mRNA_H-elongata_contig174915.4554.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig174915.4554.1
Unique NamemRNA_H-elongata_contig174915.4554.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
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BLAST of mRNA_H-elongata_contig174915.4554.1 vs. uniprot
Match: D8LN71_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LN71_ECTSI)

HSP 1 Score: 125 bits (313), Expect = 2.730e-31
Identity = 60/64 (93.75%), Postives = 61/64 (95.31%), Query Frame = 1 
Query:    1 MGFVKVWRTVLEGALLEARSGNTDVARKVLKYLMTHVPWYGPIYYEAFRLEEKAEHFESALAIV 192
            +G   VWRTVLEGALLEARSGNTDVARKVLKYLMTHVPWYGPIYYEAFRLEEKAEHFESALAIV
Sbjct:  189 VGIENVWRTVLEGALLEARSGNTDVARKVLKYLMTHVPWYGPIYYEAFRLEEKAEHFESALAIV 252
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BLAST of mRNA_H-elongata_contig174915.4554.1 vs. uniprot
Match: A0A6H5KEQ7_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KEQ7_9PHAE)

HSP 1 Score: 125 bits (313), Expect = 2.740e-31
Identity = 60/64 (93.75%), Postives = 61/64 (95.31%), Query Frame = 1 
Query:    1 MGFVKVWRTVLEGALLEARSGNTDVARKVLKYLMTHVPWYGPIYYEAFRLEEKAEHFESALAIV 192
            +G   VWRTVLEGALLEARSGNTDVARKVLKYLMTHVPWYGPIYYEAFRLEEKAEHFESALAIV
Sbjct:  355 VGIENVWRTVLEGALLEARSGNTDVARKVLKYLMTHVPWYGPIYYEAFRLEEKAEHFESALAIV 418
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BLAST of mRNA_H-elongata_contig174915.4554.1 vs. uniprot
Match: A0A7S4DG20_HETAK (Hypothetical protein (Fragment) n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S4DG20_HETAK)

HSP 1 Score: 105 bits (261), Expect = 1.060e-25
Identity = 50/64 (78.12%), Postives = 54/64 (84.38%), Query Frame = 1 
Query:    4 GFVKVWRTVLEGALLEARSGNTDVARKVLKYLMTHVPWYGPIYYEAFRLEEKAEHFESALAIVE 195
            G  KVWRTVLEGALLEAR+G + VARKV KYLM  VPWYGPIY+EAFRLEEK EHF SAL I+E
Sbjct:  165 GVEKVWRTVLEGALLEARAGRSAVARKVFKYLMQQVPWYGPIYFEAFRLEEKNEHFRSALQIIE 228
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BLAST of mRNA_H-elongata_contig174915.4554.1 vs. uniprot
Match: UPI000644C74F (hypothetical protein n=1 Tax=Acytostelium subglobosum LB1 TaxID=1410327 RepID=UPI000644C74F)

HSP 1 Score: 99.4 bits (246), Expect = 3.020e-22
Identity = 43/61 (70.49%), Postives = 51/61 (83.61%), Query Frame = 1 
Query:   13 KVWRTVLEGALLEARSGNTDVARKVLKYLMTHVPWYGPIYYEAFRLEEKAEHFESALAIVE 195
            K WR VLEG LLEAR+GN DVARK+ KYLM HVPWYGPIY EA++LEE+ E +E A+AI+E
Sbjct:  585 KTWRAVLEGGLLEARAGNVDVARKIFKYLMQHVPWYGPIYQEAYKLEERCEEYERAIAIIE 645
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BLAST of mRNA_H-elongata_contig174915.4554.1 vs. uniprot
Match: F4PZP7_CAVFA (Uncharacterized protein n=1 Tax=Cavenderia fasciculata (strain SH3) TaxID=1054147 RepID=F4PZP7_CAVFA)

HSP 1 Score: 98.2 bits (243), Expect = 7.770e-22
Identity = 43/61 (70.49%), Postives = 51/61 (83.61%), Query Frame = 1 
Query:   13 KVWRTVLEGALLEARSGNTDVARKVLKYLMTHVPWYGPIYYEAFRLEEKAEHFESALAIVE 195
            K WR V+EG LLEAR+GN DVARK+ KYLM HVPWYGPIY EA++LEE+ E +E A+AIVE
Sbjct:  987 KTWRAVMEGGLLEARAGNIDVARKIFKYLMKHVPWYGPIYQEAYKLEERCEDYERAIAIVE 1047
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BLAST of mRNA_H-elongata_contig174915.4554.1 vs. uniprot
Match: UPI000644F0CF (hypothetical protein n=1 Tax=Acytostelium subglobosum LB1 TaxID=1410327 RepID=UPI000644F0CF)

HSP 1 Score: 97.1 bits (240), Expect = 1.960e-21
Identity = 42/61 (68.85%), Postives = 51/61 (83.61%), Query Frame = 1 
Query:   13 KVWRTVLEGALLEARSGNTDVARKVLKYLMTHVPWYGPIYYEAFRLEEKAEHFESALAIVE 195
            K WR V+EG LLEAR+GN +VARK+ KYLM HVPWYGPIY EA++LEE+ E +E A+AIVE
Sbjct:  732 KTWRAVMEGGLLEARAGNIEVARKIFKYLMKHVPWYGPIYQEAYKLEERCEEYERAIAIVE 792
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BLAST of mRNA_H-elongata_contig174915.4554.1 vs. uniprot
Match: A0A151ZCQ4_9MYCE (Uncharacterized protein n=1 Tax=Tieghemostelium lacteum TaxID=361077 RepID=A0A151ZCQ4_9MYCE)

HSP 1 Score: 97.1 bits (240), Expect = 1.970e-21
Identity = 41/61 (67.21%), Postives = 51/61 (83.61%), Query Frame = 1 
Query:   13 KVWRTVLEGALLEARSGNTDVARKVLKYLMTHVPWYGPIYYEAFRLEEKAEHFESALAIVE 195
            K WR V+EG LLEAR+GN D+ARK+ KYLM HVPWYGPIY EA++LEE+ E +E A++IVE
Sbjct:  767 KTWRAVMEGGLLEARAGNIDIARKIFKYLMKHVPWYGPIYQEAYKLEERCEEYERAISIVE 827
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BLAST of mRNA_H-elongata_contig174915.4554.1 vs. uniprot
Match: D3BQ41_POLPP (Uncharacterized protein n=1 Tax=Polysphondylium pallidum (strain ATCC 26659 / Pp 5 / PN500) TaxID=670386 RepID=D3BQ41_POLPP)

HSP 1 Score: 96.7 bits (239), Expect = 2.680e-21
Identity = 41/61 (67.21%), Postives = 51/61 (83.61%), Query Frame = 1 
Query:   13 KVWRTVLEGALLEARSGNTDVARKVLKYLMTHVPWYGPIYYEAFRLEEKAEHFESALAIVE 195
            K WR V+EG LLEAR+GN ++ARK+ KYLM HVPWYGPIY EA++LEE+ E +E A+AIVE
Sbjct:  687 KTWRAVMEGGLLEARAGNIEIARKIFKYLMKHVPWYGPIYQEAYKLEERCEEYERAIAIVE 747
[Close]
BLAST of mRNA_H-elongata_contig174915.4554.1 vs. uniprot
Match: UPI00004E438E (hypothetical protein n=1 Tax=Dictyostelium discoideum AX4 TaxID=352472 RepID=UPI00004E438E)

HSP 1 Score: 96.3 bits (238), Expect = 3.590e-21
Identity = 42/61 (68.85%), Postives = 50/61 (81.97%), Query Frame = 1 
Query:   13 KVWRTVLEGALLEARSGNTDVARKVLKYLMTHVPWYGPIYYEAFRLEEKAEHFESALAIVE 195
            K WR V+EG LLEAR+GN DVARK+ KYLM HVPWYGPIY EA++LEE+ E +E A+ IVE
Sbjct:  315 KTWRAVMEGGLLEARAGNIDVARKIFKYLMKHVPWYGPIYQEAYKLEERCEEYERAINIVE 375
[Close]
BLAST of mRNA_H-elongata_contig174915.4554.1 vs. uniprot
Match: F0ZHK8_DICPU (Uncharacterized protein n=1 Tax=Dictyostelium purpureum TaxID=5786 RepID=F0ZHK8_DICPU)

HSP 1 Score: 96.3 bits (238), Expect = 3.590e-21
Identity = 42/61 (68.85%), Postives = 50/61 (81.97%), Query Frame = 1 
Query:   13 KVWRTVLEGALLEARSGNTDVARKVLKYLMTHVPWYGPIYYEAFRLEEKAEHFESALAIVE 195
            K WR V+EG LLEAR+GN DVARK+ KYLM HVPWYGPIY EA++LEE+ E +E A+ IVE
Sbjct:  331 KTWRAVMEGGLLEARAGNIDVARKIFKYLMKHVPWYGPIYQEAYKLEERCEEYERAINIVE 391
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig174915.4554.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LN71_ECTSI2.730e-3193.75Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5KEQ7_9PHAE2.740e-3193.75Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A7S4DG20_HETAK1.060e-2578.13Hypothetical protein (Fragment) n=1 Tax=Heterosigm... [more]
UPI000644C74F3.020e-2270.49hypothetical protein n=1 Tax=Acytostelium subglobo... [more]
F4PZP7_CAVFA7.770e-2270.49Uncharacterized protein n=1 Tax=Cavenderia fascicu... [more]
UPI000644F0CF1.960e-2168.85hypothetical protein n=1 Tax=Acytostelium subglobo... [more]
A0A151ZCQ4_9MYCE1.970e-2167.21Uncharacterized protein n=1 Tax=Tieghemostelium la... [more]
D3BQ41_POLPP2.680e-2167.21Uncharacterized protein n=1 Tax=Polysphondylium pa... [more]
UPI00004E438E3.590e-2168.85hypothetical protein n=1 Tax=Dictyostelium discoid... [more]
F0ZHK8_DICPU3.590e-2168.85Uncharacterized protein n=1 Tax=Dictyostelium purp... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig174915contigH-elongata_contig174915:97..1263 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score125.9
Seed ortholog evalue9.8e-27
Seed eggNOG ortholog2880.D8LN71
EggNOG OGs28JG8@1,2QRVD@2759
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Hectar predicted targeting categoryother localisation
Exons2
Model size285
Cds size285
Stop1
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930015.150399-CDS-H-elongata_contig174915:96..2421622930015.150399-CDS-H-elongata_contig174915:96..242Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig174915 97..242 +
1691679246.637927-CDS-H-elongata_contig174915:96..2421691679246.637927-CDS-H-elongata_contig174915:96..242Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig174915 97..242 +
1622930015.16498-CDS-H-elongata_contig174915:1124..12631622930015.16498-CDS-H-elongata_contig174915:1124..1263Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig174915 1125..1263 +
1691679246.649703-CDS-H-elongata_contig174915:1124..12631691679246.649703-CDS-H-elongata_contig174915:1124..1263Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig174915 1125..1263 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig174915.4554.1prot_H-elongata_contig174915.4554.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig174915 97..1263 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig174915.4554.1

>prot_H-elongata_contig174915.4554.1 ID=prot_H-elongata_contig174915.4554.1|Name=mRNA_H-elongata_contig174915.4554.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=95bp
MGFVKVWRTVLEGALLEARSGNTDVARKVLKYLMTHVPWYGPIYYEAFRL
EEKAEHFESALAIVERGLQEIPRYGPLWFGAFRLSEKLGETSVF*
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mRNA from alignment at H-elongata_contig174915:97..1263+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig174915.4554.1 ID=mRNA_H-elongata_contig174915.4554.1|Name=mRNA_H-elongata_contig174915.4554.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=1167bp|location=Sequence derived from alignment at H-elongata_contig174915:97..1263+ (Himanthalia elongata Himel1 dioecious)
ATGGGGTTTGTCAAGGTCTGGCGCACGGTCCTGGAAGGAGCCTTGCTGGA
GGCACGCTCTGGCAATACGGACGTCGCTCGCAAGGTTCTCAAGTACCTCA
TGACCCACGTTCCCTGGTATGGTCCCATCTACTACGAAGCTTTCCGGTGA
GTAACACACCCTCATCCACGCCGCTTTATGCCCGGGATGACATGACGAAG
CGTGTGTTATGGTTTATACGGAAGTAGTGGGAGTTCGTAAAGTGATTCGG
GCGTTATGAGGGACGAGACCGGGCGGGGAAGAGGGGTGAGGTGTCATTTT
GCATCGCTTGTTATTGTTGACTTCTGCGGTTGGGCGAGAAGAAAAAGACC
AGCCGTCGAAACGGTCTGTGTTGTCGTGTGGTCCCTCCCCTCCGTCCATA
AGTATGATCGGTTGATGTTCCGTGTGGTCGTTGGGGTTCCGTTTAATCAG
TAGGTAGCCCATCGTTCGGTCCGTCGGTTTATCAGTCTAATCGGTGGTCA
TATTCCGTGGAATCGGGAGGTGCCCCGTACAATTTACTGGCCCTCCTCGT
GATTGTTAAAAGCCAGTATGTCTAATCGGTAGCCATTTTTTTTGTAATCG
GTAGCTATCCGTTGTATCTGGTAATGATTCCGTGCGATCGGCAAATACGT
CATCGTTCTGTCCGGCGGTGCATCCGTTTCCTCGTTCGGTGGCACTCCAT
CCCCTCCCTCTAATCCCTTAACGGTTTTCCATTTAATCCCTTGACGGTTT
TCCATTTAAATCTTCACGGTTTTCCATTTAATCCCTTCACGGTTTTCCAT
TTAACCCCTTCACGGTTTTCCTTTTAATCCCTTTTACGGTTTTCCATTTA
ATCCCTTTTACGGTTTTCCATTTAATCCCTTGACGGGTTTCCATTTAAAC
CCTTAACGGTTTTCCATTTAACCCCTTCCCTTCACGGTTTTCCATTTAAC
TTCACGGTTTTCCATTTAACTTCACGGTTTTCCATTTAATCCCTTCACGG
TTTTCCTTCCACGTGTTGGTTTGGGCAGTCTGGAGGAGAAGGCGGAGCAC
TTCGAGAGCGCGCTGGCAATCGTAGAACGTGGACTGCAAGAAATACCGCG
CTACGGGCCGCTCTGGTTCGGCGCGTTCCGTCTTAGCGAAAAACTCGGTG
AGACAAGCGTATTCTAA
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Coding sequence (CDS) from alignment at H-elongata_contig174915:97..1263+

>mRNA_H-elongata_contig174915.4554.1 ID=mRNA_H-elongata_contig174915.4554.1|Name=mRNA_H-elongata_contig174915.4554.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=570bp|location=Sequence derived from alignment at H-elongata_contig174915:97..1263+ (Himanthalia elongata Himel1 dioecious)
ATGGGGTTTGTCAAGGTCTGGCGCACGGTCCTGGAAGGAGCCTTGCTGGA
GGCACGCTCTGGCAATACGGACGTCGCTCGCAAGGTTCTCAAGTACCTCA
TGACCCACGTTCCCTGGTATGGTCCCATCTACTACGAAGCTTTCCGATGG
GGTTTGTCAAGGTCTGGCGCACGGTCCTGGAAGGAGCCTTGCTGGAGGCA
CGCTCTGGCAATACGGACGTCGCTCGCAAGGTTCTCAAGTACCTCATGAC
CCACGTTCCCTGGTATGGTCCCATCTACTACGAAGCTTTCCGTCTGGAGG
AGAAGGCGGAGCACTTCGAGAGCGCGCTGGCAATCGTAGAACGTGGACTG
CAAGAAATACCGCGCTACGGGCCGCTCTGGTTCGGCGCGTTCCGTCTTAG
CGAAAAACTCGGTGAGACAAGCGTATTCTAATCTGGAGGAGAAGGCGGAG
CACTTCGAGAGCGCGCTGGCAATCGTAGAACGTGGACTGCAAGAAATACC
GCGCTACGGGCCGCTCTGGTTCGGCGCGTTCCGTCTTAGCGAAAAACTCG
GTGAGACAAGCGTATTCTAA
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