mRNA_H-elongata_contig17140.4401.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig17140.4401.1
Unique NamemRNA_H-elongata_contig17140.4401.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
[Close]
BLAST of mRNA_H-elongata_contig17140.4401.1 vs. uniprot
Match: D8LM43_ECTSI (Ankyrin repeat Transient receptor potential channel n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LM43_ECTSI)

HSP 1 Score: 393 bits (1009), Expect = 1.660e-122
Identity = 216/374 (57.75%), Postives = 264/374 (70.59%), Query Frame = 1 
Query:    1 FLAQIHSSLGPLMHSMFRMLEDLSRFGALMLVFILGFGLAFYALFGSPSAMLPEGGDISNYDTYFSSLLTLFGSMLGTFDFTVFSGTPMAEAGVFLLVVFLCLMNVTLLNLLIAILATTHAKVEGNSDKEAVLSEALIIRQYRRAMRSDSLPPPLNLPQELLCHLCWRNKERVKELFARGIFWLITGPVAIAATAVLWAASLPLTLAWAARVLRAGGLSMTVPVILGISFNLGVAPLLTAWLWLLGMVDIWRVGDGVMETSDLNEIKVSRAQRRKIYAGSPTSSVANIAFAAITAKSSQGSASHTSDGMQXGEGGGGIKDSSKLWQEAAVLRGIGTADGATGARQQGFNVAVALRFSHGLTVQQLREALHDRSK 1122
            FL Q+HSSLGPLMHS F ++ DL+RFGALMLV  LGF LAFYA+FGS SA LP+GGDI+ YDTY+SS+LTLF SMLG F F VF G PMAEAG  L+V FLC+MN+TLLNLLIAILAT HA++EGN+DKEAVLSEA+II QYRRAMR DSLP PLN+PQEL+  + WR+KER KE+FAR +FWL++GP+AIAAT          TLAWA RVLR+ G  M VP +LG+SFN+GVAP+ T WLWL G+  IW+ G G METSD NEI+ SRA RR  Y G P S +A +               +  +G Q      G   + KLWQ AA +     A GA   +  GFNV  A+R  HG+++QQL+E + D+ +
Sbjct:  786 FLTQVHSSLGPLMHSAFNVIGDLTRFGALMLVITLGFALAFYAMFGSMSASLPDGGDIAEYDTYYSSILTLFSSMLGNFSFEVFKGAPMAEAGEVLMVFFLCVMNITLLNLLIAILATAHARLEGNADKEAVLSEAVIITQYRRAMRLDSLPSPLNVPQELISCVLWRHKERAKEVFARAVFWLVSGPIAIAATXXXXXXXXXXTLAWAGRVLRSNGSLMLVPALLGVSFNVGVAPVATTWLWLRGVAGIWKQGHGTMETSDRNEIEASRAHRRGSYVGPPASPLAGVXXXXXXXXXXXXXGGN--EGRQRKPSSHGTP-AFKLWQRAADIG----AGGAGAVQHLGFNVVAAIRALHGMSMQQLKEQVDDQRR 1152
[Close]
BLAST of mRNA_H-elongata_contig17140.4401.1 vs. uniprot
Match: A0A6H5KCQ6_9PHAE (Ion_trans domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KCQ6_9PHAE)

HSP 1 Score: 382 bits (980), Expect = 3.780e-122
Identity = 210/372 (56.45%), Postives = 261/372 (70.16%), Query Frame = 1 
Query:    7 AQIHSSLGPLMHSMFRMLEDLSRFGALMLVFILGFGLAFYALFGSPSAMLPEGGDISNYDTYFSSLLTLFGSMLGTFDFTVFSGTPMAEAGVFLLVVFLCLMNVTLLNLLIAILATTHAKVEGNSDKEAVLSEALIIRQYRRAMRSDSLPPPLNLPQELLCHLCWRNKERVKELFARGIFWLITGPVAIAATAVLWAASLPLTLAWAARVLRAGGLSMTVPVILGISFNLGVAPLLTAWLWLLGMVDIWRVGDGVMETSDLNEIKVSRAQRRKIYAGSPTSSVANIAFAAITAKSSQGSASHTSDGMQXGEGGGGIKDSSKLWQEAAVLRGIGTADGATGARQQGFNVAVALRFSHGLTVQQLREALHDRSK 1122
            A++HSSLGPLMHS F ++ DL+RFGALMLV  LGF LAFYA+FGS SA LP+GGDI+ YDTY+SS+LTLF SM G F F VF G PMAEAG  L+V FLC+MN+TLLNLLIAILAT HA++EGN+DKEAVLSEA+II QYRRAMR DSLP PLN+PQEL+  + WR+KER KE+FAR +FWL++GP+AIAAT            AWA R+LR+ G  M VP +LG+SFN+GVAP+ T WLWL G+  IW+ G G ME SD NEI+ SRA RR  Y G P S +A +A           +  +  +G Q      G   + KLWQ AA + G     GA   +  GFNV  A+R  HG+++QQL+E + D+ +
Sbjct:  466 ARVHSSLGPLMHSAFNVIGDLTRFGALMLVITLGFALAFYAMFGSMSASLPDGGDIAEYDTYYSSILTLFSSMFGNFSFEVFKGAPMAEAGEVLMVFFLCVMNITLLNLLIAILATAHARLEGNADKEAVLSEAVIITQYRRAMRLDSLPSPLNVPQELISCVLWRHKERAKEVFARAVFWLVSGPIAIAATGXXXXXXXXXXXAWAGRMLRSNGSPMLVPALLGVSFNVGVAPVATTWLWLRGVAGIWQQGHGTMEMSDRNEIEASRAHRRGSYVGPPASPLAGVAXXXXXXXXXXXTGGN--EGRQRKPFSLGTP-AFKLWQRAADIGG----GGAGAVQHLGFNVVAAIRALHGMSMQQLKEQVDDQRR 830
[Close]
BLAST of mRNA_H-elongata_contig17140.4401.1 vs. uniprot
Match: D7FLB1_ECTSI (Ankyrin Repeat Transient Receptor Potential Channel n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FLB1_ECTSI)

HSP 1 Score: 118 bits (296), Expect = 3.070e-25
Identity = 82/210 (39.05%), Postives = 117/210 (55.71%), Query Frame = 1 
Query:    1 FLAQIHSSLGPLMHSMFRMLEDLSRFGALMLVFILGFGLAFYALFGSPSAMLPEGGDISNYDTYFSSLLTLFGSMLGTFDFT-VFSGTPMAEAGVFLLVVFLCLMNVTLLNLLIAILATTHAKVEGNSDKEAVLSEALIIRQYRRAMRSDSLPPPLNLPQELLC-HLCWRNKE-------RVKELFARGIFWLITGPVAIAATAVLWAAS 603
            F AQ+    GP++  +F M  +L +FG +++V +LGF ++F+ALFG             + DT+  + LTLF +MLG  DF   F G         L V++L ++ V LLNLLIA+L+T+H+KVEG +D+E  +S+A II  YR  +    LPPP NL Q +L   +  R++        R +E   R  FWL  GPVA A   VLW  S
Sbjct:  915 FFAQMLRFHGPMIQVVFSMTAELVKFGVVIIVVMLGFAMSFHALFG-------------DVDTFGGTCLTLFKAMLGEVDFFGSFPGNQYDSVATALFVIYLVVIAVMLLNLLIAVLSTSHSKVEGKADQEFKVSKARIIEHYRMVVDMCLLPPPFNLVQLILSLPVMVRDRSGQGTASTRAQEAVGRMAFWLALGPVAAACGTVLWVLS 1111
[Close]
BLAST of mRNA_H-elongata_contig17140.4401.1 vs. uniprot
Match: A0A6H5KJG3_9PHAE (Ion_trans domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5KJG3_9PHAE)

HSP 1 Score: 112 bits (280), Expect = 3.560e-23
Identity = 84/245 (34.29%), Postives = 125/245 (51.02%), Query Frame = 1 
Query:    1 FLAQIHSSLGPLMHS-----------MFRMLEDLSRFGALMLVFILGFGLAFYALFGSPSAMLPEGGDISNYDTYFSSLLTLFGSMLGTFDF-TVFSGTPMAEAGVFLLVVFLCLMNVTLLNLLIAILATTHAKVEGNSDKEAVLSEALIIRQYRRAMRSDSLPPPLNLPQELLCHLCW-----------------RNKERVKELFARG-------IFWLITGPVAIAATAVLWAAS-LPLTLAW 624
            F  QIH   GP++ +           +FRM   L +FG +M V +LGF +AF+ LF              ++D++  S L LF +MLG  DF  VFSG        FLLVV+L ++ V LLNLL+AIL+T+HA+V  N ++E  +S A ++  Y+  + +D LP P NL Q ++  + W                 + + R KE +A G       +FW++ GPVA+   ++LW  S LP    W
Sbjct:  855 FFVQIHPLQGPMIQASGETKRFPQRVVFRMTRILLKFGFVMAVIVLGFTMAFHVLF-------------RDFDSFGESFLDLFKAMLGDTDFFKVFSGDTYDVVATFLLVVYLFIVTVMLLNLLVAILSTSHAQVAENIEREFKVSIARMMDHYQLVVTNDMLPTPFNLLQLIVWPIAWCLHGCCGRNSGVSGNTQQTRNRSKEAYACGSKAIGPVVFWVVLGPVAVIGGSLLWMGSVLPAMYFW 1086
[Close]
BLAST of mRNA_H-elongata_contig17140.4401.1 vs. uniprot
Match: A0A6H5JG42_9PHAE (Ion_trans domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JG42_9PHAE)

HSP 1 Score: 110 bits (274), Expect = 1.980e-22
Identity = 78/230 (33.91%), Postives = 119/230 (51.74%), Query Frame = 1 
Query:    1 FLAQIHSSLGPLMHSMFRMLEDLSRFGALMLVFILGFGLAFYALFGSPSAMLPEGGDISNYDTYFSSLLTLFGSMLG-TFDFTVFSGTPMAEAGVFLLVVFLCLMNVTLLNLLIAILATTHAKVEGNSDKEAVLSEALIIRQYRRAMRSDSLPPPLNLPQELLCHLCW-----------------RNKERVKELFARG-------IFWLITGPVAIAATAVLWAASLPLT 615
            F  QIH   GP++  +FRM   L +FG +M V ++GF +AF+ LF              ++D++  S L LF +M G T  F  FSG         LLVV+L ++ + LLNLL+AIL+T+H+KV+ N D+E   S A ++  Y+  + +D LP P NL Q ++  + W                 +   R +E + RG       +FW++ GPVA+    +LW  S PL+
Sbjct:  676 FFVQIHPLQGPMV--IFRMTTVLLKFGFVMAVVMIGFTMAFHVLF-------------RDFDSFGESFLELFKAMFGETTFFNAFSGDTYDAVATMLLVVYLSIVTILLLNLLVAILSTSHSKVQKNIDREFKASIARMMDHYQLVVTNDILPAPFNLLQLVVWPIAWCVGGCCGRSTSGSQSTRQELNRGREAYERGNKAIGPVVFWVVLGPVAVVGGTLLWIVSTPLS 890
[Close]
BLAST of mRNA_H-elongata_contig17140.4401.1 vs. uniprot
Match: A0A6H5JUV2_9PHAE (Ion_trans domain-containing protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JUV2_9PHAE)

HSP 1 Score: 104 bits (259), Expect = 9.660e-21
Identity = 86/250 (34.40%), Postives = 124/250 (49.60%), Query Frame = 1 
Query:    1 FLAQIHSSLGPLM---------------HSM-FRMLEDLSRFGALMLVFILGFGLAFYALFGSPSAMLPEGGDISNYDTYFSSLLTLFGSMLGTFDF-TVFSGTPMAEAGVFLLVVFLCLMNVTLLNLLIAILATTHAKVEGNSDKEAVLSEALIIRQYRRAMRSDSLPPPLNLPQELLCHLCW-----------------RNKERVKELFARG-------IFWLITGPVAIAATAVLWAAS-LPLTLAW 624
            F  QIH   GP++               HS+ FRM   L +FG +M V +LGF +AF+  F              ++D++  S L LF +MLG  DF  VFSG        FLLVV L ++ V LLNLL+AIL+T+HA+V  N D+E  +S A ++  Y+  + +D LP P NL Q ++  + W                 + + R KE +A G       +FW++ GPVA+   ++LW  S LP    W
Sbjct:  124 FFVQIHPLQGPIIQASGEFRQVAKRNVSHSVVFRMTRILLKFGFVMAVILLGFIMAFHVQF-------------RDFDSFGESFLDLFKAMLGDNDFFKVFSGDTYDFVATFLLVVGLFIVTVMLLNLLVAILSTSHAQVAENIDREFKVSIARMMDHYQLVVTNDMLPTPFNLLQLVVWPIAWCLHGCCGRNSGVSGNTQQTRNRSKEAYACGSKAIEPVVFWVVLGPVAVNGGSLLWMESVLPAMYFW 360
[Close]
BLAST of mRNA_H-elongata_contig17140.4401.1 vs. uniprot
Match: A0A6H5LDE6_9PHAE (Ion_trans domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5LDE6_9PHAE)

HSP 1 Score: 96.3 bits (238), Expect = 9.440e-18
Identity = 77/249 (30.92%), Postives = 112/249 (44.98%), Query Frame = 1 
Query:    1 FLAQIHSSLGPLMHSMFRMLEDLSRFGALMLVFILGFGLAFYALFGSPSAMLPEGGDISNYDTYFSSLLTLFGSMLGTFDFTV-FSGTPMAEAGVFLLVVFLCLMNVTLLNLLIAILATTHAKVEGNSDKEAVLSEALIIRQYRRAMRSDSLPPPLNLPQELLC------HLCWRNKER----------------------------------------VKELFARGIFWLITGPVAIAATAVLWAASL 606
            F AQI  S GP++  MF M   L++FG +ML+ +LGF  +FY+L+   +A             Y      +F + LG  D+   FSGT        LLVV+L L+ + +LNLL+A+L+T HAKV+ N+  E  ++ A +I+ Y   +  D LPPP NL Q +         LC+R   R                                         +  F R  FW + GP+A+ A  VLW  S+
Sbjct: 1233 FFAQILPSQGPMIQVMFSMTGLLAKFGMIMLLVMLGFVTSFYSLYKETTA-------------YGEVWKAIFRATLGETDYLDDFSGTTFDGVATVLLVVYLVLLTIMMLNLLVAVLSTAHAKVDANAGLEYKVTRARLIQHYVNVVEIDRLPPPFNLFQWIFALPFMVLDLCFRTSRRPSTASTNSAXXXXXXXXXXXXXXSINGNEKTKRDRSYFKVARGFFGRLAFWAMLGPIAVLAGWVLWMISI 1468
[Close]
BLAST of mRNA_H-elongata_contig17140.4401.1 vs. uniprot
Match: D8LH99_ECTSI (Ankyrin Repeat Transient Receptor Potential Channel n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LH99_ECTSI)

HSP 1 Score: 88.2 bits (217), Expect = 4.350e-15
Identity = 66/175 (37.71%), Postives = 94/175 (53.71%), Query Frame = 1 
Query:    4 LAQIHSSLGPLMHSMFRMLEDLSRFGALMLVFILGFGLAFYALF------GSPSAMLPEGGDISNYD---TYFSSLLTLFGSMLGTFDFTVF--SGTPMA--------EAGVFLLVVFLCLMNVTLLNLLIAILATTHAKVEGNSDKEAVLSEALIIRQYRRAMRSDSLPPPLNL 471
            L+QI ++LGP+   ++RM+    RF A + + +L F LAF+A+F        P   L +       D   T+  S +T+F   LG  DF  F  +G+            AG+FLLVV++  M V LLNLLIA+L+TTH KV  N++KE   + A +I Q  R +     PPPLNL
Sbjct: 1168 LSQIDATLGPMTQVIWRMMSHTLRFSAFIAMVMLSFALAFHAVFHTCGEYSEPQCTLDDDDAFPLRDAFGTFGDSFVTVFTYALGGPDFEAFQLAGSDCRCDLPEGARNAGIFLLVVYMITMTVVLLNLLIAVLSTTHGKVYANAEKEFHHARARLIYQSARVVSRSRPPPPLNL 1342
[Close]
BLAST of mRNA_H-elongata_contig17140.4401.1 vs. uniprot
Match: D7FMG5_ECTSI (Transient receptor potential channel n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FMG5_ECTSI)

HSP 1 Score: 84.7 bits (208), Expect = 5.250e-14
Identity = 81/259 (31.27%), Postives = 125/259 (48.26%), Query Frame = 1 
Query:    1 FLAQIHSSLGPLMHSMFRMLEDLSRFGALMLVFILGFGLAFYALFGSPSAMLPEGGDISNYDTYFSSLLTLFGSMLGTFDFTVFS----GTPMAEAGVFLLVVFLCLMNVTLLNLLIAILATTHAKVEGNSDKEAVLSEALIIRQYRRAMRSDSLPPPLNLPQELLCHLCWRNKE---------RVKELFARGIFWLITGPVAIAATAVLWAASLPLTLAWAARVLRAGGLSMTVPVILG---ISFNLGVAPLLTAWLW 729
            F  Q     G ++  M  +  ++ +F  ++   ++GF ++FYALF    +     GD+          L +F +MLG  + +VFS     +   +    LLVV+L ++ V LLNLLIA+L+T HAKV+   D     S+  I++ Y R + SD LP P NLPQ +   L  R  +         ++   F+ G+FWL  G  AI     LWAAS P+ +  A R     G S+TV V      +  ++   P + +W W
Sbjct:  600 FFGQFLKRQGLVIQMMTILFGEMLQFALVLGTIMMGFTVSFYALFEEAKSY----GDV---------WLDVFKAMLG--EVSVFSEIYEDSVYRDVARVLLVVYLTVVAVMLLNLLIAVLSTEHAKVDEQQDIAFRESKVRIMKLYVRIVDSDVLPSPFNLPQ-IAVGLVARGVDGLLGTKTCPKIMREFSVGVFWLTLGSPAILIAWGLWAASAPMAVLTAWRRATYTGRSLTVAVACSSVVVVLHVFALPFVLSWFW 842
[Close]
BLAST of mRNA_H-elongata_contig17140.4401.1 vs. uniprot
Match: A0A835SSP9_CHLIN (Ion_trans domain-containing protein n=1 Tax=Chlamydomonas incerta TaxID=51695 RepID=A0A835SSP9_CHLIN)

HSP 1 Score: 74.7 bits (182), Expect = 1.110e-10
Identity = 51/157 (32.48%), Postives = 88/157 (56.05%), Query Frame = 1 
Query:   13 IHSSLGPLMHSMFRMLEDLSRFGALMLVFILGFGLAFYALFGSPSAMLPEGGDISNYDTYFSSLLTLFGSMLGTFDFTVFSGTPMAEA--GVFLLVVFLCLMNVTLLNLLIAILATTHAKVEGNSDKEAVLSEALIIRQYRRAMRSDSLPPPLNLPQ 477
            ++ +LGPL++++ RM+E++  F   ML+ + GF     A+F      +P+     +Y  + +S+LTLF SMLG FD T+F G P A+   G+ + V+FL +  + LLNLL+AI+   +   E  +  E    +A I+  Y+  +  + +  P +L Q
Sbjct: 1120 VYPTLGPLLNTVARMMEEVVAFLFPMLIILTGFSTMMSAVF---QESVPD-----SYGNFAASMLTLFSSMLGNFDLTIFDGLPTAQRLYGIIMSVIFLVISAILLLNLLVAIITNRYRPEEVEA--ETKFKKAQIVNYYQTQVSRNLICSPFSLLQ 1266
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig17140.4401.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LM43_ECTSI1.660e-12257.75Ankyrin repeat Transient receptor potential channe... [more]
A0A6H5KCQ6_9PHAE3.780e-12256.45Ion_trans domain-containing protein n=1 Tax=Ectoca... [more]
D7FLB1_ECTSI3.070e-2539.05Ankyrin Repeat Transient Receptor Potential Channe... [more]
A0A6H5KJG3_9PHAE3.560e-2334.29Ion_trans domain-containing protein n=2 Tax=Ectoca... [more]
A0A6H5JG42_9PHAE1.980e-2233.91Ion_trans domain-containing protein n=1 Tax=Ectoca... [more]
A0A6H5JUV2_9PHAE9.660e-2134.40Ion_trans domain-containing protein n=2 Tax=Ectoca... [more]
A0A6H5LDE6_9PHAE9.440e-1830.92Ion_trans domain-containing protein n=1 Tax=Ectoca... [more]
D8LH99_ECTSI4.350e-1537.71Ankyrin Repeat Transient Receptor Potential Channe... [more]
D7FMG5_ECTSI5.250e-1431.27Transient receptor potential channel n=1 Tax=Ectoc... [more]
A0A835SSP9_CHLIN1.110e-1032.48Ion_trans domain-containing protein n=1 Tax=Chlamy... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig17140contigH-elongata_contig17140:1596..7306 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score396.4
Seed ortholog evalue1.6e-107
Seed eggNOG ortholog2880.D8LM43
EggNOG free text desc.calcium ion transmembrane transport
EggNOG OGsKOG3676@1,KOG3676@2759
COG Functional cat.U
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Hectar predicted targeting categorysignal anchor
Exons5
Model size1152
Cds size1152
Stop1
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig17140.4401.1prot_H-elongata_contig17140.4401.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig17140 1596..7306 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929998.329405-CDS-H-elongata_contig17140:1595..18411622929998.329405-CDS-H-elongata_contig17140:1595..1841Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig17140 1596..1841 -
1691679240.179729-CDS-H-elongata_contig17140:1595..18411691679240.179729-CDS-H-elongata_contig17140:1595..1841Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig17140 1596..1841 -
1622929998.347609-CDS-H-elongata_contig17140:1880..20091622929998.347609-CDS-H-elongata_contig17140:1880..2009Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig17140 1881..2009 -
1691679240.1891708-CDS-H-elongata_contig17140:1880..20091691679240.1891708-CDS-H-elongata_contig17140:1880..2009Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig17140 1881..2009 -
1622929998.3643482-CDS-H-elongata_contig17140:2185..25341622929998.3643482-CDS-H-elongata_contig17140:2185..2534Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig17140 2186..2534 -
1691679240.1963768-CDS-H-elongata_contig17140:2185..25341691679240.1963768-CDS-H-elongata_contig17140:2185..2534Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig17140 2186..2534 -
1622929998.3803434-CDS-H-elongata_contig17140:6671..68531622929998.3803434-CDS-H-elongata_contig17140:6671..6853Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig17140 6672..6853 -
1691679240.2051573-CDS-H-elongata_contig17140:6671..68531691679240.2051573-CDS-H-elongata_contig17140:6671..6853Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig17140 6672..6853 -
1622929998.4031837-CDS-H-elongata_contig17140:7060..73061622929998.4031837-CDS-H-elongata_contig17140:7060..7306Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig17140 7061..7306 -
1691679240.2156615-CDS-H-elongata_contig17140:7060..73061691679240.2156615-CDS-H-elongata_contig17140:7060..7306Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig17140 7061..7306 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig17140.4401.1

>prot_H-elongata_contig17140.4401.1 ID=prot_H-elongata_contig17140.4401.1|Name=mRNA_H-elongata_contig17140.4401.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=384bp
FLAQIHSSLGPLMHSMFRMLEDLSRFGALMLVFILGFGLAFYALFGSPSA
MLPEGGDISNYDTYFSSLLTLFGSMLGTFDFTVFSGTPMAEAGVFLLVVF
LCLMNVTLLNLLIAILATTHAKVEGNSDKEAVLSEALIIRQYRRAMRSDS
LPPPLNLPQELLCHLCWRNKERVKELFARGIFWLITGPVAIAATAVLWAA
SLPLTLAWAARVLRAGGLSMTVPVILGISFNLGVAPLLTAWLWLLGMVDI
WRVGDGVMETSDLNEIKVSRAQRRKIYAGSPTSSVANIAFAAITAKSSQG
SASHTSDGMQGGEGGGGIKDSSKLWQEAAVLRGIGTADGATGARQQGFNV
AVALRFSHGLTVQQLREALHDRSKVTDQVREHV*
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mRNA from alignment at H-elongata_contig17140:1596..7306-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig17140.4401.1 ID=mRNA_H-elongata_contig17140.4401.1|Name=mRNA_H-elongata_contig17140.4401.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=5711bp|location=Sequence derived from alignment at H-elongata_contig17140:1596..7306- (Himanthalia elongata Himel1 dioecious)
TTCCTCGCGCAGATCCACTCGTCGTTGGGACCGTTGATGCACTCAATGTT
CCGTATGTTAGAAGATCTTTCCCGGTTTGGTGCACTTATGCTCGTGTTCA
TCTTGGGTTTCGGGCTAGCGTTTTACGCTCTGTTTGGATCCCCGTCGGCA
ATGCTGCCGGAAGGGGGAGATATTTCCAACTACGATACATACTTCTCGTC
GTTGCTGACGTTATTTGGCTCAATGCTTGGAACTTTCGACTTCACGGTAA
GCCAGGATAGAAGAGGGGGGATCGAAACCTTACCCGCGCAGTTACTATAG
AGTAGGCGGGCGTGCAGAAGATAACCTTGACACTGTCCATCGATATTCTT
AGCACCTTCGTAATACGTTTATAGCAATTTCACTGCGTTCGTGACTTGCT
TCGACTCTCTTGTCTCCCTACTTCTACCGTCCCGTGGACCTTGGGTTTAA
CAGGTTTTCAGTGGGACTCCGATGGCCGAAGCGGGAGTCTTCCTACTCGT
GGTTTTTCTATGCTTGATGAACGTTACCCTTCTGAACCTTCTCATTGCCA
TCCTGGCTACCACACACGCAAAGGTGGAGGGGAACAGCGACAAAGAGGCT
GTCTTGTCCGAGGCCCTTATCATCAGACAGTACAGGTAATTATATTTACA
AAGTATAGGGCTCGAATGTGCGGAACATCGTCTGAGTCTGAGTACGAGGC
AGGCATCACGCTCGGAGGTCACACCGAGTAAGGAAAAGAGTCGCCAATGG
AGATGTTGAGGTGTGGTGGGAGTGCTGCACCTAGCACGTCGGAAAAACCA
AGACAAGAACCTGGGTAGACACCTGGAACTGAGCGAAAGGCGAAGGGCAC
TCGCTCGGAAAAAACGACGGGCGAAATGGGCGGTGACGAAGGTCGCCCGC
ATGAAACACAGGAGGACCGCCAGGGCGAGGTCTCGGCTGGACGAGCTTAC
CTTCGGCATATTCAACGTTCGCACAGCATATGTCAACGGTGTCAACGGCA
TTGGTCATATCGACTCCGTCCTGAGACCCTGTACTGCGAGGGGGTGTGAT
GTTATTGAACTGCACGAGACAAAACGGGACGGAGCATCTGGAATAACTGC
ATCTGAATACCGGTTCTACTTCATTAATGACTATCGCGTAGTTAAAGAAA
AAAAGGGGCAACATGGTGTGGGACTAGGGATAAAAGAGGAGACCATTAAC
AAGGCCGGCAGGGCCGACATCGTAATCGAATCGAGTGTATCAGCGAACGT
CTCCTCAAGGCTCGAATATCGATTAAATCATATTTCGTTACGTTTGTGGA
AGCCTACGCTCCGACCGAGGAAGCAACGGAGGGCAGAAGGCCAAGTACAT
CGCAGCTCTAAACAGCACCGTATCATCAGTATCCGCTCGGGAATACGTCT
TCATTTTGACCGACGCGAATGCCAGGAGAGGAAAAATGAGTGAGGGGGGC
GGGGAAGCAGAAAGCAAGGTATTGGGTGCATATGGTCGAGACGTGCTCAA
CGAAAACGGCAAATTATTGCTGAGTTTCACAGAAGACAACAAGCTCGCCC
TTCTGAACACCTTTTTTTGCACCCCCCAAAATGGCGTATCCTACACATTC
CAAAGCATCAACCACGGCAATGGGAAAGTGCGTTTGGACTATATCCTGAC
AAAGCAGACGGACCGCAGATTGGTTCGCAGCGTTAATGTCCGCCCACCCC
CTTTAGAGGCACCAGAATCGGATTACAATCTCGTGTACGTGAAAGTCCGC
ATCCCACGAAGGTCTGCACCAAACCGGAAGAAGAGGGAGAGCACCAAGGA
AACTCCAAAGACGGCCGACCTCCAGCGGTTGATGACTCACCCGAACCTTA
GACACCAGATTGCGAACGCGATGAATGCTGCATTATCACCCATCCCCGAT
GGCACCTGCATCGGTGACATCGCCGACAACATGGCTGACATCGTACTTTC
AACTGCGGCTGAGCTGGCACCACGCTCTAAGCACCGCGCGGAGACAGGGT
TGGTGTGCGGGTCCTGGTGTGGAAACTGAGATGAGCGCAGAATGTCAACA
GAGGGAGGAGGCGAGGAGGCGCCTACGTGCAGAACCCCACAATTTGAACG
TTCGAAAGGCCGTGAAGATGACTGGCAAGAATCTTCGGAACGTTCGCGAG
GCTGACGTGCTGAGCTTCTTCTGGACCTTTGTCCGCAAACTCAAAGCACG
TATTCGAGAAGGCGATCAGACCGGCTTCTACAGGCACCTGAAGACGATGA
ACTTGGAAGGGAAGCAAGACCGCAGCTCGGCGCACATCAAAGACGAGGAC
GGTATACTCCTGAGGGACGTTGTACTTATCCGCCAATGATGGGCCTGGTG
GTTCCACACTCTCTTGAACACGAAGTCGCCGGAGCTCGAACCGAACATCA
CTAAAGACCTCGACCAGTGGCCGGAGAACACGCCACTATGAGTTCAGCCC
ACGAGGCAGGAGCTGACAAACGCCATCCGCTCGTTAGCGAGCGAAAAGGC
TGTTGGACTGCACGGAGTTTCCATTGAGCTGTTCAAGGTCGCCCTCACCG
GTGATCCCACCCTGCGACGGAGACTGCTCGTCGTCGTTTTTTGTATTTGG
AGGGGGGGGAAGGTGCCGCAGCAGTGGAAATGTGCCATTATCAAGGTACT
CCACAAGAAGAAGGATCGGACAGAGTGCGGCAACTACAGAAGTATATCAC
TGGTAGCTCACGCCGGCAAGATACTACTGAAGGTCGTCGCTCGCCTCCTG
AGTGAGTATTGTGAGCGCGTTGGTATCCTGCCGAAGGCACAGAGCGGTTT
CCAGCGGAACCGTTTTACCACCGATATGATGTTCGTGATTCGTTGACTGC
AGGAGTTGGAGCGGAAAAAACGGATTCCGTTGTATGTATGCTTTATCAAC
CTTAAAAAAGCGTACGACTCTGTTGACCGAACCCTCCTCTAGACAGTACT
CGCCACAAACGATTATCTCAGTCCTTCGTCAATTCCATGATGGCATGCAA
ATATGGGTGCGGCTCGATGACGGGGTTTGCTTTTTCGGAGTGGTACCCTG
TGGAATAGGGCCTTTGTCAAGGGTGCGTTCTTGCACCCCTCCTTTTCAAT
GTATTCTTCGCGGTGGTTATAAACGTGACCTACACGCGTTTCAAGGCAGA
TAGCGACATCATGGACGCCCTGGTGCACCTCAGGAAGGAAACGAGGGGGC
GAGGGCGGGGGATAGCAACCACCGGAGGGCCAGTAGCCCTGACGACGTCG
CTGTGGGACATGCTATACGCTGACGATACCGGAGTGGTCTCGCAATCGCC
CGAACAGCTCAGGAAGATGGTGGACGTGATTGTGGCCGTATGCGTAGCGT
TTGGTCTCACCGTATCGGAGGACAAAACTGAGATCATATGCTTACGCACG
AAGGGGATGCCGGAGGAAACAGCCACATTCAGCGTAGAAGCAGCGGGTCA
GGTATGCAACCAAACGAACGAGTTTGTATACCTCGGGGGGAACGTCAACC
ACACTGCTGACCNNNNNNNNNNATGCTGACCTGTCCATCGAGGTCAACCG
ACGCATACGCACGCATGGTGCAGCTTTCGAAAGTACACCCCCGAACTGTA
TGACCGACCCAGCGCCCCCCTGGAGTTCAAAATCCGGATGTTGAAAGCCG
AGATACTTGAGAAAATGATTTACGGCTGCGTCACGTGGAGCCCACGCGCG
TGCCACGTCGACATGCTGTGCCGAGTCCACCACAGCTTCTTGGCTCGCTG
CATTGGTTGGCGAAAGAGCAATCGCACCGATCACCCGATTTCCTACCTGG
ATACCCTAATGAAGACGGGAAGCGAGAGCATCGAGGCGATGATGCGCAGG
AGGGGAATCCTGTTCGCGGGATTCGTGACGCGCATGGACGACACGAGACT
GCCGAAGTGCGTGATGTTCGGAGAAATCGTGGGGGGCGCGGGTCGCGTGG
GGGGACAGGAAAAATAGTAGATGGCGTTTCTTCTGGAAGATCTCAAAGCT
TTCGGTATCAACGCCGTCCAGTGGACGATTGCAGCCCAGGACGAAGGGGG
CTGGCGCAAGATGGCGAAACAAGGGGCGGAACATTTCATGAAGAAGTTGA
TCGCTACAGAGAAAGTCAGGACTGAACTACGGCATGCACTAGCATGTCCG
AACGTGACGGGGAGGATCAAGGATAGGATAGCCCAATACAAACGTGCTCA
TGCTGGTTTTCTCACCATAGTTGATTAGCCACGAGTGACGCGAACTTACC
CCCCAGGCGTTTTGTTGCTTGCCGATGTCATATTGCCTTTCTCAGGCGTT
ACGTTTTTTCTTTGTCTTGTTTTTCTTTCGCTTTCGCCTCTTTTTTTACT
TTCATCAACCCGTGGCTTTTCGTTCAATCATTCTTCGATAGGACCACGTC
CCGACAGCCACACGCAGTTCGTTAACAACTGTGTGTGCCCTCTTTTTTGT
GGTTTTTCTTTTTCTTTGGAGGTGTCGCTTTTTCAGAGTATTTGTATTAT
ACACCATTTGCCATTTCATTTTGTATTGAAGATTTCGTCGAACGTTTTTC
CTTCCGGGTGGTGTTTTTTCTACCTTCTGACCACGGGCTGGATTTTGACA
TCAGCTTATGTAAGAATTCAATCAAAAACAAATCGTCTCTTGCAGTCGAG
AAAACAGACGGTAGTTCGTCGATGACTTTCCGCCCTCCTGCCCAAATTTT
CCATCGCCTGAAATCTCCATTTTTCAAATGAAAAAATATGATTTTACCTG
CTTCCCCTTTCCTAAACCGTAGGCGGGCGATGCGCAGCGACTCCCTCCCA
CCCCCTCTGAATCTTCCCCAAGAGCTCCTATGTCACCTCTGCTGGAGGAA
CAAGGAGCGTGTGAAGGAACTTTTCGCCCGAGGTATCTTCTGGCTTATCA
CTGGACCCGTGGCCATAGCAGCAACAGCCGTACTATGGGCGGCGTCCCTT
CCACTGACGCTGGCATGGGCAGCACGCGTGTTGCGAGCGGGCGGACTGTC
CATGACCGTGCCGGTCATTCTCGGCATCAGTTTCAACCTGGGAGTAGCCC
CTCTTTTGACCGCTTGGCTGTGGCTGCTTGGAATGGTTGATATATGGCGC
GTTGGGGACGGAGTCATGGAGGTGAGAAAATCTTCGCCAGAAGTTGACGA
GTATGTACGGTATAGTCATTAGGATATATATGTATATATATATACATATG
CTAACTCTGATTCTACGTTTTATATCCGTTTTGCTTGCCAACTATGCATC
TTTCATTTCTTCGAATGACCAAAACCGCACACATGCGAAAAATATAGACG
AGCGACCTCAACGAGATTAAAGTGTCAAGGGCACAGAGGAGGAAAATCTA
CGCTGGTAGCCCGACCTCGTCCGTCGCCAACATTGCCTTCGCAGCTATCA
CAGCGAAATCGTCACAGGGTTCTGCAGTCGTCACTGCCACGGAGAGCGAC
ATAAAGACCAATCAGTCCCATACGTCCGACGGCATGCAAGGTGGTGAAGG
GGGTGGAGGTATAAAGGACTCGTCAAAACTTTGGCAGGAAGCCGCCGTGC
TCCGTGGAATTGGCACTGCCGATGGCGCCACCGGAGCTCGCCAGCAAGGG
TTTAATGTAGCTGTGGCATTACGTTTCTCGCATGGCTTGACTGTACAGCA
ACTTCGGGAGGCTCTTCATGACCGTTCGAAGGTCACGGATCAGGTCCGTG
AGCACGTGTGA
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Coding sequence (CDS) from alignment at H-elongata_contig17140:1596..7306-

>mRNA_H-elongata_contig17140.4401.1 ID=mRNA_H-elongata_contig17140.4401.1|Name=mRNA_H-elongata_contig17140.4401.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=2304bp|location=Sequence derived from alignment at H-elongata_contig17140:1596..7306- (Himanthalia elongata Himel1 dioecious)
TTCCTCGCGCAGATCCACTCGTCGTTGGGACCGTTGATGCACTCAATGTT
CCGTATGTTAGAAGATCTTTCCCGGTTTGGTGCACTTATGCTCGTGTTCA
TCTTGGGTTTCGGGCTAGCGTTTTACGCTCTGTTTGGATCCCCGTCGGCA
ATGCTGCCGGAAGGGGGAGATATTTCCAACTACGATACATACTTCTCGTC
GTTGCTGACGTTATTTGGCTCAATGCTTGGAACTTTCGACTTCACGTTCC
TCGCGCAGATCCACTCGTCGTTGGGACCGTTGATGCACTCAATGTTCCGT
ATGTTAGAAGATCTTTCCCGGTTTGGTGCACTTATGCTCGTGTTCATCTT
GGGTTTCGGGCTAGCGTTTTACGCTCTGTTTGGATCCCCGTCGGCAATGC
TGCCGGAAGGGGGAGATATTTCCAACTACGATACATACTTCTCGTCGTTG
CTGACGTTATTTGGCTCAATGCTTGGAACTTTCGACTTCACGGTTTTCAG
TGGGACTCCGATGGCCGAAGCGGGAGTCTTCCTACTCGTGGTTTTTCTAT
GCTTGATGAACGTTACCCTTCTGAACCTTCTCATTGCCATCCTGGCTACC
ACACACGCAAAGGTGGAGGGGAACAGCGACAAAGAGGCTGTCTTGTCCGA
GGCCCTTATCATCAGACAGTACAGGTTTTCAGTGGGACTCCGATGGCCGA
AGCGGGAGTCTTCCTACTCGTGGTTTTTCTATGCTTGATGAACGTTACCC
TTCTGAACCTTCTCATTGCCATCCTGGCTACCACACACGCAAAGGTGGAG
GGGAACAGCGACAAAGAGGCTGTCTTGTCCGAGGCCCTTATCATCAGACA
GTACAGGCGGGCGATGCGCAGCGACTCCCTCCCACCCCCTCTGAATCTTC
CCCAAGAGCTCCTATGTCACCTCTGCTGGAGGAACAAGGAGCGTGTGAAG
GAACTTTTCGCCCGAGGTATCTTCTGGCTTATCACTGGACCCGTGGCCAT
AGCAGCAACAGCCGTACTATGGGCGGCGTCCCTTCCACTGACGCTGGCAT
GGGCAGCACGCGTGTTGCGAGCGGGCGGACTGTCCATGACCGTGCCGGTC
ATTCTCGGCATCAGTTTCAACCTGGGAGTAGCCCCTCTTTTGACCGCTTG
GCTGTGGCTGCTTGGAATGGTTGATATATGGCGCGTTGGGGACGGAGTCA
TGGAGGCGGGCGATGCGCAGCGACTCCCTCCCACCCCCTCTGAATCTTCC
CCAAGAGCTCCTATGTCACCTCTGCTGGAGGAACAAGGAGCGTGTGAAGG
AACTTTTCGCCCGAGGTATCTTCTGGCTTATCACTGGACCCGTGGCCATA
GCAGCAACAGCCGTACTATGGGCGGCGTCCCTTCCACTGACGCTGGCATG
GGCAGCACGCGTGTTGCGAGCGGGCGGACTGTCCATGACCGTGCCGGTCA
TTCTCGGCATCAGTTTCAACCTGGGAGTAGCCCCTCTTTTGACCGCTTGG
CTGTGGCTGCTTGGAATGGTTGATATATGGCGCGTTGGGGACGGAGTCAT
GGAGACGAGCGACCTCAACGAGATTAAAGTGTCAAGGGCACAGAGGAGGA
AAATCTACGCTGGTAGCCCGACCTCGTCCGTCGCCAACATTGCCTTCGCA
GCTATCACAGCGAAATCGTCACAGGGTTCTGCAACGAGCGACCTCAACGA
GATTAAAGTGTCAAGGGCACAGAGGAGGAAAATCTACGCTGGTAGCCCGA
CCTCGTCCGTCGCCAACATTGCCTTCGCAGCTATCACAGCGAAATCGTCA
CAGGGTTCTGCATCCCATACGTCCGACGGCATGCAAGGTGGTGAAGGGGG
TGGAGGTATAAAGGACTCGTCAAAACTTTGGCAGGAAGCCGCCGTGCTCC
GTGGAATTGGCACTGCCGATGGCGCCACCGGAGCTCGCCAGCAAGGGTTT
AATGTAGCTGTGGCATTACGTTTCTCGCATGGCTTGACTGTACAGCAACT
TCGGGAGGCTCTTCATGACCGTTCGAAGGTCACGGATCAGGTCCGTGAGC
ACGTGTGATCCCATACGTCCGACGGCATGCAAGGTGGTGAAGGGGGTGGA
GGTATAAAGGACTCGTCAAAACTTTGGCAGGAAGCCGCCGTGCTCCGTGG
AATTGGCACTGCCGATGGCGCCACCGGAGCTCGCCAGCAAGGGTTTAATG
TAGCTGTGGCATTACGTTTCTCGCATGGCTTGACTGTACAGCAACTTCGG
GAGGCTCTTCATGACCGTTCGAAGGTCACGGATCAGGTCCGTGAGCACGT
GTGA
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