mRNA_H-elongata_contig170692.4369.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig170692.4369.1
Unique NamemRNA_H-elongata_contig170692.4369.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig170692.4369.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig170692contigH-elongata_contig170692:762..1365 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size606
Cds size318
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929994.0789368-CDS-H-elongata_contig170692:761..10791622929994.0789368-CDS-H-elongata_contig170692:761..1079Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig170692 762..1079 +
1691679238.5659897-CDS-H-elongata_contig170692:761..10791691679238.5659897-CDS-H-elongata_contig170692:761..1079Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig170692 762..1079 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929994.0951836-UTR-H-elongata_contig170692:1079..13651622929994.0951836-UTR-H-elongata_contig170692:1079..1365Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig170692 1080..1365 +
1691679238.5733883-UTR-H-elongata_contig170692:1079..13651691679238.5733883-UTR-H-elongata_contig170692:1079..1365Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig170692 1080..1365 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig170692.4369.1prot_H-elongata_contig170692.4369.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig170692 762..1079 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig170692.4369.1

>prot_H-elongata_contig170692.4369.1 ID=prot_H-elongata_contig170692.4369.1|Name=mRNA_H-elongata_contig170692.4369.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=106bp
LPPVVWGARKNLEKKQVSNSPTSLKSFFFAPDDSQLIRSLPRLRKAYNRL
AHTENVAANNNLLVPLAQKRRTEKKNILNHAPDAFRYIKAINLLHLRNRG
ESEAH*
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mRNA from alignment at H-elongata_contig170692:762..1365+

Legend: CDSpolypeptideUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig170692.4369.1 ID=mRNA_H-elongata_contig170692.4369.1|Name=mRNA_H-elongata_contig170692.4369.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=604bp|location=Sequence derived from alignment at H-elongata_contig170692:762..1365+ (Himanthalia elongata Himel1 dioecious)
TTGCCCCCAGTAGTGTGGGGAGCTAGGAAAAACTTGGAAAAAAAACAAGT
AAGTAACTCGCCTACTTCTTTAAAGAGTTTTTTTTTCGCCCCCGATGATA
GTCAGTTGATCAGAAGCCTCCCAAGACTGCGCAAGGCATACAACAGATTA
GCCCATACAGAAAACGTAGCTGCTAATAATAATCTCTTGGTACCTTTGGC
ACAAAAACGGCGGACCGAAAAGAAAAACATACTAAATCACGCACCAGACG
CGTTCCGATACATCAAAGCCATCAATCTCTTGCATCTTCGCAACCGGGGC
GAAAGTGAGGCGCATTAGATTAGAACGGAAACTCTTCAATTTTCCGCAAT
CGATTTTGCGCCGCTCCGTAGGATGCCAAGGTTAGATACAGATAATGACA
AGAGCCGGGGTCAGTAAAACAGTGCATCACACCTTCAATTTTATCTTTCC
TTCCCGTCGCAAACGCAGCCTTGTTAGACACTTTGTCAGGCCTCCTATCC
GGCTGCACCAAGCGTACAGAGTAAACTTCAAGGAAATCTGCGCCTAAAAC
TCAGTTTTGTTAGGTTCAAGTTAAGCTTGACAAAAAAAAAAACGAAACTT
GTTT
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Coding sequence (CDS) from alignment at H-elongata_contig170692:762..1365+

>mRNA_H-elongata_contig170692.4369.1 ID=mRNA_H-elongata_contig170692.4369.1|Name=mRNA_H-elongata_contig170692.4369.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=636bp|location=Sequence derived from alignment at H-elongata_contig170692:762..1365+ (Himanthalia elongata Himel1 dioecious)
TTGCCCCCAGTAGTGTGGGGAGCTAGGAAAAACTTGGAAAAAAAACAAGT
AAGTAACTCGCCTACTTCTTTAAAGAGTTTTTTTTTCGCCCCCGATGATA
GTCAGTTGATCAGAAGCCTCCCAAGACTGCGCAAGGCATACAACAGATTA
GCCCATACAGAAAACGTAGCTGCTAATAATAATCTCTTGGTACCTTTGGC
ACAAAAACGGCGGACCGAAAAGAAAAACATACTAAATCACGCACCAGACG
CGTTCCGATACATCAAAGCCATCAATCTCTTGCATCTTCGCAACCGGGGC
GAAAGTGAGGCGCATTAGTTGCCCCCAGTAGTGTGGGGAGCTAGGAAAAA
CTTGGAAAAAAAACAAGTAAGTAACTCGCCTACTTCTTTAAAGAGTTTTT
TTTTCGCCCCCGATGATAGTCAGTTGATCAGAAGCCTCCCAAGACTGCGC
AAGGCATACAACAGATTAGCCCATACAGAAAACGTAGCTGCTAATAATAA
TCTCTTGGTACCTTTGGCACAAAAACGGCGGACCGAAAAGAAAAACATAC
TAAATCACGCACCAGACGCGTTCCGATACATCAAAGCCATCAATCTCTTG
CATCTTCGCAACCGGGGCGAAAGTGAGGCGCATTAG
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