mRNA_H-elongata_contig1700.4339.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig1700.4339.1
Unique NamemRNA_H-elongata_contig1700.4339.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig1700.4339.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig1700contigH-elongata_contig1700:5953..10022 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons5
Model size1912
Cds size1089
Stop1
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig1700.4339.1prot_H-elongata_contig1700.4339.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig1700 5953..9200 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929991.4348013-CDS-H-elongata_contig1700:5952..60211622929991.4348013-CDS-H-elongata_contig1700:5952..6021Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig1700 5953..6021 +
1691679237.5392225-CDS-H-elongata_contig1700:5952..60211691679237.5392225-CDS-H-elongata_contig1700:5952..6021Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig1700 5953..6021 +
1622929991.4487932-CDS-H-elongata_contig1700:6519..66401622929991.4487932-CDS-H-elongata_contig1700:6519..6640Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig1700 6520..6640 +
1691679237.5471022-CDS-H-elongata_contig1700:6519..66401691679237.5471022-CDS-H-elongata_contig1700:6519..6640Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig1700 6520..6640 +
1622929991.4646127-CDS-H-elongata_contig1700:7195..78001622929991.4646127-CDS-H-elongata_contig1700:7195..7800Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig1700 7196..7800 +
1691679237.5660446-CDS-H-elongata_contig1700:7195..78001691679237.5660446-CDS-H-elongata_contig1700:7195..7800Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig1700 7196..7800 +
1622929991.4778993-CDS-H-elongata_contig1700:8273..83941622929991.4778993-CDS-H-elongata_contig1700:8273..8394Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig1700 8274..8394 +
1691679237.5765064-CDS-H-elongata_contig1700:8273..83941691679237.5765064-CDS-H-elongata_contig1700:8273..8394Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig1700 8274..8394 +
1622929991.4928-CDS-H-elongata_contig1700:9027..92001622929991.4928-CDS-H-elongata_contig1700:9027..9200Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig1700 9028..9200 +
1691679237.587349-CDS-H-elongata_contig1700:9027..92001691679237.587349-CDS-H-elongata_contig1700:9027..9200Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig1700 9028..9200 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929991.507876-UTR-H-elongata_contig1700:9200..100221622929991.507876-UTR-H-elongata_contig1700:9200..10022Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig1700 9201..10022 +
1691679237.6003885-UTR-H-elongata_contig1700:9200..100221691679237.6003885-UTR-H-elongata_contig1700:9200..10022Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig1700 9201..10022 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig1700.4339.1

>prot_H-elongata_contig1700.4339.1 ID=prot_H-elongata_contig1700.4339.1|Name=mRNA_H-elongata_contig1700.4339.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=363bp
TGSVEYGQNFIIAYDAGEDSDTDIKWYVGYLVSSTTTTVESELFCVSEEQ
ATNIHPVEVTSWYCVTNSVDEAETVTTEEFSISCGCSTATTVTSVTDTGT
QTSTDTEILTTTETGTLPATDTSTLITTDTDALTTTDLVTGTTTDTSTLT
TTSSGTLTTIETDSLTTTGTEALTTTNTGTQTTADIGTPTTSDTGTLITT
DTAFASCEEGESFTVVSNLVPEVGGCYFDTGSLNEDEPIYSETGSTENGQ
NAVIAIDVGVDGDTDIKWSIAYFVSSTTATVEIEVFCASEEQATNIHPVE
VTSWYCYTNSLGETESGTIIELSISCGCSEEQADTGRVSFAISTLVVVGV
GLVTLALLIVGL*
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mRNA from alignment at H-elongata_contig1700:5953..10022+

Legend: polypeptideCDSUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig1700.4339.1 ID=mRNA_H-elongata_contig1700.4339.1|Name=mRNA_H-elongata_contig1700.4339.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=4070bp|location=Sequence derived from alignment at H-elongata_contig1700:5953..10022+ (Himanthalia elongata Himel1 dioecious)
ACGGGCTCTGTCGAGTACGGACAAAACTTTATCATCGCCTATGATGCTGG
AGAGGATAGCGATACAGATGTGAGTACTAATTTAGCGCACGCTCATTTCA
ACACGCGTAAGTACCCGTACAGCACCCAACACTGACCTAGCTGATACGAC
AAGCCGGATGGTATTTAAAATATATGTATTCCGTGCCAAATATCTGCTTA
CAAAACATTCATATCGTGGTCTGGAGCAAACGAAAGTATGGACCCCTGGT
GTTTCGTTCTATATATCTTTATCGGTTCTCACCGTATTACACAAAGTGTT
CCTCTAACAGGTTCGTTTGGAAATATATATATATATATATATGTTGGCAT
GTAGAAAGATATGCATCAAAACCTTAAAATATAGTACCTTACGCGCGCGG
TGGACCATACGTATCTCCAGGGTTTTAAACCACTCCTCTCGGATAAATAA
GGAAACTGATAAAAATTATCGCTCTCAATCACATACTGTTAAGAATCACA
AACGTGGAAGGCGTATCCATCCCTTACCGACACCTCAAGATGCTTTACCT
AATGTCCCTGCGGCCAGATAAAATGGTATGTCGGATACTTGGTTTCGAGT
ACCACTACAACTGTCGAATCCGAACTTTTCTGCGTCTCCGAGGAACAGGC
GACAAACATTCATCCGGTGGAAGTGACGTCTTGGTACTGTGAGTAGCTTT
GATGAGTTCTTGCCATAAGTCGATGTTTCGAATTCTTGAATGGTTGCATG
TGGTACATTGAGACAGCACTTGCATACACCAAGCACTGGGGACAATCCTT
TATGGCTCATAGCTACCGAGTAAGATCGCTATCGATTTCGACTGCTAATA
TGCGTCGTGATATCAAAGAGGCAATCACCCGGCTACTAAGGCAAATATGA
CAACTACTGTAGCATCTGACAATACATGTTGCTTTTGATTTTCCCAATAC
GGTATTCCTTATCGGCCGGCACTCGCCGTTCGTTTTTTTCCGAGTATTCC
GAGTATTTTTCTGTAAGGTACAAGCATTTACGAACTAGCCTACGTATCTG
GTCGGATTCTAAACGTACGCCCGACCGCGTACATCTTTGGCGTTAGTTCA
TACTACCGGCTGCAGTTTTTACTTTTTGCGTAGCGGAAGCAACTTCTATT
TGCTAATAGTGCCGACCTATGGGGTGCTGTCTATTCCCCTTGCCTCATTT
CTCCGAACTATCTCGCTGTGCTCATGTGTACCGTCGTACCAAGGCGTCAC
GAATTCCGTGGACGAAGCAGAGACCGTCACCACCGAAGAATTTTCGATCT
CGTGCGGCTGCTCAACCGCGACTACTGTTACCAGCGTCACCGACACCGGC
ACTCAAACTTCTACCGACACGGAAATTCTAACTACAACCGAAACCGGTAC
ACTACCTGCTACCGACACTAGCACTCTAATTACCACCGACACCGACGCAC
TAACTACCACCGATCTTGTTACAGGCACTACCACCGACACTAGCACTCTA
ACAACAACCAGCTCCGGTACCCTAACTACCATCGAGACCGACAGTCTAAC
TACCACCGGCACCGAGGCTCTAACTACAACCAACACTGGTACACAAACTA
CAGCCGACATCGGCACTCCAACTACCTCTGACACCGGTACTCTAATTACC
ACCGACACCGCCTTTGCTAGCTGTGAAGAGGGGGAATCGTTTACTGTTGT
GTCCAACTTGGTGCCAGAAGTGGGAGGGTGCTACTTTGACACTGGAAGTT
TAAATGAAGATGAGCCTATTTATTCCGAGACGGGCTCGACCGAGAACGGA
CAAAACGCTGTCATCGCCATTGATGTTGGAGTGGATGGCGATACAGATGT
GAGTACTAATTCAGCGCGCGCTCATTTCAACGCATGGCATTACCCGTAAA
GCACCCAAGACTAACCTAGCTGATTATAATAAGCCGGGTCGTGTATTTAA
TATACGTCCTGGGCATATATATATATCGCGGTCAGGAGCGGAGGAAAGTA
TAGATGCCGAGCGCTTCATTTTATACCTCTCTATCGTTTCTCACCATATT
TTAACAGGTCCGTTTGGAAATATACATAGTTGGTGTGTAAAATATGTATG
CATCAAAACCTTAGTCTATAGTACCCGATACCAGCCACTTACGCGCGTGG
TAAGCCATACGCCTCTTCAGGGTTTTAAGCCACTCTTCTTCTCGGACAAA
GAAAAAAATTGATGAAGATTATCACTCTCAACAAAATACTGTAAAAACAA
ACCACAAACGTGGAAGGCGTGTCCTTCTCTTACCCACACCTTGATGTTTT
ACCTATTGTTCCTGTGGCCAGATAAAATGGTCTATTGCATACTTTGTTTC
AAGTACCACTGCAACTGTCGAAATCGAGGTTTTCTGCGCCTCCGAGGAAC
AGGCGACAAACATTCATCCGGTGGAAGTGACGTCTTGGTACTGTGAGTAG
CTCTGATGAGTTCTCGCCATGAGTCTACATTTTGAGTTCCGCAATTTGTA
CGCAACGTGTCTCTGATTATCGTCATTTCTACGTCCTAGGTAGCCTCCAT
CGTTTGTTTTTCACATGCCCTCCTGTGAGTAATCTTAAATGTGGTACGTA
GAAACAGCACTTGCTTGCAACGGCTCATAGCTATCAAACGGCACCGCCAT
CGATTTCGACTGCTAATGTTGACCGTGATATAGAAGAGACAACCATCCGG
ATACTATGTCAAATATGACAACTACTGTTGTTAGCATCTGACAATACATC
TTGCTTTCGCTTTTTCCATTATGGTATGTATGTATTATCATTTCTTATAG
GCTGGCACTCGCCGTTTGTTTTTTCCAAGTCTTTTTTCTGCAAGGTAGAA
GCACTTACGAACTAGTCTACGTGTACATGGATGGATTGTAAACGTACGCC
CAACCCGCGACCTAGATCTTTGGCCTTCACTTGTTCTCTCGGCTGCATAT
ATTTTATTCGCGTGGTGGAAACAACTCCTATTTGCTAATAGTGCCCACCT
ATGGGTTGCTGTTCTTTTTCCCTGTCTCTTTTCTCCCAACTACCTCGCTA
TGCTCATCTGCACCGTCGTACCAAGGCTACACGAATTCCTTGGGCGAAAC
AGAGTCCGGCACGATCATAGAATTGTCGATCTCATGCGGCTGCTCGGAAG
AACAAGCGGACACGGGTCGTGTGTCTTTCGCCATTTCGACTTTGGTGGTC
GTGGGAGTAGGCCTAGTGACCTTAGCCCTCCTCATCGTCGGACTGTGATC
TCCATTGCAGATCGAAACATGACTGCCGACGACCTGAAACAATGCGCACC
AATAAAATCAACCCAATCGGTGCACTATTATAAGCTGCAGGGCGTGGAAA
TTATTTTAGATGTTAAAAAAGTTACGTTCGTGGCTGAATCTCGGTCTTTA
GGGACGCCTTCATGGACTGTCCAGCTCGGGGGAGACTCTATCCTTGCCAC
CGTAGAAATTTCATGGACTATCGGGTATTCGTAGTTTCGGTTACCGCATA
CTTCCCTTTCGTTTCGGCATCAGACGGGGGAGCGATATCGACGCGCAACA
TACTTTGTCATTCGGAGTGGAATATGGGGAGTGGGGGGGGGGGCGTTGGG
AAAGCTCCAAAGCGACACAATTAATTTTGCTTGGCGTAGTCATCTCCTTG
AACATAAATTGTATGAAATAATCTCATTTGGAGTTAGAAATGGATCGGTG
GTTATGCAGACGTCAAACCTGCAGCATCCAATAAGAGAGAACTTGAAATA
TATTTGATGCGTGCTGGCCCTGGCCGTTAGCTTGTAAACCAGCACAGCAG
TTGTAAAAAAGTTTATAATTCGAATCTAGGCGAACAGAATGGTTTCACGG
AGAGCGTAAGAATGAATGTGAACAAGCAAAGTTCAGTCAATTGTCTGACA
AAGGTTAGGAATGTTGAAGCTACAGCGAAATATGAACTGGACCGTTAGGG
CTACAGACGGAATGCGAATCGTTGCACTGCGTACGCTTCGTACCCTTGCA
CATTGAAAGGCACCATCAGTTAGAAAATAAATTCGAGAAGAATATCAAAA
TATGTATACAATTGTTCTGG
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Coding sequence (CDS) from alignment at H-elongata_contig1700:5953..10022+

>mRNA_H-elongata_contig1700.4339.1 ID=mRNA_H-elongata_contig1700.4339.1|Name=mRNA_H-elongata_contig1700.4339.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=2178bp|location=Sequence derived from alignment at H-elongata_contig1700:5953..10022+ (Himanthalia elongata Himel1 dioecious)
ACGGGCTCTGTCGAGTACGGACAAAACTTTATCATCGCCTATGATGCTGG
AGAGGATAGCGATACAGATACGGGCTCTGTCGAGTACGGACAAAACTTTA
TCATCGCCTATGATGCTGGAGAGGATAGCGATACAGATATAAAATGGTAT
GTCGGATACTTGGTTTCGAGTACCACTACAACTGTCGAATCCGAACTTTT
CTGCGTCTCCGAGGAACAGGCGACAAACATTCATCCGGTGGAAGTGACGT
CTTGGTACTATAAAATGGTATGTCGGATACTTGGTTTCGAGTACCACTAC
AACTGTCGAATCCGAACTTTTCTGCGTCTCCGAGGAACAGGCGACAAACA
TTCATCCGGTGGAAGTGACGTCTTGGTACTGCGTCACGAATTCCGTGGAC
GAAGCAGAGACCGTCACCACCGAAGAATTTTCGATCTCGTGCGGCTGCTC
AACCGCGACTACTGTTACCAGCGTCACCGACACCGGCACTCAAACTTCTA
CCGACACGGAAATTCTAACTACAACCGAAACCGGTACACTACCTGCTACC
GACACTAGCACTCTAATTACCACCGACACCGACGCACTAACTACCACCGA
TCTTGTTACAGGCACTACCACCGACACTAGCACTCTAACAACAACCAGCT
CCGGTACCCTAACTACCATCGAGACCGACAGTCTAACTACCACCGGCACC
GAGGCTCTAACTACAACCAACACTGGTACACAAACTACAGCCGACATCGG
CACTCCAACTACCTCTGACACCGGTACTCTAATTACCACCGACACCGCCT
TTGCTAGCTGTGAAGAGGGGGAATCGTTTACTGTTGTGTCCAACTTGGTG
CCAGAAGTGGGAGGGTGCTACTTTGACACTGGAAGTTTAAATGAAGATGA
GCCTATTTATTCCGAGACGGGCTCGACCGAGAACGGACAAAACGCTGTCA
TCGCCATTGATGTTGGAGTGGATGGCGATACAGATGCGTCACGAATTCCG
TGGACGAAGCAGAGACCGTCACCACCGAAGAATTTTCGATCTCGTGCGGC
TGCTCAACCGCGACTACTGTTACCAGCGTCACCGACACCGGCACTCAAAC
TTCTACCGACACGGAAATTCTAACTACAACCGAAACCGGTACACTACCTG
CTACCGACACTAGCACTCTAATTACCACCGACACCGACGCACTAACTACC
ACCGATCTTGTTACAGGCACTACCACCGACACTAGCACTCTAACAACAAC
CAGCTCCGGTACCCTAACTACCATCGAGACCGACAGTCTAACTACCACCG
GCACCGAGGCTCTAACTACAACCAACACTGGTACACAAACTACAGCCGAC
ATCGGCACTCCAACTACCTCTGACACCGGTACTCTAATTACCACCGACAC
CGCCTTTGCTAGCTGTGAAGAGGGGGAATCGTTTACTGTTGTGTCCAACT
TGGTGCCAGAAGTGGGAGGGTGCTACTTTGACACTGGAAGTTTAAATGAA
GATGAGCCTATTTATTCCGAGACGGGCTCGACCGAGAACGGACAAAACGC
TGTCATCGCCATTGATGTTGGAGTGGATGGCGATACAGATATAAAATGGT
CTATTGCATACTTTGTTTCAAGTACCACTGCAACTGTCGAAATCGAGGTT
TTCTGCGCCTCCGAGGAACAGGCGACAAACATTCATCCGGTGGAAGTGAC
GTCTTGGTACTATAAAATGGTCTATTGCATACTTTGTTTCAAGTACCACT
GCAACTGTCGAAATCGAGGTTTTCTGCGCCTCCGAGGAACAGGCGACAAA
CATTCATCCGGTGGAAGTGACGTCTTGGTACTGCTACACGAATTCCTTGG
GCGAAACAGAGTCCGGCACGATCATAGAATTGTCGATCTCATGCGGCTGC
TCGGAAGAACAAGCGGACACGGGTCGTGTGTCTTTCGCCATTTCGACTTT
GGTGGTCGTGGGAGTAGGCCTAGTGACCTTAGCCCTCCTCATCGTCGGAC
TGTGAGCTACACGAATTCCTTGGGCGAAACAGAGTCCGGCACGATCATAG
AATTGTCGATCTCATGCGGCTGCTCGGAAGAACAAGCGGACACGGGTCGT
GTGTCTTTCGCCATTTCGACTTTGGTGGTCGTGGGAGTAGGCCTAGTGAC
CTTAGCCCTCCTCATCGTCGGACTGTGA
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