mRNA_H-elongata_contig17495.4556.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig17495.4556.1
Unique NamemRNA_H-elongata_contig17495.4556.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
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BLAST of mRNA_H-elongata_contig17495.4556.1 vs. uniprot
Match: A0A6H5KHJ8_9PHAE (Uncharacterized protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KHJ8_9PHAE)

HSP 1 Score: 72.4 bits (176), Expect = 5.220e-12
Identity = 42/109 (38.53%), Postives = 63/109 (57.80%), Query Frame = 1 
Query:  103 RLGSEECRAFDAYGRDKLNDNGKKLLAFSANHDLGIVNTFFGTLKNGISHIFN----GRENKYIDYTLTRQPDRKHVRNVVVYPHPSFISYHAVVAAHVKLLGHFANNR 417
            R G  + +   AYGRD +N+NG++LL  ++++ L + NT+F T K G+ H F     G+E   +++ LTRQ +R+ VRNV V       S H +V   V+LL   A NR
Sbjct:   11 RGGCCDAKFMGAYGRDIMNNNGERLLGLASDNQLSLTNTYFRTPKGGVQHTFQSSNKGKEKYRLEFILTRQTERRFVRNVSVKRVDFKDSDHNLVLTTVRLLPRVAPNR 119
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig17495.4556.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A6H5KHJ8_9PHAE5.220e-1238.53Uncharacterized protein (Fragment) n=1 Tax=Ectocar... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig17495contigH-elongata_contig17495:88..531 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size444
Cds size444
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930015.3182743-CDS-H-elongata_contig17495:87..5311622930015.3182743-CDS-H-elongata_contig17495:87..531Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig17495 88..531 +
1691679246.72882-CDS-H-elongata_contig17495:87..5311691679246.72882-CDS-H-elongata_contig17495:87..531Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig17495 88..531 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig17495.4556.1prot_H-elongata_contig17495.4556.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig17495 88..531 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig17495.4556.1

>prot_H-elongata_contig17495.4556.1 ID=prot_H-elongata_contig17495.4556.1|Name=mRNA_H-elongata_contig17495.4556.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=148bp
FWAALDKAVKEVLGHEQLFVLWMLTGVHDGGRVGRLGSEECRAFDAYGRD
KLNDNGKKLLAFSANHDLGIVNTFFGTLKNGISHIFNGRENKYIDYTLTR
QPDRKHVRNVVVYPHPSFISYHAVVAAHVKLLGHFANNRPGRRVTRPP
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mRNA from alignment at H-elongata_contig17495:88..531+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig17495.4556.1 ID=mRNA_H-elongata_contig17495.4556.1|Name=mRNA_H-elongata_contig17495.4556.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=444bp|location=Sequence derived from alignment at H-elongata_contig17495:88..531+ (Himanthalia elongata Himel1 dioecious)
TTCTGGGCAGCATTGGACAAGGCCGTTAAAGAAGTACTTGGACACGAACA
GCTGTTCGTGTTATGGATGCTAACGGGCGTACATGACGGCGGGAGGGTGG
GGCGCTTAGGGAGTGAGGAGTGTAGAGCGTTCGACGCCTACGGCCGAGAC
AAGCTGAACGACAATGGTAAGAAACTCCTAGCCTTCTCAGCCAACCATGA
CCTTGGAATCGTTAATACATTCTTCGGCACCCTAAAGAACGGGATATCGC
ATATCTTCAACGGACGAGAAAATAAATACATTGATTACACTCTCACGAGA
CAGCCAGACCGAAAGCATGTCCGGAATGTCGTCGTGTACCCCCACCCATC
ATTCATTTCGTATCACGCCGTCGTCGCAGCTCATGTGAAACTGTTGGGTC
ACTTCGCAAACAACCGACCGGGGAGGAGAGTAACTAGACCGCCC
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Coding sequence (CDS) from alignment at H-elongata_contig17495:88..531+

>mRNA_H-elongata_contig17495.4556.1 ID=mRNA_H-elongata_contig17495.4556.1|Name=mRNA_H-elongata_contig17495.4556.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=888bp|location=Sequence derived from alignment at H-elongata_contig17495:88..531+ (Himanthalia elongata Himel1 dioecious)
TTCTGGGCAGCATTGGACAAGGCCGTTAAAGAAGTACTTGGACACGAACA
GCTGTTCGTGTTATGGATGCTAACGGGCGTACATGACGGCGGGAGGGTGG
GGCGCTTAGGGAGTGAGGAGTGTAGAGCGTTCGACGCCTACGGCCGAGAC
AAGCTGAACGACAATGGTAAGAAACTCCTAGCCTTCTCAGCCAACCATGA
CCTTGGAATCGTTAATACATTCTTCGGCACCCTAAAGAACGGGATATCGC
ATATCTTCAACGGACGAGAAAATAAATACATTGATTACACTCTCACGAGA
CAGCCAGACCGAAAGCATGTCCGGAATGTCGTCGTGTACCCCCACCCATC
ATTCATTTCGTATCACGCCGTCGTCGCAGCTCATGTGAAACTGTTGGGTC
ACTTCGCAAACAACCGACCGGGGAGGAGAGTAACTAGACCGCCCTTCTGG
GCAGCATTGGACAAGGCCGTTAAAGAAGTACTTGGACACGAACAGCTGTT
CGTGTTATGGATGCTAACGGGCGTACATGACGGCGGGAGGGTGGGGCGCT
TAGGGAGTGAGGAGTGTAGAGCGTTCGACGCCTACGGCCGAGACAAGCTG
AACGACAATGGTAAGAAACTCCTAGCCTTCTCAGCCAACCATGACCTTGG
AATCGTTAATACATTCTTCGGCACCCTAAAGAACGGGATATCGCATATCT
TCAACGGACGAGAAAATAAATACATTGATTACACTCTCACGAGACAGCCA
GACCGAAAGCATGTCCGGAATGTCGTCGTGTACCCCCACCCATCATTCAT
TTCGTATCACGCCGTCGTCGCAGCTCATGTGAAACTGTTGGGTCACTTCG
CAAACAACCGACCGGGGAGGAGAGTAACTAGACCGCCC
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