I+ +M
Sbjct: 244 GVAIGVGTGGMFFVIFCTYAIGMYYGAVKVADDQITGSCVGSGCYDSGRVLVIFFCIIMSSM 305
BLAST of mRNA_H-elongata_contig175107.4560.1 vs. uniprot
Match: A0A5D6Y1J8_9STRA (Uncharacterized protein n=1 Tax=Pythium brassicum TaxID=1485010 RepID=A0A5D6Y1J8_9STRA) HSP 1 Score: 63.5 bits (153), Expect = 3.710e-10 Identity = 27/63 (42.86%), Postives = 42/63 (66.67%), Query Frame = 1
Query: 1 GISIGRAFGVMMFIIFCSYGLGMWYGATEVARDIRRG--CLGEGCKTGGEVLTVFWAILNGAM 183
G ++G GVM F I+C+Y G+++GA +++ D G C GC GG+V+T+F+AI+ GAM
Sbjct: 251 GFAVGWGMGVMFFTIYCTYAAGLYFGAVQISNDQLSGTPCTDHGCYDGGKVITIFFAIIMGAM 313
BLAST of mRNA_H-elongata_contig175107.4560.1 vs. uniprot
Match: A0A067C3J5_SAPPC (Uncharacterized protein n=2 Tax=Saprolegnia parasitica (strain CBS 223.65) TaxID=695850 RepID=A0A067C3J5_SAPPC) HSP 1 Score: 63.2 bits (152), Expect = 5.120e-10 Identity = 28/62 (45.16%), Postives = 41/62 (66.13%), Query Frame = 1
Query: 1 GISIGRAFGVMMFIIFCSYGLGMWYGATEVARD-IRRGCLGEGCKTGGEVLTVFWAILNGAM 183
G+++G G M F+IFC+Y +GM+YGA +VA D I C+G GC G VL +F+ I+ +M
Sbjct: 275 GVAVGVGTGGMFFVIFCTYAIGMYYGAVKVADDQITGSCVGSGCYDSGRVLIIFFCIIMSSM 336
BLAST of mRNA_H-elongata_contig175107.4560.1 vs. uniprot
Match: A0A1V9YWC7_9STRA (ATP-binding Cassette (ABC) Superfamily (Fragment) n=1 Tax=Achlya hypogyna TaxID=1202772 RepID=A0A1V9YWC7_9STRA) HSP 1 Score: 62.4 bits (150), Expect = 9.430e-10 Identity = 28/62 (45.16%), Postives = 41/62 (66.13%), Query Frame = 1
Query: 1 GISIGRAFGVMMFIIFCSYGLGMWYGATEVARD-IRRGCLGEGCKTGGEVLTVFWAILNGAM 183
G+++G G M F++FC+Y LGM+YGA +V+ D I C G C GG VL VF++++ AM
Sbjct: 280 GLAVGLGTGGMFFVVFCTYSLGMYYGAVKVSNDQINDKCTGSHCYDGGRVLIVFFSVVMSAM 341 The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig175107.4560.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-elongata_contig175107.4560.1 >prot_H-elongata_contig175107.4560.1 ID=prot_H-elongata_contig175107.4560.1|Name=mRNA_H-elongata_contig175107.4560.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=57bp MMFIIFCSYGLGMWYGATEVARDIRRGCLGEGCKTGGEVLTVFWAILNGAback to top mRNA from alignment at H-elongata_contig175107:129..329- Legend: UTRCDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-elongata_contig175107.4560.1 ID=mRNA_H-elongata_contig175107.4560.1|Name=mRNA_H-elongata_contig175107.4560.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=201bp|location=Sequence derived from alignment at H-elongata_contig175107:129..329- (Himanthalia elongata Himel1 dioecious)back to top Coding sequence (CDS) from alignment at H-elongata_contig175107:129..329- >mRNA_H-elongata_contig175107.4560.1 ID=mRNA_H-elongata_contig175107.4560.1|Name=mRNA_H-elongata_contig175107.4560.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=342bp|location=Sequence derived from alignment at H-elongata_contig175107:129..329- (Himanthalia elongata Himel1 dioecious)back to top |