mRNA_H-elongata_contig169171.4298.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig169171.4298.1
Unique NamemRNA_H-elongata_contig169171.4298.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
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BLAST of mRNA_H-elongata_contig169171.4298.1 vs. uniprot
Match: D8LD76_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LD76_ECTSI)

HSP 1 Score: 107 bits (268), Expect = 3.740e-26
Identity = 47/68 (69.12%), Postives = 58/68 (85.29%), Query Frame = 1 
Query:    1 ATPCQLEGRVEEWEPPKLADLRSAYRWKDEKKASMRKIRGFNKGGNELRELIHSEVVRLDLLRHDIFC 204
            A PC+LEGRVE W+PP  ADL+S+YRW DE+KASM +IR F +GG  LRELIH+EV+RLD+LRHD+FC
Sbjct:  347 AVPCRLEGRVENWKPPASADLKSSYRWNDEQKASMERIRRFTRGGTALRELIHAEVIRLDVLRHDLFC 414
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BLAST of mRNA_H-elongata_contig169171.4298.1 vs. uniprot
Match: A0A8J2STD5_9STRA (Hypothetical protein n=1 Tax=Pelagomonas calceolata TaxID=35677 RepID=A0A8J2STD5_9STRA)

HSP 1 Score: 57.4 bits (137), Expect = 6.170e-8
Identity = 28/59 (47.46%), Postives = 35/59 (59.32%), Query Frame = 1 
Query:   28 VEEWEPPKLADLRSAYRWKDEKKASMRKIRGFNKGGNELRELIHSEVVRLDLLRHDIFC 204
            V  WEPP+ A L    +WK  K  S   IRGF +GG ELR  +  +V RL L RH++FC
Sbjct:  466 VARWEPPETARLEQIQQWKKLKAQSDAAIRGFARGGKELRAFVSDQVDRLRLARHNLFC 524
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig169171.4298.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D8LD76_ECTSI3.740e-2669.12Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A8J2STD5_9STRA6.170e-847.46Hypothetical protein n=1 Tax=Pelagomonas calceolat... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig169171contigH-elongata_contig169171:170..805 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Ec32 ortholog descriptionhypothetical protein
Ec32 orthologEc-05_001490.1
Hectar predicted targeting categoryother localisation
Exons2
Model size210
Cds size210
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929987.6809914-CDS-H-elongata_contig169171:169..2831622929987.6809914-CDS-H-elongata_contig169171:169..283Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig169171 170..283 -
1691679235.9448113-CDS-H-elongata_contig169171:169..2831691679235.9448113-CDS-H-elongata_contig169171:169..283Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig169171 170..283 -
1622929987.6985352-CDS-H-elongata_contig169171:709..8051622929987.6985352-CDS-H-elongata_contig169171:709..805Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig169171 710..805 -
1691679235.9538214-CDS-H-elongata_contig169171:709..8051691679235.9538214-CDS-H-elongata_contig169171:709..805Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig169171 710..805 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig169171.4298.1prot_H-elongata_contig169171.4298.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig169171 170..805 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig169171.4298.1

>prot_H-elongata_contig169171.4298.1 ID=prot_H-elongata_contig169171.4298.1|Name=mRNA_H-elongata_contig169171.4298.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=70bp
ATPCQLEGRVEEWEPPKLADLRSAYRWKDEKKASMRKIRGFNKGGNELRE
LIHSEVVRLDLLRHDIFCP*
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mRNA from alignment at H-elongata_contig169171:170..805-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig169171.4298.1 ID=mRNA_H-elongata_contig169171.4298.1|Name=mRNA_H-elongata_contig169171.4298.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=636bp|location=Sequence derived from alignment at H-elongata_contig169171:170..805- (Himanthalia elongata Himel1 dioecious)
GCGACGCCTTGCCAGCTGGAGGGAAGGGTGGAAGAGTGGGAGCCTCCAAA
ACTGGCAGATCTTAGGTCTGCGTATCGCTGGAAGGACGAGAAGAAGGTAA
TGGTGTGACTCGAGATGATCGAAGTGACAGCAATTCACTACGGACACTCC
AGCCTCCACCACACCCTGCCCCCAAATCCTAGAATATATCAATATATGGG
TTGTTCTTTAGCAATGGAAGAAGTGTTTACCCAACGGCGAAAATATCGAA
ACCTGAGAGCGCTGTTCTGAACGCTGTGATTCAATTACGCTAATTGAGTT
CAACTACTGCTGCCGCGTCCTGCTTTGGGCTGCGCGAGTGGTCTTTCGGA
ATATCCGCTACTGGTGATGACCGCGAAGACATTCCTTTGGCGTTCCTACG
CATCTAAAAAACTTGCTTTGGTATATCGCTCCGTCCCAGTACTGTTGGGA
TGTGTGATCTATGTCCGTTATGATACGGAAAAAGTGTTTAAACATTGTAC
CCCCCACCCCCTCTTAAAATAGGCGAGCATGAGGAAGATTCGTGGCTTCA
ACAAGGGGGGCAACGAGCTCCGCGAATTGATCCATTCTGAGGTCGTCCGT
CTCGACCTTTTACGGCACGATATATTTTGTCCATGA
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Coding sequence (CDS) from alignment at H-elongata_contig169171:170..805-

>mRNA_H-elongata_contig169171.4298.1 ID=mRNA_H-elongata_contig169171.4298.1|Name=mRNA_H-elongata_contig169171.4298.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=420bp|location=Sequence derived from alignment at H-elongata_contig169171:170..805- (Himanthalia elongata Himel1 dioecious)
GCGACGCCTTGCCAGCTGGAGGGAAGGGTGGAAGAGTGGGAGCCTCCAAA
ACTGGCAGATCTTAGGTCTGCGTATCGCTGGAAGGACGAGAAGAAGGCGA
CGCCTTGCCAGCTGGAGGGAAGGGTGGAAGAGTGGGAGCCTCCAAAACTG
GCAGATCTTAGGTCTGCGTATCGCTGGAAGGACGAGAAGAAGGCGAGCAT
GAGGAAGATTCGTGGCTTCAACAAGGGGGGCAACGAGCTCCGCGAATTGA
TCCATTCTGAGGTCGTCCGTCTCGACCTTTTACGGCACGATATATTTTGT
CCATGAGCGAGCATGAGGAAGATTCGTGGCTTCAACAAGGGGGGCAACGA
GCTCCGCGAATTGATCCATTCTGAGGTCGTCCGTCTCGACCTTTTACGGC
ACGATATATTTTGTCCATGA
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