mRNA_H-elongata_contig175107.4560.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig175107.4560.1
Unique NamemRNA_H-elongata_contig175107.4560.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
BLAST of mRNA_H-elongata_contig175107.4560.1 vs. uniprot
Match: D8LB49_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LB49_ECTSI)

HSP 1 Score: 107 bits (266), Expect = 1.880e-25
Identity = 48/61 (78.69%), Postives = 52/61 (85.25%), Query Frame = 1
Query:    1 GISIGRAFGVMMFIIFCSYGLGMWYGATEVARDIRRGCLGEGCKTGGEVLTVFWAILNGAM 183
            GI   +A  VMMFIIFCSYGLGMWYGA+EVARD+R GC G  CKTGG+VLTVFWAILNGAM
Sbjct:  303 GIGFAKALAVMMFIIFCSYGLGMWYGASEVARDLRDGCTGSHCKTGGDVLTVFWAILNGAM 363          
BLAST of mRNA_H-elongata_contig175107.4560.1 vs. uniprot
Match: K3W853_GLOUD (Uncharacterized protein n=2 Tax=Globisporangium ultimum (strain ATCC 200006 / CBS 805.95 / DAOM BR144) TaxID=431595 RepID=K3W853_GLOUD)

HSP 1 Score: 68.2 bits (165), Expect = 8.820e-12
Identity = 31/63 (49.21%), Postives = 43/63 (68.25%), Query Frame = 1
Query:    1 GISIGRAFGVMMFIIFCSYGLGMWYGATEVARDIRRG--CLGEGCKTGGEVLTVFWAILNGAM 183
            G ++G   G+M F +FC+Y  G++YGA +VA D   G  C+G GC  GG VLTVF+A++ GAM
Sbjct:  297 GFAVGWGTGLMFFTVFCTYACGLFYGAVKVANDRLDGNNCVGSGCYDGGRVLTVFFAVIMGAM 359          
BLAST of mRNA_H-elongata_contig175107.4560.1 vs. uniprot
Match: K3W848_GLOUD (Uncharacterized protein n=1 Tax=Globisporangium ultimum (strain ATCC 200006 / CBS 805.95 / DAOM BR144) TaxID=431595 RepID=K3W848_GLOUD)

HSP 1 Score: 67.4 bits (163), Expect = 1.650e-11
Identity = 32/63 (50.79%), Postives = 41/63 (65.08%), Query Frame = 1
Query:    1 GISIGRAFGVMMFIIFCSYGLGMWYGATEVARDIRRG--CLGEGCKTGGEVLTVFWAILNGAM 183
            G ++G   GVM F +FC+Y  GM+YGA +VA     G  C G GC  GG VLTVF+A++ GAM
Sbjct:  306 GFAVGAGTGVMFFTVFCTYACGMFYGALKVANSHLDGNTCSGSGCYDGGRVLTVFFAVIMGAM 368          
BLAST of mRNA_H-elongata_contig175107.4560.1 vs. uniprot
Match: T0SBB4_SAPDV (Uncharacterized protein n=1 Tax=Saprolegnia diclina (strain VS20) TaxID=1156394 RepID=T0SBB4_SAPDV)

HSP 1 Score: 65.1 bits (157), Expect = 1.070e-10
Identity = 27/62 (43.55%), Postives = 43/62 (69.35%), Query Frame = 1
Query:    1 GISIGRAFGVMMFIIFCSYGLGMWYGATEVARD-IRRGCLGEGCKTGGEVLTVFWAILNGAM 183
            G+++G   G M F++FC+Y +GM+YGA ++  D I   C+G GC  GG V+TVF++I+  +M
Sbjct:  284 GLAVGLGTGGMFFVVFCTYAVGMYYGAVKITNDQINDKCVGSGCYDGGRVITVFFSIVMSSM 345          
BLAST of mRNA_H-elongata_contig175107.4560.1 vs. uniprot
Match: K3W878_GLOUD (Uncharacterized protein n=1 Tax=Globisporangium ultimum (strain ATCC 200006 / CBS 805.95 / DAOM BR144) TaxID=431595 RepID=K3W878_GLOUD)

HSP 1 Score: 65.1 bits (157), Expect = 1.070e-10
Identity = 28/63 (44.44%), Postives = 43/63 (68.25%), Query Frame = 1
Query:    1 GISIGRAFGVMMFIIFCSYGLGMWYGATEVARDIRRG--CLGEGCKTGGEVLTVFWAILNGAM 183
            G ++G   GVM F I+C+Y  G+++GA +++ D   G  C G GC  GG+V+T+F+AI+ GAM
Sbjct:  196 GFAVGWGTGVMFFTIYCTYAAGLYFGAIQISNDQLSGSQCAGHGCYDGGKVITIFFAIIMGAM 258          
BLAST of mRNA_H-elongata_contig175107.4560.1 vs. uniprot
Match: A0A2D4BTB3_PYTIN (Multidrug resistance protein ABC superfamily n=1 Tax=Pythium insidiosum TaxID=114742 RepID=A0A2D4BTB3_PYTIN)

HSP 1 Score: 64.7 bits (156), Expect = 1.450e-10
Identity = 25/63 (39.68%), Postives = 44/63 (69.84%), Query Frame = 1
Query:    1 GISIGRAFGVMMFIIFCSYGLGMWYGATEVARDIRRG--CLGEGCKTGGEVLTVFWAILNGAM 183
            G ++G   GVM F+++C+Y  G+++G+ ++A D      C+G GC  GG+++TVF+A++ GAM
Sbjct:  273 GFAVGSGIGVMFFVLYCTYSAGLYFGSVQIANDQLGAIKCVGSGCYDGGKLMTVFFAVIMGAM 335          
BLAST of mRNA_H-elongata_contig175107.4560.1 vs. uniprot
Match: T0PWV3_SAPDV (ABC transmembrane type-1 domain-containing protein n=1 Tax=Saprolegnia diclina (strain VS20) TaxID=1156394 RepID=T0PWV3_SAPDV)

HSP 1 Score: 63.9 bits (154), Expect = 2.660e-10
Identity = 29/62 (46.77%), Postives = 41/62 (66.13%), Query Frame = 1
Query:    1 GISIGRAFGVMMFIIFCSYGLGMWYGATEVARD-IRRGCLGEGCKTGGEVLTVFWAILNGAM 183
            G++IG   G M F+IFC+Y +GM+YGA +VA D I   C+G GC   G VL +F+ I+  +M
Sbjct:  244 GVAIGVGTGGMFFVIFCTYAIGMYYGAVKVADDQITGSCVGSGCYDSGRVLVIFFCIIMSSM 305          
BLAST of mRNA_H-elongata_contig175107.4560.1 vs. uniprot
Match: A0A5D6Y1J8_9STRA (Uncharacterized protein n=1 Tax=Pythium brassicum TaxID=1485010 RepID=A0A5D6Y1J8_9STRA)

HSP 1 Score: 63.5 bits (153), Expect = 3.710e-10
Identity = 27/63 (42.86%), Postives = 42/63 (66.67%), Query Frame = 1
Query:    1 GISIGRAFGVMMFIIFCSYGLGMWYGATEVARDIRRG--CLGEGCKTGGEVLTVFWAILNGAM 183
            G ++G   GVM F I+C+Y  G+++GA +++ D   G  C   GC  GG+V+T+F+AI+ GAM
Sbjct:  251 GFAVGWGMGVMFFTIYCTYAAGLYFGAVQISNDQLSGTPCTDHGCYDGGKVITIFFAIIMGAM 313          
BLAST of mRNA_H-elongata_contig175107.4560.1 vs. uniprot
Match: A0A067C3J5_SAPPC (Uncharacterized protein n=2 Tax=Saprolegnia parasitica (strain CBS 223.65) TaxID=695850 RepID=A0A067C3J5_SAPPC)

HSP 1 Score: 63.2 bits (152), Expect = 5.120e-10
Identity = 28/62 (45.16%), Postives = 41/62 (66.13%), Query Frame = 1
Query:    1 GISIGRAFGVMMFIIFCSYGLGMWYGATEVARD-IRRGCLGEGCKTGGEVLTVFWAILNGAM 183
            G+++G   G M F+IFC+Y +GM+YGA +VA D I   C+G GC   G VL +F+ I+  +M
Sbjct:  275 GVAVGVGTGGMFFVIFCTYAIGMYYGAVKVADDQITGSCVGSGCYDSGRVLIIFFCIIMSSM 336          
BLAST of mRNA_H-elongata_contig175107.4560.1 vs. uniprot
Match: A0A1V9YWC7_9STRA (ATP-binding Cassette (ABC) Superfamily (Fragment) n=1 Tax=Achlya hypogyna TaxID=1202772 RepID=A0A1V9YWC7_9STRA)

HSP 1 Score: 62.4 bits (150), Expect = 9.430e-10
Identity = 28/62 (45.16%), Postives = 41/62 (66.13%), Query Frame = 1
Query:    1 GISIGRAFGVMMFIIFCSYGLGMWYGATEVARD-IRRGCLGEGCKTGGEVLTVFWAILNGAM 183
            G+++G   G M F++FC+Y LGM+YGA +V+ D I   C G  C  GG VL VF++++  AM
Sbjct:  280 GLAVGLGTGGMFFVVFCTYSLGMYYGAVKVSNDQINDKCTGSHCYDGGRVLIVFFSVVMSAM 341          
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig175107.4560.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LB49_ECTSI1.880e-2578.69Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
K3W853_GLOUD8.820e-1249.21Uncharacterized protein n=2 Tax=Globisporangium ul... [more]
K3W848_GLOUD1.650e-1150.79Uncharacterized protein n=1 Tax=Globisporangium ul... [more]
T0SBB4_SAPDV1.070e-1043.55Uncharacterized protein n=1 Tax=Saprolegnia diclin... [more]
K3W878_GLOUD1.070e-1044.44Uncharacterized protein n=1 Tax=Globisporangium ul... [more]
A0A2D4BTB3_PYTIN1.450e-1039.68Multidrug resistance protein ABC superfamily n=1 T... [more]
T0PWV3_SAPDV2.660e-1046.77ABC transmembrane type-1 domain-containing protein... [more]
A0A5D6Y1J8_9STRA3.710e-1042.86Uncharacterized protein n=1 Tax=Pythium brassicum ... [more]
A0A067C3J5_SAPPC5.120e-1045.16Uncharacterized protein n=2 Tax=Saprolegnia parasi... [more]
A0A1V9YWC7_9STRA9.430e-1045.16ATP-binding Cassette (ABC) Superfamily (Fragment) ... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig175107contigH-elongata_contig175107:129..329 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score102.1
Seed ortholog evalue9e-20
Seed eggNOG ortholog2880.D8LB49
KEGG koko:K05658
KEGG TC3.A.1.201
KEGG Pathwayko02010,ko04976,ko05206,ko05226,map02010,map04976,map05206,map05226
EggNOG free text desc.ATPase activity, coupled to transmembrane movement of substances
EggNOG OGsCOG1132@1,KOG0055@2759
EC3.6.3.44
COG Functional cat.V
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko01000,ko02000,ko04090,ko04147
Hectar predicted targeting categoryno signal peptide or anchor
Exons1
Model size201
Cds size171
Stop1
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930015.8063247-CDS-H-elongata_contig175107:128..2991622930015.8063247-CDS-H-elongata_contig175107:128..299Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig175107 129..299 -
1691679246.9053545-CDS-H-elongata_contig175107:128..2991691679246.9053545-CDS-H-elongata_contig175107:128..299Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig175107 129..299 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930015.8221116-UTR-H-elongata_contig175107:299..3291622930015.8221116-UTR-H-elongata_contig175107:299..329Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig175107 300..329 -
1691679246.914864-UTR-H-elongata_contig175107:299..3291691679246.914864-UTR-H-elongata_contig175107:299..329Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig175107 300..329 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig175107.4560.1prot_H-elongata_contig175107.4560.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig175107 129..299 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig175107.4560.1

>prot_H-elongata_contig175107.4560.1 ID=prot_H-elongata_contig175107.4560.1|Name=mRNA_H-elongata_contig175107.4560.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=57bp
MMFIIFCSYGLGMWYGATEVARDIRRGCLGEGCKTGGEVLTVFWAILNGA
MVCTLP*
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mRNA from alignment at H-elongata_contig175107:129..329-

Legend: UTRCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig175107.4560.1 ID=mRNA_H-elongata_contig175107.4560.1|Name=mRNA_H-elongata_contig175107.4560.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=201bp|location=Sequence derived from alignment at H-elongata_contig175107:129..329- (Himanthalia elongata Himel1 dioecious)
GGCATCAGCATCGGGCGCGCTTTCGGGGTGATGATGTTCATAATCTTCTG CTCCTACGGTCTGGGCATGTGGTACGGCGCGACCGAGGTGGCTCGAGATA TCCGCCGAGGCTGTCTGGGCGAGGGTTGCAAGACCGGAGGCGAGGTCCTG ACCGTCTTCTGGGCCATCCTCAACGGGGCCATGGTGTGCACACTCCCCTA A
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Coding sequence (CDS) from alignment at H-elongata_contig175107:129..329-

>mRNA_H-elongata_contig175107.4560.1 ID=mRNA_H-elongata_contig175107.4560.1|Name=mRNA_H-elongata_contig175107.4560.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=342bp|location=Sequence derived from alignment at H-elongata_contig175107:129..329- (Himanthalia elongata Himel1 dioecious)
ATGATGTTCATAATCTTCTGCTCCTACGGTCTGGGCATGTGGTACGGCGC
GACCGAGGTGGCTCGAGATATCCGCCGAGGCTGTCTGGGCGAGGGTTGCA
AGACCGGAGGCGAGGTCCTGACCGTCTTCTGGGCCATCCTCAACGGGGCC
ATGGTGTGCACACTCCCCTAAATGATGTTCATAATCTTCTGCTCCTACGG
TCTGGGCATGTGGTACGGCGCGACCGAGGTGGCTCGAGATATCCGCCGAG
GCTGTCTGGGCGAGGGTTGCAAGACCGGAGGCGAGGTCCTGACCGTCTTC
TGGGCCATCCTCAACGGGGCCATGGTGTGCACACTCCCCTAA
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