mRNA_H-elongata_contig168082.4248.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig168082.4248.1
Unique NamemRNA_H-elongata_contig168082.4248.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
BLAST of mRNA_H-elongata_contig168082.4248.1 vs. uniprot
Match: A0A6H5L8H5_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L8H5_9PHAE)

HSP 1 Score: 91.7 bits (226), Expect = 5.210e-20
Identity = 42/67 (62.69%), Postives = 54/67 (80.60%), Query Frame = 1
Query:    1 DTIIFVLYPAKREPTTRDGGYDSALDGLIIRDMNLINAGGECIRLRYFVTFAEIYDNDILNCGIYDF 201
            D +I+ +  A REPT RDGGY SA+DGL+IR+M + NAGGECIRLR  VT+AE+Y N I++CGIYD+
Sbjct:  138 DVLIYAV--ANREPTERDGGYVSAIDGLVIRNMAVTNAGGECIRLRDHVTYAEVYSNYIIDCGIYDY 202          
BLAST of mRNA_H-elongata_contig168082.4248.1 vs. uniprot
Match: A0A6H5JYT7_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JYT7_9PHAE)

HSP 1 Score: 90.9 bits (224), Expect = 9.730e-20
Identity = 42/67 (62.69%), Postives = 53/67 (79.10%), Query Frame = 1
Query:    1 DTIIFVLYPAKREPTTRDGGYDSALDGLIIRDMNLINAGGECIRLRYFVTFAEIYDNDILNCGIYDF 201
            D +I+ +  A REPT RDGGY SA+DGL+IR+M + NAGGECIRLR  VT+AE+Y N I +CGI+DF
Sbjct:  137 DVLIYAV--ANREPTERDGGYVSAIDGLVIRNMAVTNAGGECIRLRDHVTYAEVYSNHITDCGIFDF 201          
BLAST of mRNA_H-elongata_contig168082.4248.1 vs. uniprot
Match: A0A6H5L3G3_9PHAE (Beta_helix domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L3G3_9PHAE)

HSP 1 Score: 87.0 bits (214), Expect = 1.710e-18
Identity = 42/67 (62.69%), Postives = 51/67 (76.12%), Query Frame = 1
Query:    1 DTIIFVLYPAKREPTTRDGGYDSALDGLIIRDMNLINAGGECIRLRYFVTFAEIYDNDILNCGIYDF 201
            D +I+ +  A REPT R GGY SA+DGL+IR+M + NAGGECIRLR  VT AE+Y N I +CGIYDF
Sbjct:  132 DVLIYAV--ANREPTERAGGYISAIDGLVIRNMAVTNAGGECIRLRDHVTNAEVYSNHITDCGIYDF 196          
BLAST of mRNA_H-elongata_contig168082.4248.1 vs. uniprot
Match: UPI00036AEC55 (right-handed parallel beta-helix repeat-containing protein n=1 Tax=Hahella ganghwensis TaxID=286420 RepID=UPI00036AEC55)

HSP 1 Score: 65.5 bits (158), Expect = 7.650e-11
Identity = 27/41 (65.85%), Postives = 34/41 (82.93%), Query Frame = 1
Query:   79 GLIIRDMNLINAGGECIRLRYFVTFAEIYDNDILNCGIYDF 201
            G ++R M+L NAGGEC+RLRY+VT AEI+DN   NCG+YDF
Sbjct:  158 GFVMRAMSLKNAGGECVRLRYYVTEAEIFDNTFYNCGVYDF 198          
BLAST of mRNA_H-elongata_contig168082.4248.1 vs. uniprot
Match: D7FIS4_ECTSI (Putative nosD copper-binding protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FIS4_ECTSI)

HSP 1 Score: 65.1 bits (157), Expect = 1.140e-10
Identity = 32/57 (56.14%), Postives = 42/57 (73.68%), Query Frame = 1
Query:    1 DTIIFVLYPAKREPTTRDGGYDSALDGLIIRDMNLINAGGECIRLRYFVTFAEIYDN 171
            D +I+ +  A REPT RDGGY S LDGL+IR+M L NAGGECIRLR   T ++ +++
Sbjct:  115 DILIYAI--ADREPTERDGGYVSTLDGLVIRNMKLANAGGECIRLRDVGTSSDQWED 169          
BLAST of mRNA_H-elongata_contig168082.4248.1 vs. uniprot
Match: D7G3L7_ECTSI (FirrV-1-B30 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G3L7_ECTSI)

HSP 1 Score: 64.7 bits (156), Expect = 1.460e-10
Identity = 23/47 (48.94%), Postives = 40/47 (85.11%), Query Frame = 1
Query:   61 YDSALDGLIIRDMNLINAGGECIRLRYFVTFAEIYDNDILNCGIYDF 201
            + S+++GL++ +M++ N GGEC+R+RYFVT++++Y+N I NCG +DF
Sbjct:  149 FRSSINGLVLSNMDINNCGGECVRMRYFVTYSQVYNNRITNCGTHDF 195          
BLAST of mRNA_H-elongata_contig168082.4248.1 vs. uniprot
Match: A0A4R0K2W0_9ACTN (DUF1565 domain-containing protein n=2 Tax=Kribbella TaxID=182639 RepID=A0A4R0K2W0_9ACTN)

HSP 1 Score: 64.3 bits (155), Expect = 1.910e-10
Identity = 33/67 (49.25%), Postives = 43/67 (64.18%), Query Frame = 1
Query:    1 DTIIFVLYPAKREPTTRDGGYDSALDGLIIRDMNLINAGGECIRLRYFVTFAEIYDNDILNCGIYDF 201
            D +I+V+       T  DG     + GL IRDM L NAGGEC+RLRY +T A+++DN I  CG+YDF
Sbjct:  128 DKLIYVM-----STTAGDG-----VGGLTIRDMTLKNAGGECMRLRYLITNADVHDNTIGPCGVYDF 184          
BLAST of mRNA_H-elongata_contig168082.4248.1 vs. uniprot
Match: A0A6H5JFC7_9PHAE (PPIase cyclophilin-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JFC7_9PHAE)

HSP 1 Score: 63.5 bits (153), Expect = 4.040e-10
Identity = 22/47 (46.81%), Postives = 40/47 (85.11%), Query Frame = 1
Query:   61 YDSALDGLIIRDMNLINAGGECIRLRYFVTFAEIYDNDILNCGIYDF 201
            + S+++GL++ +M++ N GGEC+R+RYFVT++++Y+N I NCG +D+
Sbjct:  453 FRSSINGLVLSNMDINNCGGECVRMRYFVTYSQVYNNRITNCGTHDY 499          
BLAST of mRNA_H-elongata_contig168082.4248.1 vs. uniprot
Match: D8LPI3_ECTSI (EsV-1-164 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LPI3_ECTSI)

HSP 1 Score: 63.2 bits (152), Expect = 5.500e-10
Identity = 27/47 (57.45%), Postives = 35/47 (74.47%), Query Frame = 1
Query:   61 YDSALDGLIIRDMNLINAGGECIRLRYFVTFAEIYDNDILNCGIYDF 201
            + SA+DGLII +M +IN GGEC R RYFVT  E + + + NCG+YDF
Sbjct:  136 FRSAIDGLIISNMKIINFGGECTRFRYFVTNLEFFGSHLENCGVYDF 182          
BLAST of mRNA_H-elongata_contig168082.4248.1 vs. uniprot
Match: UPI00179769F3 (Uncharacterized protein n=1 Tax=Hamadaea sp. TaxID=2024425 RepID=UPI00179769F3)

HSP 1 Score: 62.8 bits (151), Expect = 6.800e-10
Identity = 31/66 (46.97%), Postives = 40/66 (60.61%), Query Frame = 1
Query:   37 EPTTRDGGYDSAL-----------DGLIIRDMNLINAGGECIRLRYFVTFAEIYDNDILNCGIYDF 201
            +P T DG  D  L           DGL + DM L NAGGEC+RLRY +T AE+++N I  CG++DF
Sbjct:  119 DPGTADGYRDKLLYVMSTTPGDGVDGLKVHDMTLANAGGECVRLRYLITHAEVWNNRIGPCGVHDF 184          
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig168082.4248.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5L8H5_9PHAE5.210e-2062.69Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JYT7_9PHAE9.730e-2062.69Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5L3G3_9PHAE1.710e-1862.69Beta_helix domain-containing protein n=1 Tax=Ectoc... [more]
UPI00036AEC557.650e-1165.85right-handed parallel beta-helix repeat-containing... [more]
D7FIS4_ECTSI1.140e-1056.14Putative nosD copper-binding protein n=1 Tax=Ectoc... [more]
D7G3L7_ECTSI1.460e-1048.94FirrV-1-B30 n=1 Tax=Ectocarpus siliculosus TaxID=2... [more]
A0A4R0K2W0_9ACTN1.910e-1049.25DUF1565 domain-containing protein n=2 Tax=Kribbell... [more]
A0A6H5JFC7_9PHAE4.040e-1046.81PPIase cyclophilin-type domain-containing protein ... [more]
D8LPI3_ECTSI5.500e-1057.45EsV-1-164 n=1 Tax=Ectocarpus siliculosus TaxID=288... [more]
UPI00179769F36.800e-1046.97Uncharacterized protein n=1 Tax=Hamadaea sp. TaxID... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig168082contigH-elongata_contig168082:92..790 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeBacteria
Seed ortholog score66.2
Seed ortholog evalue6.7e-09
Seed eggNOG ortholog1121935.AQXX01000136_gene4114
EggNOG free text desc.Parallel beta-helix repeats
EggNOG OGs1NHJ7@1224,1SHNB@1236,COG3420@1,COG3420@2
COG Functional cat.P
Best tax levelGammaproteobacteria
Best eggNOG OGNA|NA|NA
Hectar predicted targeting categoryother localisation
Exons2
Model size207
Cds size207
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929982.7251682-CDS-H-elongata_contig168082:91..1591622929982.7251682-CDS-H-elongata_contig168082:91..159Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig168082 92..159 -
1691679234.205413-CDS-H-elongata_contig168082:91..1591691679234.205413-CDS-H-elongata_contig168082:91..159Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig168082 92..159 -
1622929982.7438312-CDS-H-elongata_contig168082:651..7901622929982.7438312-CDS-H-elongata_contig168082:651..790Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig168082 652..790 -
1691679234.2279623-CDS-H-elongata_contig168082:651..7901691679234.2279623-CDS-H-elongata_contig168082:651..790Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig168082 652..790 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig168082.4248.1prot_H-elongata_contig168082.4248.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig168082 92..790 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig168082.4248.1

>prot_H-elongata_contig168082.4248.1 ID=prot_H-elongata_contig168082.4248.1|Name=mRNA_H-elongata_contig168082.4248.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=69bp
DTIIFVLYPAKREPTTRDGGYDSALDGLIIRDMNLINAGGECIRLRYFVT
FAEIYDNDILNCGIYDFFY
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mRNA from alignment at H-elongata_contig168082:92..790-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig168082.4248.1 ID=mRNA_H-elongata_contig168082.4248.1|Name=mRNA_H-elongata_contig168082.4248.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=699bp|location=Sequence derived from alignment at H-elongata_contig168082:92..790- (Himanthalia elongata Himel1 dioecious)
GATACTATTATTTTTGTTTTGTACCCAGCCAAGCGCGAGCCTACTACCCG TGACGGGGGCTACGACTCGGCCCTTGACGGCCTCATCATTCGCGACATGA ACCTTATCAACGCCGGAGGGGAGTGCATTCGCCTTCGCTGTGAGTAAGAT GCCATAAATCGAGCCTTCGAAACACCCGAGCCCTCTGTCAATGATAATTA TTGAATGGCTGTAGTTTAGTACAGGGTGAGATCTGGATAAAACATATTCC GAAGTGTTTCATTATTTCTTGACGATGATATAACTGGGCGTCTCTCAGAA CAGGGCATCTACCTCTTCACTCACTCGGTCCAAGAAGCCTTTGTAAAACG TCTTGGTAAAACATGTTGCTACTATAATTCGACCCTACGAATGCGTTTCG TGCCTTGCCAAAACAATGAACATATATAGAATATTGGCCTGTCTTTCGTC GAAAATCATTTCACAATGGCAGTGGGGTGGTAGTATTATCTTATGGTTTT GTAACCCATTCCGAGTATCGCTAGGTTTCGATTTTCGTGTACTTGGCCCG GTCTACCCTTTTCATATATGTACTTTTCCCTTCTCGCCCTGAACCGGCAT CATCTTGCCTTCTCTCCACGTCCGTCTCCAGACTTCGTTACGTTTGCGGA GATATACGACAACGATATACTCAATTGCGGCATTTACGACTTTTTCTAC
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Coding sequence (CDS) from alignment at H-elongata_contig168082:92..790-

>mRNA_H-elongata_contig168082.4248.1 ID=mRNA_H-elongata_contig168082.4248.1|Name=mRNA_H-elongata_contig168082.4248.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=414bp|location=Sequence derived from alignment at H-elongata_contig168082:92..790- (Himanthalia elongata Himel1 dioecious)
GATACTATTATTTTTGTTTTGTACCCAGCCAAGCGCGAGCCTACTACCCG
TGACGGGGGCTACGACTCGGCCCTTGACGGCCTCATCATTCGCGACATGA
ACCTTATCAACGCCGGAGGGGAGTGCATTCGCCTTCGCTGATACTATTAT
TTTTGTTTTGTACCCAGCCAAGCGCGAGCCTACTACCCGTGACGGGGGCT
ACGACTCGGCCCTTGACGGCCTCATCATTCGCGACATGAACCTTATCAAC
GCCGGAGGGGAGTGCATTCGCCTTCGCTACTTCGTTACGTTTGCGGAGAT
ATACGACAACGATATACTCAATTGCGGCATTTACGACTTTTTCTACACTT
CGTTACGTTTGCGGAGATATACGACAACGATATACTCAATTGCGGCATTT
ACGACTTTTTCTAC
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