mRNA_H-elongata_contig174354.4532.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig174354.4532.1
Unique NamemRNA_H-elongata_contig174354.4532.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
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BLAST of mRNA_H-elongata_contig174354.4532.1 vs. uniprot
Match: A0A6P8I652_ACTTE (piggyBac transposable element-derived protein 4-like n=1 Tax=Actinia tenebrosa TaxID=6105 RepID=A0A6P8I652_ACTTE)

HSP 1 Score: 53.5 bits (127), Expect = 3.410e-6
Identity = 34/97 (35.05%), Postives = 47/97 (48.45%), Query Frame = 1 
Query:    4 AHLKDSGIMLACDNFFTSPILFLCLAACGVYAVGTLRSNLRGAAEAKTWQRENNEEVNNSGL---RKRSQMVFARMGDIAFTLWKDSRDVFFASTIH 285
            + L+D GI++  DNFFT   L   L     Y VGTLR+N +G  EA          + N+ L    KR        G+I   +WKD++ V F S +H
Sbjct:   64 SELRDQGIIVCIDNFFTGFPLMKELRQWSTYVVGTLRTNRKGYPEA----------LKNANLLKGMKRGDYHTVACGEIVCAVWKDTKHVTFVSNVH 150
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BLAST of mRNA_H-elongata_contig174354.4532.1 vs. uniprot
Match: A0A3B4TFC7_SERDU (DDE_Tnp_1_7 domain-containing protein n=3 Tax=Seriola TaxID=8160 RepID=A0A3B4TFC7_SERDU)

HSP 1 Score: 52.0 bits (123), Expect = 1.290e-5
Identity = 33/89 (37.08%), Postives = 47/89 (52.81%), Query Frame = 1 
Query:   19 SGIMLACDNFFTSPILFLCLAACGVYAVGTLRSNLRGAAEAKTWQRENNEEVNNSGLRKRSQMVFARMGDIAFTLWKDSRDVFFASTIH 285
            SG  L CDN++TSP LF+ L +  V A GT R N R   E++T ++++           R  + + R G + F  W DS+ V   STIH
Sbjct:  379 SGYHLYCDNYYTSPKLFMELCSLKVCACGTYRDNRR---ESRTKKKDS-----------RGTIRWMRNGPLLFVKWMDSKQVSICSTIH 453
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BLAST of mRNA_H-elongata_contig174354.4532.1 vs. uniprot
Match: A0A3B4TF50_SERDU (DDE_Tnp_1_7 domain-containing protein n=1 Tax=Seriola dumerili TaxID=41447 RepID=A0A3B4TF50_SERDU)

HSP 1 Score: 51.2 bits (121), Expect = 2.370e-5
Identity = 32/89 (35.96%), Postives = 47/89 (52.81%), Query Frame = 1 
Query:   19 SGIMLACDNFFTSPILFLCLAACGVYAVGTLRSNLRGAAEAKTWQRENNEEVNNSGLRKRSQMVFARMGDIAFTLWKDSRDVFFASTIH 285
            SG  L CDN++TSP LF+ L +  V+A GT R N R   E++T ++++           R  + + R G + F  W D+  V   STIH
Sbjct:  335 SGYHLYCDNYYTSPKLFMELCSLKVHACGTYRDNRR---ESRTKKKDS-----------RGTIRWMRNGPLLFVKWMDTTQVSMCSTIH 409
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BLAST of mRNA_H-elongata_contig174354.4532.1 vs. uniprot
Match: A0A3Q0QQV4_AMPCI (DDE_Tnp_1_7 domain-containing protein n=3 Tax=Heroini TaxID=318529 RepID=A0A3Q0QQV4_AMPCI)

HSP 1 Score: 50.4 bits (119), Expect = 4.430e-5
Identity = 34/90 (37.78%), Postives = 46/90 (51.11%), Query Frame = 1 
Query:   19 SGIMLACDNFFTSPILFLCLAACGVYAVGTLRSNLRGAAEAKTWQRENNEEVNN-SGLRKRSQMVFARMGDIAFTLWKDSRDVFFASTIH 285
            +G  L  DNF+TSP LF  L    + A GT+R N  G    KT       ++N    +  R  + + R   + F  W+D+RDVFF STIH
Sbjct:  305 TGYKLYLDNFYTSPTLFRDLYQQRIRACGTMRIN--GVGYPKT-------KINALDSIALRGSIRWLREDPLLFVQWRDTRDVFFCSTIH 385
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig174354.4532.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 4
Match NameE-valueIdentityDescription
A0A6P8I652_ACTTE3.410e-635.05piggyBac transposable element-derived protein 4-li... [more]
A0A3B4TFC7_SERDU1.290e-537.08DDE_Tnp_1_7 domain-containing protein n=3 Tax=Seri... [more]
A0A3B4TF50_SERDU2.370e-535.96DDE_Tnp_1_7 domain-containing protein n=1 Tax=Seri... [more]
A0A3Q0QQV4_AMPCI4.430e-537.78DDE_Tnp_1_7 domain-containing protein n=3 Tax=Hero... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig174354contigH-elongata_contig174354:920..1204 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Hectar predicted targeting categorysignal peptide
Exons1
Model size285
Cds size258
Stop0
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930011.5139275-CDS-H-elongata_contig174354:919..11771622930011.5139275-CDS-H-elongata_contig174354:919..1177Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig174354 920..1177 -
1691679245.3058972-CDS-H-elongata_contig174354:919..11771691679245.3058972-CDS-H-elongata_contig174354:919..1177Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig174354 920..1177 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930011.532037-UTR-H-elongata_contig174354:1177..12041622930011.532037-UTR-H-elongata_contig174354:1177..1204Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig174354 1178..1204 -
1691679245.3217807-UTR-H-elongata_contig174354:1177..12041691679245.3217807-UTR-H-elongata_contig174354:1177..1204Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig174354 1178..1204 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig174354.4532.1prot_H-elongata_contig174354.4532.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig174354 920..1177 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig174354.4532.1

>prot_H-elongata_contig174354.4532.1 ID=prot_H-elongata_contig174354.4532.1|Name=mRNA_H-elongata_contig174354.4532.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=86bp
MLACDNFFTSPILFLCLAACGVYAVGTLRSNLRGAAEAKTWQRENNEEVN
NSGLRKRSQMVFARMGDIAFTLWKDSRDVFFASTIH
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mRNA from alignment at H-elongata_contig174354:920..1204-

Legend: UTRCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig174354.4532.1 ID=mRNA_H-elongata_contig174354.4532.1|Name=mRNA_H-elongata_contig174354.4532.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=285bp|location=Sequence derived from alignment at H-elongata_contig174354:920..1204- (Himanthalia elongata Himel1 dioecious)
GACGCCCACTTGAAGGATTCCGGCATCATGCTTGCGTGTGACAATTTCTT
TACTTCCCCTATCCTCTTCTTGTGCTTGGCGGCTTGTGGCGTCTATGCCG
TGGGTACACTTCGATCCAACCTCCGTGGCGCGGCGGAAGCAAAGACTTGG
CAACGTGAGAATAACGAAGAAGTCAATAACAGTGGGCTTCGAAAAAGGAG
TCAGATGGTCTTCGCGAGGATGGGCGATATTGCATTTACGTTGTGGAAAG
ACTCACGAGATGTGTTTTTTGCCTCCACGATCCAC
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Coding sequence (CDS) from alignment at H-elongata_contig174354:920..1204-

>mRNA_H-elongata_contig174354.4532.1 ID=mRNA_H-elongata_contig174354.4532.1|Name=mRNA_H-elongata_contig174354.4532.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=516bp|location=Sequence derived from alignment at H-elongata_contig174354:920..1204- (Himanthalia elongata Himel1 dioecious)
ATGCTTGCGTGTGACAATTTCTTTACTTCCCCTATCCTCTTCTTGTGCTT
GGCGGCTTGTGGCGTCTATGCCGTGGGTACACTTCGATCCAACCTCCGTG
GCGCGGCGGAAGCAAAGACTTGGCAACGTGAGAATAACGAAGAAGTCAAT
AACAGTGGGCTTCGAAAAAGGAGTCAGATGGTCTTCGCGAGGATGGGCGA
TATTGCATTTACGTTGTGGAAAGACTCACGAGATGTGTTTTTTGCCTCCA
CGATCCACATGCTTGCGTGTGACAATTTCTTTACTTCCCCTATCCTCTTC
TTGTGCTTGGCGGCTTGTGGCGTCTATGCCGTGGGTACACTTCGATCCAA
CCTCCGTGGCGCGGCGGAAGCAAAGACTTGGCAACGTGAGAATAACGAAG
AAGTCAATAACAGTGGGCTTCGAAAAAGGAGTCAGATGGTCTTCGCGAGG
ATGGGCGATATTGCATTTACGTTGTGGAAAGACTCACGAGATGTGTTTTT
TGCCTCCACGATCCAC
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