mRNA_H-elongata_contig168049.4244.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	mRNA_H-elongata_contig168049.4244.1
Unique Name	mRNA_H-elongata_contig168049.4244.1
Type	mRNA
Organism	Himanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)

Homology

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BLAST of mRNA_H-elongata_contig168049.4244.1 vs. uniprot
Match: A0A835YR11_9STRA (MEMO1 family (Fragment) n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YR11_9STRA)

HSP 1 Score: 87.0 bits (214), Expect = 5.480e-19
Identity = 35/47 (74.47%), Postives = 40/47 (85.11%), Query Frame = 1

Query:    4 LLLQFLEDPRNFFIVSSDFCHWGSRFRYQPRDPSHGAIHEHIRWLDH 144
            LL  +L DP NFFIVSSDFCHWG+RFRYQP D + GA+HE+IRWLDH
Sbjct:  233 LLAPYLRDPANFFIVSSDFCHWGARFRYQPHDAARGAVHEYIRWLDH 279

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BLAST of mRNA_H-elongata_contig168049.4244.1 vs. uniprot
Match: D7G5V7_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7G5V7_ECTSI)

HSP 1 Score: 84.0 bits (206), Expect = 7.160e-18
Identity = 34/49 (69.39%), Postives = 40/49 (81.63%), Query Frame = 1

Query:    1 RLLLQFLEDPRNFFIVSSDFCHWGSRFRYQPRDPSHGAIHEHIRWLDHK 147
            R+L  +LED  NFFI+S+DFCHWGSRFRYQP   +H AIHEHI WLDH+
Sbjct:  225 RILAPYLEDLTNFFIISTDFCHWGSRFRYQPLGAAHSAIHEHISWLDHE 273

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BLAST of mRNA_H-elongata_contig168049.4244.1 vs. uniprot
Match: A0A7S3XLT3_HETAK (Hypothetical protein n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3XLT3_HETAK)

HSP 1 Score: 83.6 bits (205), Expect = 7.190e-18
Identity = 33/49 (67.35%), Postives = 39/49 (79.59%), Query Frame = 1

Query:    1 RLLLQFLEDPRNFFIVSSDFCHWGSRFRYQPRDPSHGAIHEHIRWLDHK 147
            RLL  +L+DP  FFI+SSDFCHWG RFRYQP +  HG IH++I WLDHK
Sbjct:  193 RLLAPYLDDPNCFFIISSDFCHWGQRFRYQPYEEDHGEIHQYIEWLDHK 241

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BLAST of mRNA_H-elongata_contig168049.4244.1 vs. uniprot
Match: F0WBS4_9STRA (Memolike protein putative n=1 Tax=Albugo laibachii Nc14 TaxID=890382 RepID=F0WBS4_9STRA)

HSP 1 Score: 81.6 bits (200), Expect = 3.240e-17
Identity = 32/50 (64.00%), Postives = 41/50 (82.00%), Query Frame = 1

Query:    1 RLLLQFLEDPRNFFIVSSDFCHWGSRFRYQPRDPSHGAIHEHIRWLDHKV 150
            RLL QF+ D  NFF++SSDFCHWG+RFRYQP D S+G IH++I+ LDH+ 
Sbjct:  174 RLLAQFMNDQSNFFVISSDFCHWGARFRYQPHDASYGEIHDYIKHLDHEA 223

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BLAST of mRNA_H-elongata_contig168049.4244.1 vs. uniprot
Match: A0A5D6Y2S4_9STRA (Uncharacterized protein n=1 Tax=Pythium brassicum TaxID=1485010 RepID=A0A5D6Y2S4_9STRA)

HSP 1 Score: 78.2 bits (191), Expect = 6.390e-16
Identity = 30/49 (61.22%), Postives = 40/49 (81.63%), Query Frame = 1

Query:    1 RLLLQFLEDPRNFFIVSSDFCHWGSRFRYQPRDPSHGAIHEHIRWLDHK 147
            ++L  +LED  N F++SSDFCHWGSRFRYQP D ++G IHE+I +LDH+
Sbjct:  177 KILAPYLEDEENLFVISSDFCHWGSRFRYQPHDSAYGEIHEYITYLDHE 225

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BLAST of mRNA_H-elongata_contig168049.4244.1 vs. uniprot
Match: A0A024G9G4_9STRA (Uncharacterized protein n=2 Tax=Albugo candida TaxID=65357 RepID=A0A024G9G4_9STRA)

HSP 1 Score: 77.0 bits (188), Expect = 1.720e-15
Identity = 31/50 (62.00%), Postives = 38/50 (76.00%), Query Frame = 1

Query:    1 RLLLQFLEDPRNFFIVSSDFCHWGSRFRYQPRDPSHGAIHEHIRWLDHKV 150
            RLL +F+ D  NFF++SSDFCHWG+RFRYQP D  HG IHE+I  LD + 
Sbjct:  174 RLLAEFMSDASNFFVISSDFCHWGARFRYQPYDAVHGEIHEYIEHLDQEA 223

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BLAST of mRNA_H-elongata_contig168049.4244.1 vs. uniprot
Match: W2JHV0_PHYPR (Uncharacterized protein n=7 Tax=Phytophthora TaxID=4783 RepID=W2JHV0_PHYPR)

HSP 1 Score: 75.5 bits (184), Expect = 3.910e-15
Identity = 28/49 (57.14%), Postives = 40/49 (81.63%), Query Frame = 1

Query:    1 RLLLQFLEDPRNFFIVSSDFCHWGSRFRYQPRDPSHGAIHEHIRWLDHK 147
            ++L  +LE+  N F++SSDFCHWG RFRYQP D ++G IHE+I++LDH+
Sbjct:  132 KILAPYLENDENLFVISSDFCHWGPRFRYQPHDSTYGEIHEYIKYLDHQ 180

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BLAST of mRNA_H-elongata_contig168049.4244.1 vs. uniprot
Match: A0A8K1C4Y3_PYTOL (Uncharacterized protein n=1 Tax=Pythium oligandrum TaxID=41045 RepID=A0A8K1C4Y3_PYTOL)

HSP 1 Score: 75.9 bits (185), Expect = 4.370e-15
Identity = 29/47 (61.70%), Postives = 39/47 (82.98%), Query Frame = 1

Query:    1 RLLLQFLEDPRNFFIVSSDFCHWGSRFRYQPRDPSHGAIHEHIRWLD 141
            R+L  ++ED  N F++SSDFCHWGSRFRYQP D ++G IHE+I++LD
Sbjct:  171 RILAPYIEDEGNLFVISSDFCHWGSRFRYQPHDSTYGEIHEYIKYLD 217

[Close]

BLAST of mRNA_H-elongata_contig168049.4244.1 vs. uniprot
Match: A0A0W8C3E4_PHYNI (50S ribosomal protein L9 n=9 Tax=Peronosporaceae TaxID=4777 RepID=A0A0W8C3E4_PHYNI)

HSP 1 Score: 75.5 bits (184), Expect = 4.880e-15
Identity = 28/49 (57.14%), Postives = 40/49 (81.63%), Query Frame = 1

Query:    1 RLLLQFLEDPRNFFIVSSDFCHWGSRFRYQPRDPSHGAIHEHIRWLDHK 147
            ++L  +LE+  N F++SSDFCHWG RFRYQP D ++G IHE+I++LDH+
Sbjct:  150 KILAPYLENDENLFVISSDFCHWGPRFRYQPHDSTYGEIHEYIKYLDHQ 198

[Close]

BLAST of mRNA_H-elongata_contig168049.4244.1 vs. uniprot
Match: H3GBV9_PHYRM (Uncharacterized protein n=13 Tax=Phytophthora TaxID=4783 RepID=H3GBV9_PHYRM)

HSP 1 Score: 75.5 bits (184), Expect = 7.250e-15
Identity = 28/49 (57.14%), Postives = 40/49 (81.63%), Query Frame = 1

Query:    1 RLLLQFLEDPRNFFIVSSDFCHWGSRFRYQPRDPSHGAIHEHIRWLDHK 147
            ++L  +LE+  N F++SSDFCHWG RFRYQP D ++G IHE+I++LDH+
Sbjct:  180 KILAPYLENDENLFVISSDFCHWGPRFRYQPHDSTYGEIHEYIKYLDHQ 228

The following BLAST results are available for this feature:

BLAST of mRNA_H-elongata_contig168049.4244.1 vs. uniprot

BLAST of mRNA_H-elongata_contig168049.4244.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25


Match Name	E-value	Identity	Description
A0A835YR11_9STRA	5.480e-19	74.47	MEMO1 family (Fragment) n=1 Tax=Tribonema minus Ta...	[more]
D7G5V7_ECTSI	7.160e-18	69.39	Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2...	[more]
A0A7S3XLT3_HETAK	7.190e-18	67.35	Hypothetical protein n=1 Tax=Heterosigma akashiwo ...	[more]
F0WBS4_9STRA	3.240e-17	64.00	Memolike protein putative n=1 Tax=Albugo laibachii...	[more]
A0A5D6Y2S4_9STRA	6.390e-16	61.22	Uncharacterized protein n=1 Tax=Pythium brassicum ...	[more]
A0A024G9G4_9STRA	1.720e-15	62.00	Uncharacterized protein n=2 Tax=Albugo candida Tax...	[more]
W2JHV0_PHYPR	3.910e-15	57.14	Uncharacterized protein n=7 Tax=Phytophthora TaxID...	[more]
A0A8K1C4Y3_PYTOL	4.370e-15	61.70	Uncharacterized protein n=1 Tax=Pythium oligandrum...	[more]
A0A0W8C3E4_PHYNI	4.880e-15	57.14	50S ribosomal protein L9 n=9 Tax=Peronosporaceae T...	[more]
H3GBV9_PHYRM	7.250e-15	57.14	Uncharacterized protein n=13 Tax=Phytophthora TaxI...	[more]

Pages

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
H-elongata_contig168049	contig	H-elongata_contig168049:800..1375 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Diamond blastx: OGS1.0 vs UniRef90	2022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious	2021-02-24

Properties


Property Name	Value
Taxonomic scope	Eukaryota
Seed ortholog score	84.7
Seed ortholog evalue	1.4e-14
Seed eggNOG ortholog	2880.D7G5V7
Preferred name	MEMO1
KEGG ko	ko:K06990
GOs	GO:0003674,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005737,GO:0005829,GO:0008150,GO:0032879,GO:0032886,GO:0033218,GO:0040012,GO:0042277,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0044424,GO:0044444,GO:0044464,GO:0050789,GO:0050794,GO:0051270,GO:0065007,GO:2000145
EggNOG free text desc.	regulation of microtubule-based process
EggNOG OGs	COG1355@1,KOG3086@2759
COG Functional cat.	C
Best tax level	Eukaryota
Best eggNOG OG	NA\|NA\|NA
BRITE	ko00000,ko04812
Hectar predicted targeting category	no signal peptide or anchor
Ec32 ortholog description	MEMO-like domain protein
Ec32 ortholog	Ec-sdr_f_000150.1
Exons	2
Model size	159
Cds size	159
Stop	1
Start	0

Relationships

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
1622929982.1679282-CDS-H-elongata_contig168049:799..908	1622929982.1679282-CDS-H-elongata_contig168049:799..908	Himanthalia elongata Himel1 dioecious	CDS	H-elongata_contig168049 800..908 -
1691679233.9601226-CDS-H-elongata_contig168049:799..908	1691679233.9601226-CDS-H-elongata_contig168049:799..908	Himanthalia elongata Himel1 dioecious	CDS	H-elongata_contig168049 800..908 -
1622929982.1866813-CDS-H-elongata_contig168049:1325..1375	1622929982.1866813-CDS-H-elongata_contig168049:1325..1375	Himanthalia elongata Himel1 dioecious	CDS	H-elongata_contig168049 1326..1375 -
1691679233.975583-CDS-H-elongata_contig168049:1325..1375	1691679233.975583-CDS-H-elongata_contig168049:1325..1375	Himanthalia elongata Himel1 dioecious	CDS	H-elongata_contig168049 1326..1375 -

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
mRNA_H-elongata_contig168049.4244.1	prot_H-elongata_contig168049.4244.1	Himanthalia elongata Himel1 dioecious	polypeptide	H-elongata_contig168049 800..1375 -

Sequences

The following sequences are available for this feature:

protein sequence
mRNA from alignment at H-elongata_contig168049:800..1375-
coding sequence from alignment at H-elongata_contig168049:800..1375-

protein sequence of mRNA_H-elongata_contig168049.4244.1

>prot_H-elongata_contig168049.4244.1 ID=prot_H-elongata_contig168049.4244.1|Name=mRNA_H-elongata_contig168049.4244.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=53bp
RLLLQFLEDPRNFFIVSSDFCHWGSRFRYQPRDPSHGAIHEHIRWLDHKV
RR*

mRNA from alignment at H-elongata_contig168049:800..1375-

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_H-elongata_contig168049.4244.1 ID=mRNA_H-elongata_contig168049.4244.1|Name=mRNA_H-elongata_contig168049.4244.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=576bp|location=Sequence derived from alignment at H-elongata_contig168049:800..1375- (Himanthalia elongata Himel1 dioecious)
AGATTGTTGTTGCAGTTCTTAGAGGACCCAAGAAACTTTTTCATCGTCAG
GTGTGCTATATTGTACTATACTATACTATACTCTCATATACTGTACTATA
CTATACTATACTATAATGTACTACTATATAAACAACAACGTCGCTGAAAT
CCCCAAGCGAAAGACGGGGTGTAGACGTGGCGGGTTTCACGGCTAGGGCA
TAATGTCATAATGACCGTAAGGATATAATGTTTCTGGCGCCCAATATAAC
GAATCGGAAGCCGCAAAGCAGGGTGGGCGCGTGGGGGGTCTAAACTGTCT
CTGCGGACCAGGACCAGCCTTGCGGGGTAGGTGTTACGTGTGTCCTGTCT
CTGCGCACAAGTCGAGACCGCTGCACTATACTGTGTTGTCTATCGGTAAT
CGCTCATGAACCCTCTTATGCTCCAAGACCCCTGTCTTAGCCTCCTTGGA
TGCCGATGATGCCGCAGCTCTGACTTCTGCCACTGGGGATCACGGTTCCG
TTACCAACCGCGGGACCCATCTCATGGGGCCATCCATGAGCATATTCGCT
GGCTAGACCACAAGGTTAGAAGATGA

Coding sequence (CDS) from alignment at H-elongata_contig168049:800..1375-

>mRNA_H-elongata_contig168049.4244.1 ID=mRNA_H-elongata_contig168049.4244.1|Name=mRNA_H-elongata_contig168049.4244.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=318bp|location=Sequence derived from alignment at H-elongata_contig168049:800..1375- (Himanthalia elongata Himel1 dioecious)
AGATTGTTGTTGCAGTTCTTAGAGGACCCAAGAAACTTTTTCATCGTCAG
AGATTGTTGTTGCAGTTCTTAGAGGACCCAAGAAACTTTTTCATCGTCAG
CTCTGACTTCTGCCACTGGGGATCACGGTTCCGTTACCAACCGCGGGACC
CATCTCATGGGGCCATCCATGAGCATATTCGCTGGCTAGACCACAAGGTT
AGAAGATGACTCTGACTTCTGCCACTGGGGATCACGGTTCCGTTACCAAC
CGCGGGACCCATCTCATGGGGCCATCCATGAGCATATTCGCTGGCTAGAC
CACAAGGTTAGAAGATGA