mRNA_H-elongata_contig17388.4514.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig17388.4514.1
Unique NamemRNA_H-elongata_contig17388.4514.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
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BLAST of mRNA_H-elongata_contig17388.4514.1 vs. uniprot
Match: D8LEN2_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LEN2_ECTSI)

HSP 1 Score: 183 bits (465), Expect = 1.960e-50
Identity = 102/174 (58.62%), Postives = 121/174 (69.54%), Query Frame = 1 
Query:    1 DHLGSGSLLCAYTLQLLLLYLPASLKESVLFRDIALRFVYFEAQLSFAKTHGQIGAQDADSKGNSTGLGAGNE-----GSAHPPGGSTKRSPGYVSKGDGESAKEEERPLFCVETAARLLEIAWETYNDPEGFENPNNYHFEEADFRRVGFKLVAHIFNAEHDTHCFVLQNRPK 507
            DHLGS S LCAY LQLLLL+LP+S KES LFRDIA+RFVYFE Q+  AK   + G      +GN+     G+E     G A  P  + K SPG V K D     EE++PLFCVETAA LLE+AWE YNDP GFENPNNYHF  ADF R+GF+LV HI N +HDTHCF+L++ P+
Sbjct:  772 DHLGSVSTLCAYALQLLLLFLPSSFKESKLFRDIAVRFVYFEEQVPVAKRKRREGGGAGGVEGNAGSGQEGDEDHMFRGGALNPWDTPKMSPGDVGKED-----EEDKPLFCVETAAWLLELAWEAYNDPIGFENPNNYHFGVADFARMGFELVRHIHNVQHDTHCFILKDVPR 940
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BLAST of mRNA_H-elongata_contig17388.4514.1 vs. uniprot
Match: A0A6H5KRH3_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KRH3_9PHAE)

HSP 1 Score: 182 bits (461), Expect = 7.400e-50
Identity = 100/173 (57.80%), Postives = 120/173 (69.36%), Query Frame = 1 
Query:    1 DHLGSGSLLCAYTLQLLLLYLPASLKESVLFRDIALRFVYFEAQLSFAKTH----GQIGAQDADSKGNSTGLGAGNEGSAHPPGGSTKRSPGYVSKGDGESAKEEERPLFCVETAARLLEIAWETYNDPEGFENPNNYHFEEADFRRVGFKLVAHIFNAEHDTHCFVLQNRPK 507
            DHLGS S LCAY LQLLLL+LP+S KES LFRDIA+RFVYFE Q+  AK+     G +G +     G         +G A  P  ++K SPG V K D     EE++PLFCVETAA LLE+AWE YNDP GFENPNNYHF  ADF R+GF+LV HI N +HDTHCF+L++ P+
Sbjct:  938 DHLGSMSTLCAYALQLLLLFLPSSFKESKLFRDIAVRFVYFEEQVPVAKSKRRGGGAVGVEGNAGSGQEGDEDHIFQGGALNPWDTSKTSPGDVGKED-----EEDKPLFCVETAAWLLELAWEAYNDPIGFENPNNYHFGVADFARMGFELVRHIHNVQHDTHCFILKDVPR 1105
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BLAST of mRNA_H-elongata_contig17388.4514.1 vs. uniprot
Match: D8LEN4_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LEN4_ECTSI)

HSP 1 Score: 164 bits (414), Expect = 1.610e-43
Identity = 90/170 (52.94%), Postives = 114/170 (67.06%), Query Frame = 1 
Query:    1 DHLGSGSLLCAYTLQLLLLYLPASLKESVLFRDIALRFVYFEAQLSFAKTHGQIGAQDADSKGNST-GLGAGNEGSAHPPGGSTKRSPGYVSKGDGESAKEEERPLFCVETAARLLEIAWETYNDPEGFENPNNYHFEEADFRRVGFKLVAHIFNAEHDTHCFVLQNRPK 507
            DHLGS S+LCAY LQL LL+LP+S KES LFR+I++RFV+FE QL  A    + G  DA + G      G   +G A  PG   K SPG V K D     E+E+P+FCVETAA LLE+AWE Y DP GF+NP+NYH       R+GF+LV HI N +HDT+CF+L++ P+
Sbjct:  462 DHLGSVSILCAYALQLFLLFLPSSFKESKLFRNISVRFVFFEEQLPIAMRKSRDGGVDATAGGGQARAKGPTCQGGALNPGEHAKTSPGDVGKED-----EDEKPVFCVETAAWLLELAWEAYADPIGFKNPHNYHIRVQRLARMGFELVRHIHNVDHDTNCFILKDVPR 626
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BLAST of mRNA_H-elongata_contig17388.4514.1 vs. uniprot
Match: D7G0U2_ECTSI (Lipase_3 domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G0U2_ECTSI)

HSP 1 Score: 83.6 bits (205), Expect = 1.790e-15
Identity = 60/126 (47.62%), Postives = 72/126 (57.14%), Query Frame = 1 
Query:    1 DHLGSGSLLCAYTLQLLLLYLPASLKESVLFRDIALRFVYFEAQLSFAK-------THGQIG---AQDADSKGNSTGLGAGNEGSAHPPGGSTKRSPGYVSKGDGESAKEEERPLFCVETAARLLE 348
            DHL + S+LCAYTLQL +L+LP+SLKES   R+IA+RFVYFE  L  A         HG+     A+D D     T L  G     HP     K SPG V K D     EEE+P+FCVETAA  L+
Sbjct:  656 DHLATVSILCAYTLQLFVLFLPSSLKESKFLRNIAVRFVYFEEHLPIAMRKSRGRGVHGRARGGQARDEDPIFQGTALNRGE----HP-----KTSPGDVGKED-----EEEKPMFCVETAAWFLQ 767
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BLAST of mRNA_H-elongata_contig17388.4514.1 vs. uniprot
Match: A0A5D6XZI1_9STRA (Lipase_3 domain-containing protein n=1 Tax=Pythium brassicum TaxID=1485010 RepID=A0A5D6XZI1_9STRA)

HSP 1 Score: 55.8 bits (133), Expect = 6.760e-6
Identity = 28/59 (47.46%), Postives = 37/59 (62.71%), Query Frame = 1 
Query:  313 LFCVETAARLLEIAWETYNDPEGFENPNNYHFEEADFRRVGFKLVAHIFNAEHDTHCFV 489
            LFCVETAA LLE+AW+ Y DP G   P+   + E +    GF+LV H+ ++  DTH  V
Sbjct:  584 LFCVETAAWLLELAWQAYFDPPG--RPSASGYGELNLDACGFELVTHLRSSLTDTHVVV 640
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BLAST of mRNA_H-elongata_contig17388.4514.1 vs. uniprot
Match: A0A1V9ZIX8_9STRA (Lipase_3 domain-containing protein n=1 Tax=Achlya hypogyna TaxID=1202772 RepID=A0A1V9ZIX8_9STRA)

HSP 1 Score: 55.5 bits (132), Expect = 8.900e-6
Identity = 28/65 (43.08%), Postives = 38/65 (58.46%), Query Frame = 1 
Query:  307 RPLFCVETAARLLEIAWETYNDPEGFENPNNYHFEEADFRRVGFKLVAHIFNAEHDTHCFVLQNR 501
            RP+FC+ETA  L+++AW+ Y DP G  NP+            GF+LVAH+ +   DTH  V  NR
Sbjct:  547 RPVFCLETAEWLVQLAWQAYFDPLG--NPSASGAGTQSLEAFGFELVAHLRHDLVDTHALVCVNR 609
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BLAST of mRNA_H-elongata_contig17388.4514.1 vs. uniprot
Match: A0A2D4BZY8_PYTIN (Lipase_3 domain-containing protein n=1 Tax=Pythium insidiosum TaxID=114742 RepID=A0A2D4BZY8_PYTIN)

HSP 1 Score: 53.5 bits (127), Expect = 4.020e-5
Identity = 25/59 (42.37%), Postives = 35/59 (59.32%), Query Frame = 1 
Query:  313 LFCVETAARLLEIAWETYNDPEGFENPNNYHFEEADFRRVGFKLVAHIFNAEHDTHCFV 489
            LFCVETA R+LE+AW+ Y DP G  +P+ Y   +      G++LVA +     DT+  V
Sbjct:  517 LFCVETAQRMLELAWQAYFDPPGSPSPSGY--GQLSLEDYGYELVAQLRGPTTDTYALV 573
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig17388.4514.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 7
Match NameE-valueIdentityDescription
D8LEN2_ECTSI1.960e-5058.62Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5KRH3_9PHAE7.400e-5057.80Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D8LEN4_ECTSI1.610e-4352.94Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
D7G0U2_ECTSI1.790e-1547.62Lipase_3 domain-containing protein n=1 Tax=Ectocar... [more]
A0A5D6XZI1_9STRA6.760e-647.46Lipase_3 domain-containing protein n=1 Tax=Pythium... [more]
A0A1V9ZIX8_9STRA8.900e-643.08Lipase_3 domain-containing protein n=1 Tax=Achlya ... [more]
A0A2D4BZY8_PYTIN4.020e-542.37Lipase_3 domain-containing protein n=1 Tax=Pythium... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig17388contigH-elongata_contig17388:1075..3260 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score189.5
Seed ortholog evalue1.3e-45
Seed eggNOG ortholog2880.D8LEN2
EggNOG free text desc.phospholipase A1 activity
EggNOG OGsKOG4569@1,KOG4569@2759
COG Functional cat.G
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Hectar predicted targeting categorysignal peptide
Exons3
Model size528
Cds size528
Stop1
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig17388.4514.1prot_H-elongata_contig17388.4514.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig17388 1075..3260 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930009.9353483-CDS-H-elongata_contig17388:1074..12641622930009.9353483-CDS-H-elongata_contig17388:1074..1264Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig17388 1075..1264 -
1691679244.6086683-CDS-H-elongata_contig17388:1074..12641691679244.6086683-CDS-H-elongata_contig17388:1074..1264Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig17388 1075..1264 -
1622930009.949962-CDS-H-elongata_contig17388:2071..23041622930009.949962-CDS-H-elongata_contig17388:2071..2304Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig17388 2072..2304 -
1691679244.6208787-CDS-H-elongata_contig17388:2071..23041691679244.6208787-CDS-H-elongata_contig17388:2071..2304Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig17388 2072..2304 -
1622930009.96519-CDS-H-elongata_contig17388:3155..32601622930009.96519-CDS-H-elongata_contig17388:3155..3260Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig17388 3156..3260 -
1691679244.631987-CDS-H-elongata_contig17388:3155..32601691679244.631987-CDS-H-elongata_contig17388:3155..3260Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig17388 3156..3260 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig17388.4514.1

>prot_H-elongata_contig17388.4514.1 ID=prot_H-elongata_contig17388.4514.1|Name=mRNA_H-elongata_contig17388.4514.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=176bp
DHLGSGSLLCAYTLQLLLLYLPASLKESVLFRDIALRFVYFEAQLSFAKT
HGQIGAQDADSKGNSTGLGAGNEGSAHPPGGSTKRSPGYVSKGDGESAKE
EERPLFCVETAARLLEIAWETYNDPEGFENPNNYHFEEADFRRVGFKLVA
HIFNAEHDTHCFVLQNRPKAVRVFY*
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mRNA from alignment at H-elongata_contig17388:1075..3260-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig17388.4514.1 ID=mRNA_H-elongata_contig17388.4514.1|Name=mRNA_H-elongata_contig17388.4514.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=2186bp|location=Sequence derived from alignment at H-elongata_contig17388:1075..3260- (Himanthalia elongata Himel1 dioecious)
GACCACCTTGGCTCGGGATCACTGTTATGCGCCTACACTCTTCAGCTGCT
CCTTCTCTACCTGCCGGCCTCGCTCAAGGAGTCGGTCCTTTTTCGGGACA
TTGCGGTGAGCAGTCCTTTGGATCGCGGCAGGCAATTTGAATAGCAGTGG
TTTCTTTTGTGTGGTCTCTTGTGTGTGTTTGTCTGTGTCTGTGTGTGTGT
GTGTGTGTGTGTGTGTGTGTGTGTGTGCGTGTGTGGTCATCATATACACA
AGAGTCGCACCTAAGCGCGTAATAATGTTAATGCGGGGTCATCTAGGCCG
GGTCGTTTATGGTTCTCGTCAGCGTTGCTTCGTGTACTGCATTGATAACA
TCGATGGCATCGATATTCTAGCAGCCACCGTTTACGCCGCCTGTACTGTG
TAATACTTGTTCCTTGGAGAAATAAATAGAGAGAGATATATTACGTCTTG
TAGTACTTTCCAGTATCATATTTTTTTCCCACGTCGCCGTCACCGCCCCC
CCCCCGCCCCCCCGCCTTCCCACCCCTGATTCGCGTTCGACGGTCACTTG
CATCGTACCTATGCTTTCTCGCCACAATGGTAAAAGCCTTATGGGAAAAT
ATATAATTAGTAATTGTACAAAATTATTAGAGGCTAAAGTAATGGAATAT
TGCTAATGGAAGCATGGTAATGCGGCAGTAGAGATGCGCGATGATGGTAA
CGGAGCGATAGCAGCTCGAACAGGTGTGTCGATGATCTCGGCGTATTCCT
TTTGAACGTGCATTTTTTTTATCTTCGCTCGCCCCGTCGCATCTTCATAT
TTTTGTTCCTGTTTAATAATTACTAATGTGTGTGTGTATGTGTGTGTGTG
TGTGTGTTTTCAAACGTTCCGCAAATGTGAACCCTTCCGGCGGCTCGTTT
CCCTGGGGGGCTATCCGGTGAAACGCCGCGAATCTCTTACAACTCCCTAC
TCAAAGTTACGGTTTGTGTACTTCGAGGCGCAGCTCTCTTTTGCCAAGAC
TCACGGGCAGATAGGGGCACAAGATGCCGATAGCAAAGGTAACAGCACTG
GTCTTGGGGCAGGAAACGAGGGCTCCGCCCACCCCCCCGGGGGTTCCACG
AAAAGGTCTCCGGGCTACGTCTCGAAGGGCGACGGCGAGAGTGCCAAGGA
AGAGGAAAGGCCGCTGTTTTGTGTCGAGACTGCGGCACGGTGAGGGAAGA
GGGTATGATCCGCCCGCAAGATACGACATCGTTACCAAATTATATGCTGT
AGTCAGAGTCGCGTGTACTGCCTACGTAAACCAGACAGCCCTAGGGCCGA
AAAGCGAAACCAGGTACCGGTATAATACATTATTTTAATCTAAAAATGAG
GCGTTACCCAAGGGGGGGGGAGGAAAAGGGGGATTGATTCGTAGTGCGCT
CGACACGCCCCCTCCGCACGTTACATGCATCACATCTCGCGTTGGTCGGG
GTCTATATACTATATTATACTACATTATAGTATACTATACCGGTGGTATA
TGTAAATATATCGTAAATGCCGTTGTATGAGTGTTGCTTGTTTAGTCGTG
GGTAATGGATCTCTGGCTCTGCTTGCCGTACTAATTTTTTCCGTGTGTTT
GGCGGCTATCGTAGATCGTTTATAGATCGTTTACAACCCGTCTTCGGAAA
GAGGGGGCGGGGTGAGGGGGGGAAGTGATGAAATTGTTACTATCAATAGA
AAAAAACTTTACTCATGTTCGTTTTTGTTTTGTTTTGTTTTTCTTCCTTG
ATTTTGTCCCTAGTATAACATCACAACCAAGAGCGCGCCGAGGGGTGTGG
CGTCTCTGCCTGATCATATTAATACACCAATAAATATAGAGCTATTCTAT
CACACACCACACACACGAGTATTCGTGGATGATGATAAAAGCCCGCCCCC
ACTTCCCACCCCTTCAATTAAAAATAGATAAACAACTACTAAAAATCCCA
CCGCTACGACGAGTATATAACAGCACACGCTTGAACCGCTCGGTAGGCTG
CTGGAAATAGCGTGGGAAACTTACAACGACCCCGAAGGCTTCGAGAATCC
GAACAATTACCACTTCGAGGAGGCCGACTTCAGGAGGGTGGGGTTCAAGC
TCGTGGCGCATATCTTCAACGCCGAGCACGACACGCACTGCTTCGTGTTG
CAGAACAGGCCGAAAGCGGTACGTGTATTTTATTAG
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Coding sequence (CDS) from alignment at H-elongata_contig17388:1075..3260-

>mRNA_H-elongata_contig17388.4514.1 ID=mRNA_H-elongata_contig17388.4514.1|Name=mRNA_H-elongata_contig17388.4514.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=1056bp|location=Sequence derived from alignment at H-elongata_contig17388:1075..3260- (Himanthalia elongata Himel1 dioecious)
GACCACCTTGGCTCGGGATCACTGTTATGCGCCTACACTCTTCAGCTGCT
CCTTCTCTACCTGCCGGCCTCGCTCAAGGAGTCGGTCCTTTTTCGGGACA
TTGCGGACCACCTTGGCTCGGGATCACTGTTATGCGCCTACACTCTTCAG
CTGCTCCTTCTCTACCTGCCGGCCTCGCTCAAGGAGTCGGTCCTTTTTCG
GGACATTGCGTTACGGTTTGTGTACTTCGAGGCGCAGCTCTCTTTTGCCA
AGACTCACGGGCAGATAGGGGCACAAGATGCCGATAGCAAAGGTAACAGC
ACTGGTCTTGGGGCAGGAAACGAGGGCTCCGCCCACCCCCCCGGGGGTTC
CACGAAAAGGTCTCCGGGCTACGTCTCGAAGGGCGACGGCGAGAGTGCCA
AGGAAGAGGAAAGGCCGCTGTTTTGTGTCGAGACTGCGGCACGTTACGGT
TTGTGTACTTCGAGGCGCAGCTCTCTTTTGCCAAGACTCACGGGCAGATA
GGGGCACAAGATGCCGATAGCAAAGGTAACAGCACTGGTCTTGGGGCAGG
AAACGAGGGCTCCGCCCACCCCCCCGGGGGTTCCACGAAAAGGTCTCCGG
GCTACGTCTCGAAGGGCGACGGCGAGAGTGCCAAGGAAGAGGAAAGGCCG
CTGTTTTGTGTCGAGACTGCGGCACGGCTGCTGGAAATAGCGTGGGAAAC
TTACAACGACCCCGAAGGCTTCGAGAATCCGAACAATTACCACTTCGAGG
AGGCCGACTTCAGGAGGGTGGGGTTCAAGCTCGTGGCGCATATCTTCAAC
GCCGAGCACGACACGCACTGCTTCGTGTTGCAGAACAGGCCGAAAGCGGT
ACGTGTATTTTATTAGGCTGCTGGAAATAGCGTGGGAAACTTACAACGAC
CCCGAAGGCTTCGAGAATCCGAACAATTACCACTTCGAGGAGGCCGACTT
CAGGAGGGTGGGGTTCAAGCTCGTGGCGCATATCTTCAACGCCGAGCACG
ACACGCACTGCTTCGTGTTGCAGAACAGGCCGAAAGCGGTACGTGTATTT
TATTAG
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