mRNA_H-elongata_contig171036.4385.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	mRNA_H-elongata_contig171036.4385.1
Unique Name	mRNA_H-elongata_contig171036.4385.1
Type	mRNA
Organism	Himanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)

Homology

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BLAST of mRNA_H-elongata_contig171036.4385.1 vs. uniprot
Match: D7G825_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G825_ECTSI)

HSP 1 Score: 190 bits (483), Expect = 7.050e-60
Identity = 95/104 (91.35%), Postives = 98/104 (94.23%), Query Frame = 1

Query:    4 GEDFGQKIDLTVRIREILRNYPEGTSILKELVQNADDAGAREVRLCLDHRRHGITGLPSPKLDQFQGPALLVYNDGVFTETDFRSIQRIGDSLKKDTSKGGKTG 315
            GEDFGQKIDLTVRIREILRNYPEGTSILKELVQNADDAGAREVRLCLD R+HG  GLPS  L QFQGPALLV+NDGVFT+TDFRSIQRIGDSLKKDTSKGGKTG
Sbjct:    9 GEDFGQKIDLTVRIREILRNYPEGTSILKELVQNADDAGAREVRLCLDLRQHGTEGLPSLALAQFQGPALLVFNDGVFTDTDFRSIQRIGDSLKKDTSKGGKTG 112

[Close]

BLAST of mRNA_H-elongata_contig171036.4385.1 vs. uniprot
Match: A0A3M6VS29_9STRA (Uncharacterized protein n=1 Tax=Peronospora effusa TaxID=542832 RepID=A0A3M6VS29_9STRA)

HSP 1 Score: 161 bits (408), Expect = 1.080e-48
Identity = 79/104 (75.96%), Postives = 88/104 (84.62%), Query Frame = 1

Query:    4 GEDFGQKIDLTVRIREILRNYPEGTSILKELVQNADDAGAREVRLCLDHRRHGITGLPSPKLDQFQGPALLVYNDGVFTETDFRSIQRIGDSLKKDTSKGGKTG 315
            G+DFGQKIDLTVRIREILRNYPEGTSI KE+VQNADDAGA EV LCLD+R+H  T L   KL  FQGP+LLV+N+  FT+ DF+SIQRIGDSLKKD SKG KTG
Sbjct:    8 GDDFGQKIDLTVRIREILRNYPEGTSIFKEMVQNADDAGATEVNLCLDYRQHATTKLAYEKLGPFQGPSLLVHNNATFTDADFQSIQRIGDSLKKDNSKGWKTG 111

[Close]

BLAST of mRNA_H-elongata_contig171036.4385.1 vs. uniprot
Match: A0A6A3FKD4_9STRA (UBA domain-containing protein n=4 Tax=Phytophthora TaxID=4783 RepID=A0A6A3FKD4_9STRA)

HSP 1 Score: 166 bits (419), Expect = 2.120e-45
Identity = 80/104 (76.92%), Postives = 90/104 (86.54%), Query Frame = 1

Query:    4 GEDFGQKIDLTVRIREILRNYPEGTSILKELVQNADDAGAREVRLCLDHRRHGITGLPSPKLDQFQGPALLVYNDGVFTETDFRSIQRIGDSLKKDTSKGGKTG 315
            G+DFGQKIDLTVRIREILRNYPEGTSI KE+VQNADDAGA EV LCLD+R+H  TGL   KL+ FQGP+LLV+N+  FT+ DF+SIQRIGDSLKKD SKG KTG
Sbjct:    9 GDDFGQKIDLTVRIREILRNYPEGTSIFKEMVQNADDAGATEVNLCLDYRQHASTGLAYEKLESFQGPSLLVHNNATFTDADFQSIQRIGDSLKKDNSKGWKTG 112

[Close]

BLAST of mRNA_H-elongata_contig171036.4385.1 vs. uniprot
Match: A0A6A4E802_9STRA (RING-type domain-containing protein n=6 Tax=Phytophthora TaxID=4783 RepID=A0A6A4E802_9STRA)

HSP 1 Score: 166 bits (419), Expect = 2.140e-45
Identity = 80/104 (76.92%), Postives = 90/104 (86.54%), Query Frame = 1

Query:    4 GEDFGQKIDLTVRIREILRNYPEGTSILKELVQNADDAGAREVRLCLDHRRHGITGLPSPKLDQFQGPALLVYNDGVFTETDFRSIQRIGDSLKKDTSKGGKTG 315
            G+DFGQKIDLTVRIREILRNYPEGTSI KE+VQNADDAGA EV LCLD+R+H  TGL   KL+ FQGP+LLV+N+  FT+ DF+SIQRIGDSLKKD SKG KTG
Sbjct:    9 GDDFGQKIDLTVRIREILRNYPEGTSIFKEMVQNADDAGATEVNLCLDYRQHASTGLAYEKLESFQGPSLLVHNNATFTDADFQSIQRIGDSLKKDNSKGWKTG 112

[Close]

BLAST of mRNA_H-elongata_contig171036.4385.1 vs. uniprot
Match: G4YZA0_PHYSP (Uncharacterized protein n=1 Tax=Phytophthora sojae (strain P6497) TaxID=1094619 RepID=G4YZA0_PHYSP)

HSP 1 Score: 164 bits (416), Expect = 5.430e-45
Identity = 80/104 (76.92%), Postives = 89/104 (85.58%), Query Frame = 1

Query:    4 GEDFGQKIDLTVRIREILRNYPEGTSILKELVQNADDAGAREVRLCLDHRRHGITGLPSPKLDQFQGPALLVYNDGVFTETDFRSIQRIGDSLKKDTSKGGKTG 315
            G+DFGQKIDLTVRIREILRNYPEGTSI KE+VQNADDAGA EV LCLD+R+H  TGL   KL  FQGP+LLV+N+  FT+ DF+SIQRIGDSLKKD SKG KTG
Sbjct:    9 GDDFGQKIDLTVRIREILRNYPEGTSIFKEMVQNADDAGATEVNLCLDYRQHASTGLAYEKLGSFQGPSLLVHNNATFTDADFQSIQRIGDSLKKDNSKGWKTG 112

[Close]

BLAST of mRNA_H-elongata_contig171036.4385.1 vs. uniprot
Match: A0A8K1CIU3_PYTOL (Uncharacterized protein n=1 Tax=Pythium oligandrum TaxID=41045 RepID=A0A8K1CIU3_PYTOL)

HSP 1 Score: 164 bits (415), Expect = 7.410e-45
Identity = 79/104 (75.96%), Postives = 89/104 (85.58%), Query Frame = 1

Query:    4 GEDFGQKIDLTVRIREILRNYPEGTSILKELVQNADDAGAREVRLCLDHRRHGITGLPSPKLDQFQGPALLVYNDGVFTETDFRSIQRIGDSLKKDTSKGGKTG 315
            G+DFGQKIDLTVRIREILRNYPEGTSI KE+VQNADDAGA EV+ CLDHR+H    L   KL+ FQGP+LLV+N+  FT+ DF+SIQRIGDSLKKDTSKG KTG
Sbjct:    9 GDDFGQKIDLTVRIREILRNYPEGTSIFKEMVQNADDAGATEVQFCLDHRQHASDNLAYRKLESFQGPSLLVFNNATFTDADFQSIQRIGDSLKKDTSKGWKTG 112

[Close]

BLAST of mRNA_H-elongata_contig171036.4385.1 vs. uniprot
Match: A0A833TEE0_PHYIN (UBA domain-containing protein n=1 Tax=Phytophthora infestans TaxID=4787 RepID=A0A833TEE0_PHYIN)

HSP 1 Score: 164 bits (414), Expect = 9.920e-45
Identity = 79/104 (75.96%), Postives = 89/104 (85.58%), Query Frame = 1

Query:    4 GEDFGQKIDLTVRIREILRNYPEGTSILKELVQNADDAGAREVRLCLDHRRHGITGLPSPKLDQFQGPALLVYNDGVFTETDFRSIQRIGDSLKKDTSKGGKTG 315
            G+DFGQKIDLTVRIREILRNYPEGTSI KE+VQNADDAGA EV LCLD+R+H  TGL   KL  FQGP+LLV+N+  F++ DF+SIQRIGDSLKKD SKG KTG
Sbjct:    9 GDDFGQKIDLTVRIREILRNYPEGTSIFKEMVQNADDAGATEVNLCLDYRQHAATGLAYEKLSSFQGPSLLVHNNATFSDADFQSIQRIGDSLKKDNSKGWKTG 112

[Close]

BLAST of mRNA_H-elongata_contig171036.4385.1 vs. uniprot
Match: W2NNW2_PHYPR (UBA domain-containing protein n=1 Tax=Phytophthora parasitica TaxID=4792 RepID=W2NNW2_PHYPR)

HSP 1 Score: 163 bits (412), Expect = 1.860e-44
Identity = 79/104 (75.96%), Postives = 89/104 (85.58%), Query Frame = 1

Query:    4 GEDFGQKIDLTVRIREILRNYPEGTSILKELVQNADDAGAREVRLCLDHRRHGITGLPSPKLDQFQGPALLVYNDGVFTETDFRSIQRIGDSLKKDTSKGGKTG 315
            G+DFGQKIDLTVRIREILRNYPEGTSI KE+VQNADDAGA EV LCLD+R+H  TGL   KL  FQGP+LLV+N+  F++ DF+SIQRIGDSLKKD SKG KTG
Sbjct:    9 GDDFGQKIDLTVRIREILRNYPEGTSIFKEMVQNADDAGATEVNLCLDYRQHAATGLAYEKLASFQGPSLLVHNNATFSDADFQSIQRIGDSLKKDNSKGWKTG 112

[Close]

BLAST of mRNA_H-elongata_contig171036.4385.1 vs. uniprot
Match: A0A329RM56_9STRA (Uncharacterized protein n=1 Tax=Phytophthora cactorum TaxID=29920 RepID=A0A329RM56_9STRA)

HSP 1 Score: 163 bits (412), Expect = 1.880e-44
Identity = 79/104 (75.96%), Postives = 89/104 (85.58%), Query Frame = 1

Query:    4 GEDFGQKIDLTVRIREILRNYPEGTSILKELVQNADDAGAREVRLCLDHRRHGITGLPSPKLDQFQGPALLVYNDGVFTETDFRSIQRIGDSLKKDTSKGGKTG 315
            G+DFGQKIDLTVRIREILRNYPEGTSI KE+VQNADDAGA EV LCLD+R+H  TGL   KL  FQGP+LLV+N+  F++ DF+SIQRIGDSLKKD SKG KTG
Sbjct:    9 GDDFGQKIDLTVRIREILRNYPEGTSIFKEMVQNADDAGATEVNLCLDYRQHAATGLAYEKLASFQGPSLLVHNNATFSDADFQSIQRIGDSLKKDNSKGWKTG 112

[Close]

BLAST of mRNA_H-elongata_contig171036.4385.1 vs. uniprot
Match: W2RAY0_PHYPN (Uncharacterized protein n=38 Tax=Phytophthora TaxID=4783 RepID=W2RAY0_PHYPN)

HSP 1 Score: 163 bits (412), Expect = 1.880e-44
Identity = 79/104 (75.96%), Postives = 89/104 (85.58%), Query Frame = 1

Query:    4 GEDFGQKIDLTVRIREILRNYPEGTSILKELVQNADDAGAREVRLCLDHRRHGITGLPSPKLDQFQGPALLVYNDGVFTETDFRSIQRIGDSLKKDTSKGGKTG 315
            G+DFGQKIDLTVRIREILRNYPEGTSI KE+VQNADDAGA EV LCLD+R+H  TGL   KL  FQGP+LLV+N+  F++ DF+SIQRIGDSLKKD SKG KTG
Sbjct:    9 GDDFGQKIDLTVRIREILRNYPEGTSIFKEMVQNADDAGATEVNLCLDYRQHAATGLAYEKLASFQGPSLLVHNNATFSDADFQSIQRIGDSLKKDNSKGWKTG 112

The following BLAST results are available for this feature:

BLAST of mRNA_H-elongata_contig171036.4385.1 vs. uniprot

BLAST of mRNA_H-elongata_contig171036.4385.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25


Match Name	E-value	Identity	Description
D7G825_ECTSI	7.050e-60	91.35	Uncharacterized protein n=1 Tax=Ectocarpus silicul...	[more]
A0A3M6VS29_9STRA	1.080e-48	75.96	Uncharacterized protein n=1 Tax=Peronospora effusa...	[more]
A0A6A3FKD4_9STRA	2.120e-45	76.92	UBA domain-containing protein n=4 Tax=Phytophthora...	[more]
A0A6A4E802_9STRA	2.140e-45	76.92	RING-type domain-containing protein n=6 Tax=Phytop...	[more]
G4YZA0_PHYSP	5.430e-45	76.92	Uncharacterized protein n=1 Tax=Phytophthora sojae...	[more]
A0A8K1CIU3_PYTOL	7.410e-45	75.96	Uncharacterized protein n=1 Tax=Pythium oligandrum...	[more]
A0A833TEE0_PHYIN	9.920e-45	75.96	UBA domain-containing protein n=1 Tax=Phytophthora...	[more]
W2NNW2_PHYPR	1.860e-44	75.96	UBA domain-containing protein n=1 Tax=Phytophthora...	[more]
A0A329RM56_9STRA	1.880e-44	75.96	Uncharacterized protein n=1 Tax=Phytophthora cacto...	[more]
W2RAY0_PHYPN	1.880e-44	75.96	Uncharacterized protein n=38 Tax=Phytophthora TaxI...	[more]

Pages

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
H-elongata_contig171036	contig	H-elongata_contig171036:574..1218 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Diamond blastx: OGS1.0 vs UniRef90	2022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious	2021-02-24

Properties


Property Name	Value
Taxonomic scope	Eukaryota
Seed ortholog score	190.3
Seed ortholog evalue	4.7e-46
Seed eggNOG ortholog	2880.D7G825
KEGG ko	ko:K17592
GOs	GO:0003674,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005737,GO:0005739,GO:0006457,GO:0008150,GO:0009987,GO:0030424,GO:0030425,GO:0030544,GO:0031072,GO:0036477,GO:0042995,GO:0043005,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0044087,GO:0044424,GO:0044444,GO:0044463,GO:0044464,GO:0044877,GO:0048519,GO:0048523,GO:0050789,GO:0050794,GO:0051087,GO:0051128,GO:0051129,GO:0065007,GO:0070628,GO:0070852,GO:0090083,GO:0090084,GO:0097447,GO:0097458,GO:0120025,GO:0120038
EggNOG free text desc.	negative regulation of inclusion body assembly
EggNOG OGs	28IDA@1,2QQPY@2759
COG Functional cat.	S
Best tax level	Eukaryota
Best eggNOG OG	NA\|NA\|NA
BRITE	ko00000,ko01009
Hectar predicted targeting category	other localisation
Exons	2
Model size	315
Cds size	315
Stop	0
Start	0

Relationships

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
1622929995.6792603-CDS-H-elongata_contig171036:573..634	1622929995.6792603-CDS-H-elongata_contig171036:573..634	Himanthalia elongata Himel1 dioecious	CDS	H-elongata_contig171036 574..634 -
1691679239.2382908-CDS-H-elongata_contig171036:573..634	1691679239.2382908-CDS-H-elongata_contig171036:573..634	Himanthalia elongata Himel1 dioecious	CDS	H-elongata_contig171036 574..634 -
1622929995.6944814-CDS-H-elongata_contig171036:964..1218	1622929995.6944814-CDS-H-elongata_contig171036:964..1218	Himanthalia elongata Himel1 dioecious	CDS	H-elongata_contig171036 965..1218 -
1691679239.2505162-CDS-H-elongata_contig171036:964..1218	1691679239.2505162-CDS-H-elongata_contig171036:964..1218	Himanthalia elongata Himel1 dioecious	CDS	H-elongata_contig171036 965..1218 -

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
mRNA_H-elongata_contig171036.4385.1	prot_H-elongata_contig171036.4385.1	Himanthalia elongata Himel1 dioecious	polypeptide	H-elongata_contig171036 574..1218 -

Sequences

The following sequences are available for this feature:

protein sequence
mRNA from alignment at H-elongata_contig171036:574..1218-
coding sequence from alignment at H-elongata_contig171036:574..1218-

protein sequence of mRNA_H-elongata_contig171036.4385.1

>prot_H-elongata_contig171036.4385.1 ID=prot_H-elongata_contig171036.4385.1|Name=mRNA_H-elongata_contig171036.4385.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=105bp
LGEDFGQKIDLTVRIREILRNYPEGTSILKELVQNADDAGAREVRLCLDH
RRHGITGLPSPKLDQFQGPALLVYNDGVFTETDFRSIQRIGDSLKKDTSK
GGKTG

mRNA from alignment at H-elongata_contig171036:574..1218-

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_H-elongata_contig171036.4385.1 ID=mRNA_H-elongata_contig171036.4385.1|Name=mRNA_H-elongata_contig171036.4385.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=645bp|location=Sequence derived from alignment at H-elongata_contig171036:574..1218- (Himanthalia elongata Himel1 dioecious)
CTAGGAGAGGACTTTGGTCAGAAGATCGACCTGACGGTTAGGATCCGCGA
GATTCTGCGAAACTACCCCGAGGGCACGTCGATCTTGAAGGAGCTCGTGC
AGAACGCCGACGATGCCGGGGCGCGGGAGGTTCGACTGTGCCTTGACCAT
CGCCGGCACGGGATAACCGGGCTCCCCAGCCCCAAACTTGACCAGTTCCA
GGGACCGGCGTTACTAGTCTATAACGATGGGGTTTTCACGGAAACTGACT
TCAGGTACAAAGGCGTGAAATGATAAGCAAGGGGTTGTATTTTTAGTGCC
TCTTGCTCGTTCTGCCTCGTTTTGCCGTATTAACGTGTTGATATGTAATA
TAACTCCGGTAGGTTTTCGGTGAAATACGCACACCAATCAAAGCGCTCGC
GTGGCGCGCGCTTGTAAATCTACTTGGAAGAATAATAGATCAGGGTAGAG
GATGGTAGGCTTAGTATCCACTCGGACATGCGCGCGAAACTGGTATGTAT
ATTTTACATCGCATCCTTTGCTGTTTCAAAACGTCGCTCTCTTTTTTTCT
CGTATGTGGTGATTTGTTGGGACGTTTCTCCCAGGTCTATCCAGCGAATA
GGCGATTCTCTCAAGAAAGACACATCAAAGGGTGGGAAGACAGGT

Coding sequence (CDS) from alignment at H-elongata_contig171036:574..1218-

>mRNA_H-elongata_contig171036.4385.1 ID=mRNA_H-elongata_contig171036.4385.1|Name=mRNA_H-elongata_contig171036.4385.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=630bp|location=Sequence derived from alignment at H-elongata_contig171036:574..1218- (Himanthalia elongata Himel1 dioecious)
CTAGGAGAGGACTTTGGTCAGAAGATCGACCTGACGGTTAGGATCCGCGA
GATTCTGCGAAACTACCCCGAGGGCACGTCGATCTTGAAGGAGCTCGTGC
AGAACGCCGACGATGCCGGGGCGCGGGAGGTTCGACTGTGCCTTGACCAT
CGCCGGCACGGGATAACCGGGCTCCCCAGCCCCAAACTTGACCAGTTCCA
GGGACCGGCGTTACTAGTCTATAACGATGGGGTTTTCACGGAAACTGACT
TCAGCTAGGAGAGGACTTTGGTCAGAAGATCGACCTGACGGTTAGGATCC
GCGAGATTCTGCGAAACTACCCCGAGGGCACGTCGATCTTGAAGGAGCTC
GTGCAGAACGCCGACGATGCCGGGGCGCGGGAGGTTCGACTGTGCCTTGA
CCATCGCCGGCACGGGATAACCGGGCTCCCCAGCCCCAAACTTGACCAGT
TCCAGGGACCGGCGTTACTAGTCTATAACGATGGGGTTTTCACGGAAACT
GACTTCAGGTCTATCCAGCGAATAGGCGATTCTCTCAAGAAAGACACATC
AAAGGGTGGGAAGACAGGTGTCTATCCAGCGAATAGGCGATTCTCTCAAG
AAAGACACATCAAAGGGTGGGAAGACAGGT