mRNA_H-elongata_contig170586.4366.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig170586.4366.1
Unique NamemRNA_H-elongata_contig170586.4366.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
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BLAST of mRNA_H-elongata_contig170586.4366.1 vs. uniprot
Match: A0A3L6V663_9STRA (Histone H4 n=2 Tax=Stramenopiles TaxID=33634 RepID=A0A3L6V663_9STRA)

HSP 1 Score: 195 bits (495), Expect = 1.540e-62
Identity = 100/105 (95.24%), Postives = 102/105 (97.14%), Query Frame = 1 
Query:   13 ANMSGRVKGGKGLGKGGAKRHRKVFRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKVFLENVIRDSVTYTEHARHKTVTAMDVIYALKRQGRTLYGFGG 327
            +NMSGR KGGKGLGKGGAKRHRKV RDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKVFLENVIRDSVTYTEHAR KTVTAMDV+YALKRQGRTLYGFGG
Sbjct:   21 SNMSGRGKGGKGLGKGGAKRHRKVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKVFLENVIRDSVTYTEHARRKTVTAMDVVYALKRQGRTLYGFGG 125
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BLAST of mRNA_H-elongata_contig170586.4366.1 vs. uniprot
Match: W5QFN7_SHEEP (Histone H4 n=3 Tax=Bilateria TaxID=33213 RepID=W5QFN7_SHEEP)

HSP 1 Score: 193 bits (490), Expect = 5.490e-62
Identity = 99/107 (92.52%), Postives = 102/107 (95.33%), Query Frame = 1 
Query:    7 HGANMSGRVKGGKGLGKGGAKRHRKVFRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKVFLENVIRDSVTYTEHARHKTVTAMDVIYALKRQGRTLYGFGG 327
            H  NMSGR KGGKGLGKGGAKRHRKV RDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKVFLENVIRD+VTYTEHA+ KTVTAMDV+YALKRQGRTLYGFGG
Sbjct:    4 HLGNMSGRGKGGKGLGKGGAKRHRKVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKVFLENVIRDAVTYTEHAKRKTVTAMDVVYALKRQGRTLYGFGG 110
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BLAST of mRNA_H-elongata_contig170586.4366.1 vs. uniprot
Match: A0A024G0M5_9STRA (Histone H4 n=40 Tax=Stramenopiles TaxID=33634 RepID=A0A024G0M5_9STRA)

HSP 1 Score: 192 bits (489), Expect = 6.240e-62
Identity = 99/103 (96.12%), Postives = 100/103 (97.09%), Query Frame = 1 
Query:   19 MSGRVKGGKGLGKGGAKRHRKVFRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKVFLENVIRDSVTYTEHARHKTVTAMDVIYALKRQGRTLYGFGG 327
            MSGR KGGKGLGKGGAKRHRKV RDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKVFLENVIRDSVTYTEHAR KTVTAMDV+YALKRQGRTLYGFGG
Sbjct:    1 MSGRGKGGKGLGKGGAKRHRKVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKVFLENVIRDSVTYTEHARRKTVTAMDVVYALKRQGRTLYGFGG 103
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BLAST of mRNA_H-elongata_contig170586.4366.1 vs. uniprot
Match: A0A5B7AV35_DAVIN (Histone H4 (Fragment) n=1 Tax=Davidia involucrata TaxID=16924 RepID=A0A5B7AV35_DAVIN)

HSP 1 Score: 193 bits (491), Expect = 6.250e-62
Identity = 99/109 (90.83%), Postives = 102/109 (93.58%), Query Frame = 1 
Query:    1 RRHGANMSGRVKGGKGLGKGGAKRHRKVFRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKVFLENVIRDSVTYTEHARHKTVTAMDVIYALKRQGRTLYGFGG 327
            R  G  MSGR KGGKGLGKGGAKRHRKV RDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLK+FLENVIRD+VTYTEHAR KTVTAMDV+YALKRQGRTLYGFGG
Sbjct:   17 RERGCKMSGRGKGGKGLGKGGAKRHRKVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKIFLENVIRDAVTYTEHARRKTVTAMDVVYALKRQGRTLYGFGG 125
[Close]
BLAST of mRNA_H-elongata_contig170586.4366.1 vs. uniprot
Match: A0A1G4M1Q1_ANAPH (Core histone H2A/H2B/H3/H4 n=1 Tax=Anaplasma phagocytophilum TaxID=948 RepID=A0A1G4M1Q1_ANAPH)

HSP 1 Score: 194 bits (492), Expect = 6.920e-62
Identity = 99/105 (94.29%), Postives = 102/105 (97.14%), Query Frame = 1 
Query:   13 ANMSGRVKGGKGLGKGGAKRHRKVFRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKVFLENVIRDSVTYTEHARHKTVTAMDVIYALKRQGRTLYGFGG 327
            ANMSGR KGGKGLGKGGAKRHRKV RDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKVFLENVIRD+VTYTEHA+ KTVTAMDV+YALKRQGRTLYGFGG
Sbjct:   35 ANMSGRGKGGKGLGKGGAKRHRKVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKVFLENVIRDAVTYTEHAKRKTVTAMDVVYALKRQGRTLYGFGG 139
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BLAST of mRNA_H-elongata_contig170586.4366.1 vs. uniprot
Match: H4_SOLLC (Histone H4 n=13 Tax=cellular organisms TaxID=131567 RepID=H4_SOLLC)

HSP 1 Score: 192 bits (488), Expect = 8.870e-62
Identity = 98/103 (95.15%), Postives = 100/103 (97.09%), Query Frame = 1 
Query:   19 MSGRVKGGKGLGKGGAKRHRKVFRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKVFLENVIRDSVTYTEHARHKTVTAMDVIYALKRQGRTLYGFGG 327
            MSGR KGGKGLGKGGAKRHRKV RDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLK+FLENVIRDSVTYTEHAR KTVTAMDV+YALKRQGRTLYGFGG
Sbjct:    1 MSGRGKGGKGLGKGGAKRHRKVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKIFLENVIRDSVTYTEHARRKTVTAMDVVYALKRQGRTLYGFGG 103
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BLAST of mRNA_H-elongata_contig170586.4366.1 vs. uniprot
Match: G3UKU6_LOXAF (Histone H4 n=3 Tax=Bilateria TaxID=33213 RepID=G3UKU6_LOXAF)

HSP 1 Score: 192 bits (488), Expect = 9.150e-62
Identity = 98/104 (94.23%), Postives = 101/104 (97.12%), Query Frame = 1 
Query:   16 NMSGRVKGGKGLGKGGAKRHRKVFRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKVFLENVIRDSVTYTEHARHKTVTAMDVIYALKRQGRTLYGFGG 327
            NMSGR KGGKGLGKGGAKRHRKV RDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKVFLENVIRD+VTYTEHA+ KTVTAMDV+YALKRQGRTLYGFGG
Sbjct:    1 NMSGRGKGGKGLGKGGAKRHRKVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKVFLENVIRDAVTYTEHAKRKTVTAMDVVYALKRQGRTLYGFGG 104
[Close]
BLAST of mRNA_H-elongata_contig170586.4366.1 vs. uniprot
Match: A0A0B6YRU8_9EUPU (Histone H4 (Fragment) n=5 Tax=Bilateria TaxID=33213 RepID=A0A0B6YRU8_9EUPU)

HSP 1 Score: 192 bits (488), Expect = 9.750e-62
Identity = 98/104 (94.23%), Postives = 101/104 (97.12%), Query Frame = 1 
Query:   16 NMSGRVKGGKGLGKGGAKRHRKVFRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKVFLENVIRDSVTYTEHARHKTVTAMDVIYALKRQGRTLYGFGG 327
            NMSGR KGGKGLGKGGAKRHRKV RDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKVFLENVIRD+VTYTEHA+ KTVTAMDV+YALKRQGRTLYGFGG
Sbjct:    3 NMSGRGKGGKGLGKGGAKRHRKVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKVFLENVIRDAVTYTEHAKRKTVTAMDVVYALKRQGRTLYGFGG 106
[Close]
BLAST of mRNA_H-elongata_contig170586.4366.1 vs. uniprot
Match: A0A1D1YKZ1_9ARAE (Histone H4 (Fragment) n=1 Tax=Anthurium amnicola TaxID=1678845 RepID=A0A1D1YKZ1_9ARAE)

HSP 1 Score: 193 bits (490), Expect = 1.080e-61
Identity = 99/106 (93.40%), Postives = 102/106 (96.23%), Query Frame = 1 
Query:   10 GANMSGRVKGGKGLGKGGAKRHRKVFRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKVFLENVIRDSVTYTEHARHKTVTAMDVIYALKRQGRTLYGFGG 327
            GA MSGR KGGKGLGKGGAKRHRKV RDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLK+FLENVIRD+VTYTEHAR KTVTAMDV+YALKRQGRTLYGFGG
Sbjct:   26 GAAMSGRGKGGKGLGKGGAKRHRKVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKIFLENVIRDAVTYTEHARRKTVTAMDVVYALKRQGRTLYGFGG 131
[Close]
BLAST of mRNA_H-elongata_contig170586.4366.1 vs. uniprot
Match: A0A176VS41_MARPO (Histone H4 n=3 Tax=Marchantiophyta TaxID=3195 RepID=A0A176VS41_MARPO)

HSP 1 Score: 194 bits (492), Expect = 1.160e-61
Identity = 99/105 (94.29%), Postives = 102/105 (97.14%), Query Frame = 1 
Query:   13 ANMSGRVKGGKGLGKGGAKRHRKVFRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKVFLENVIRDSVTYTEHARHKTVTAMDVIYALKRQGRTLYGFGG 327
            A MSGR KGGKGLGKGGAKRHRKVFRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLK+FLENVIRD+VTYTEHAR KTVTAMDV+YALKRQGRTLYGFGG
Sbjct:   51 AAMSGRGKGGKGLGKGGAKRHRKVFRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKIFLENVIRDAVTYTEHARRKTVTAMDVVYALKRQGRTLYGFGG 155
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig170586.4366.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A3L6V663_9STRA1.540e-6295.24Histone H4 n=2 Tax=Stramenopiles TaxID=33634 RepID... [more]
W5QFN7_SHEEP5.490e-6292.52Histone H4 n=3 Tax=Bilateria TaxID=33213 RepID=W5Q... [more]
A0A024G0M5_9STRA6.240e-6296.12Histone H4 n=40 Tax=Stramenopiles TaxID=33634 RepI... [more]
A0A5B7AV35_DAVIN6.250e-6290.83Histone H4 (Fragment) n=1 Tax=Davidia involucrata ... [more]
A0A1G4M1Q1_ANAPH6.920e-6294.29Core histone H2A/H2B/H3/H4 n=1 Tax=Anaplasma phago... [more]
H4_SOLLC8.870e-6295.15Histone H4 n=13 Tax=cellular organisms TaxID=13156... [more]
G3UKU6_LOXAF9.150e-6294.23Histone H4 n=3 Tax=Bilateria TaxID=33213 RepID=G3U... [more]
A0A0B6YRU8_9EUPU9.750e-6294.23Histone H4 (Fragment) n=5 Tax=Bilateria TaxID=3321... [more]
A0A1D1YKZ1_9ARAE1.080e-6193.40Histone H4 (Fragment) n=1 Tax=Anthurium amnicola T... [more]
A0A176VS41_MARPO1.160e-6194.29Histone H4 n=3 Tax=Marchantiophyta TaxID=3195 RepI... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig170586contigH-elongata_contig170586:661..990 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score194.5
Seed ortholog evalue2.4e-47
Seed eggNOG ortholog157072.XP_008863623.1
KEGG koko:K11254
KEGG Pathwayko05034,ko05203,ko05322,map05034,map05203,map05322
GOsGO:0000228,GO:0000785,GO:0000786,GO:0000788,GO:0000790,GO:0003674,GO:0003676,GO:0003677,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005694,GO:0006323,GO:0006325,GO:0006333,GO:0006334,GO:0006996,GO:0008150,GO:0009987,GO:0016043,GO:0022607,GO:0031497,GO:0031974,GO:0031981,GO:0032991,GO:0032993,GO:0034622,GO:0034728,GO:0042393,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0043933,GO:0044085,GO:0044422,GO:0044424,GO:0044427,GO:0044428,GO:0044446,GO:0044454,GO:0044464,GO:0044815,GO:0051276,GO:0065003,GO:0065004,GO:0070013,GO:0071103,GO:0071824,GO:0071840,GO:0097159,GO:1901363
EggNOG free text desc.protein heterodimerization activity
EggNOG OGsCOG2036@1,KOG3467@2759
COG Functional cat.B
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko03036
Hectar predicted targeting categoryother localisation
Exons1
Model size330
Cds size312
Stop1
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929993.911573-UTR-H-elongata_contig170586:660..6781622929993.911573-UTR-H-elongata_contig170586:660..678Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig170586 661..678 +
1691679238.518127-UTR-H-elongata_contig170586:660..6781691679238.518127-UTR-H-elongata_contig170586:660..678Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig170586 661..678 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929993.9293592-CDS-H-elongata_contig170586:678..9901622929993.9293592-CDS-H-elongata_contig170586:678..990Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig170586 679..990 +
1691679238.5275602-CDS-H-elongata_contig170586:678..9901691679238.5275602-CDS-H-elongata_contig170586:678..990Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig170586 679..990 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig170586.4366.1prot_H-elongata_contig170586.4366.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig170586 679..990 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig170586.4366.1

>prot_H-elongata_contig170586.4366.1 ID=prot_H-elongata_contig170586.4366.1|Name=mRNA_H-elongata_contig170586.4366.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=104bp
MSGRVKGGKGLGKGGAKRHRKVFRDNIQGITKPAIRRLARRGGVKRISGL
IYEETRGVLKVFLENVIRDSVTYTEHARHKTVTAMDVIYALKRQGRTLYG
FGG*
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mRNA from alignment at H-elongata_contig170586:661..990+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig170586.4366.1 ID=mRNA_H-elongata_contig170586.4366.1|Name=mRNA_H-elongata_contig170586.4366.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=330bp|location=Sequence derived from alignment at H-elongata_contig170586:661..990+ (Himanthalia elongata Himel1 dioecious)
AGACGTCACGGAGCAAACATGTCAGGACGCGTAAAGGGAGGCAAAGGTCT
AGGCAAGGGTGGGGCTAAGCGCCACCGCAAGGTTTTTCGTGATAATATCC
AGGGTATCACAAAGCCCGCGATCCGCCGTCTGGCTCGCCGTGGCGGTGTG
AAGCGCATCTCCGGTCTCATCTACGAAGAGACCCGCGGAGTACTCAAGGT
GTTCTTGGAGAACGTAATCCGCGATTCGGTGACGTACACAGAGCACGCCC
GTCACAAGACCGTTACGGCCATGGATGTGATTTACGCCCTCAAGCGCCAG
GGTCGTACCCTCTATGGTTTTGGTGGCTAA
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Coding sequence (CDS) from alignment at H-elongata_contig170586:661..990+

>mRNA_H-elongata_contig170586.4366.1 ID=mRNA_H-elongata_contig170586.4366.1|Name=mRNA_H-elongata_contig170586.4366.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=624bp|location=Sequence derived from alignment at H-elongata_contig170586:661..990+ (Himanthalia elongata Himel1 dioecious)
ATGTCAGGACGCGTAAAGGGAGGCAAAGGTCTAGGCAAGGGTGGGGCTAA
GCGCCACCGCAAGGTTTTTCGTGATAATATCCAGGGTATCACAAAGCCCG
CGATCCGCCGTCTGGCTCGCCGTGGCGGTGTGAAGCGCATCTCCGGTCTC
ATCTACGAAGAGACCCGCGGAGTACTCAAGGTGTTCTTGGAGAACGTAAT
CCGCGATTCGGTGACGTACACAGAGCACGCCCGTCACAAGACCGTTACGG
CCATGGATGTGATTTACGCCCTCAAGCGCCAGGGTCGTACCCTCTATGGT
TTTGGTGGCTAAATGTCAGGACGCGTAAAGGGAGGCAAAGGTCTAGGCAA
GGGTGGGGCTAAGCGCCACCGCAAGGTTTTTCGTGATAATATCCAGGGTA
TCACAAAGCCCGCGATCCGCCGTCTGGCTCGCCGTGGCGGTGTGAAGCGC
ATCTCCGGTCTCATCTACGAAGAGACCCGCGGAGTACTCAAGGTGTTCTT
GGAGAACGTAATCCGCGATTCGGTGACGTACACAGAGCACGCCCGTCACA
AGACCGTTACGGCCATGGATGTGATTTACGCCCTCAAGCGCCAGGGTCGT
ACCCTCTATGGTTTTGGTGGCTAA
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