mRNA_H-elongata_contig167641.4223.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig167641.4223.1
Unique NamemRNA_H-elongata_contig167641.4223.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
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BLAST of mRNA_H-elongata_contig167641.4223.1 vs. uniprot
Match: D8LN21_ECTSI (Threonine synthase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LN21_ECTSI)

HSP 1 Score: 97.1 bits (240), Expect = 5.770e-22
Identity = 49/60 (81.67%), Postives = 54/60 (90.00%), Query Frame = 1 
Query:   31 QVSEALEATGEPPVVDRSGFSYSVPTGNFGNVLAGYYAKRMGLPVDKLVVATNENDILHR 210
            +VSEALEA GEP + + SG SYSVPTGNFG+VLAGYYAKRMGLPVD+LVVA NENDILHR
Sbjct:  259 RVSEALEAAGEP-LEEGSGLSYSVPTGNFGDVLAGYYAKRMGLPVDRLVVAVNENDILHR 317
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BLAST of mRNA_H-elongata_contig167641.4223.1 vs. uniprot
Match: A0A7S2RV02_9STRA (Hypothetical protein n=1 Tax=labyrinthulid quahog parasite QPX TaxID=96639 RepID=A0A7S2RV02_9STRA)

HSP 1 Score: 82.0 bits (201), Expect = 1.340e-16
Identity = 38/44 (86.36%), Postives = 42/44 (95.45%), Query Frame = 1 
Query:   79 RSGFSYSVPTGNFGNVLAGYYAKRMGLPVDKLVVATNENDILHR 210
            RS  S+SVPTGNFG++LAGYYAKRMGLPVD+LVVATNENDILHR
Sbjct:  320 RSKISFSVPTGNFGDILAGYYAKRMGLPVDQLVVATNENDILHR 363
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BLAST of mRNA_H-elongata_contig167641.4223.1 vs. uniprot
Match: A0A7R9WNW0_9STRA (Hypothetical protein (Fragment) n=1 Tax=Craspedostauros australis TaxID=1486917 RepID=A0A7R9WNW0_9STRA)

HSP 1 Score: 75.5 bits (184), Expect = 4.570e-16
Identity = 34/39 (87.18%), Postives = 38/39 (97.44%), Query Frame = 1 
Query:   94 YSVPTGNFGNVLAGYYAKRMGLPVDKLVVATNENDILHR 210
            Y+VPTGNFG++LAGYYAK+MGLPV KLVVATNENDILHR
Sbjct:   29 YAVPTGNFGDILAGYYAKQMGLPVGKLVVATNENDILHR 67
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BLAST of mRNA_H-elongata_contig167641.4223.1 vs. uniprot
Match: A0A7R9WCH9_9STRA (Hypothetical protein (Fragment) n=1 Tax=Pseudictyota dubia TaxID=2749911 RepID=A0A7R9WCH9_9STRA)

HSP 1 Score: 76.3 bits (186), Expect = 6.640e-16
Identity = 39/55 (70.91%), Postives = 43/55 (78.18%), Query Frame = 1 
Query:   46 LEATGEPPVVDRSGFSYSVPTGNFGNVLAGYYAKRMGLPVDKLVVATNENDILHR 210
            L  T + P V    FS  VPTGNFG++LAGYYAKRMGLPV KL+VATNENDILHR
Sbjct:   28 LRVTDKHPDVPEVHFS--VPTGNFGDILAGYYAKRMGLPVGKLIVATNENDILHR 80
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BLAST of mRNA_H-elongata_contig167641.4223.1 vs. uniprot
Match: A0A381SG24_9ZZZZ (Threonine synthase n=1 Tax=marine metagenome TaxID=408172 RepID=A0A381SG24_9ZZZZ)

HSP 1 Score: 79.7 bits (195), Expect = 8.260e-16
Identity = 35/40 (87.50%), Postives = 39/40 (97.50%), Query Frame = 1 
Query:   91 SYSVPTGNFGNVLAGYYAKRMGLPVDKLVVATNENDILHR 210
            S++VPTGNFGNVLAGYYAKRMGLP+DKLV+ TNENDILHR
Sbjct:  249 SFAVPTGNFGNVLAGYYAKRMGLPIDKLVIGTNENDILHR 288
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BLAST of mRNA_H-elongata_contig167641.4223.1 vs. uniprot
Match: A0A3D0TMU0_9DELT (Threonine synthase n=9 Tax=root TaxID=1 RepID=A0A3D0TMU0_9DELT)

HSP 1 Score: 79.7 bits (195), Expect = 8.270e-16
Identity = 38/46 (82.61%), Postives = 42/46 (91.30%), Query Frame = 1 
Query:   76 DRSGF-SYSVPTGNFGNVLAGYYAKRMGLPVDKLVVATNENDILHR 210
            D S F S++VPTGNFGNVLAGYYA+RMGLP+DKLVV TNENDILHR
Sbjct:  242 DNSEFVSFAVPTGNFGNVLAGYYARRMGLPIDKLVVGTNENDILHR 287
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BLAST of mRNA_H-elongata_contig167641.4223.1 vs. uniprot
Match: A0A7S3TB83_EMIHU (Threonine synthase n=1 Tax=Emiliania huxleyi TaxID=2903 RepID=A0A7S3TB83_EMIHU)

HSP 1 Score: 79.0 bits (193), Expect = 1.620e-15
Identity = 37/54 (68.52%), Postives = 45/54 (83.33%), Query Frame = 1 
Query:   49 EATGEPPVVDRSGFSYSVPTGNFGNVLAGYYAKRMGLPVDKLVVATNENDILHR 210
            EAT     ++ +  SYSVPTGNFG++LAG+YAK+MGLPV KL+VATNENDILHR
Sbjct:  291 EATSPGAALEGTQVSYSVPTGNFGDILAGWYAKQMGLPVRKLIVATNENDILHR 344
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BLAST of mRNA_H-elongata_contig167641.4223.1 vs. uniprot
Match: A0A6V2V148_EMIHU (Threonine synthase n=2 Tax=Emiliania huxleyi TaxID=2903 RepID=A0A6V2V148_EMIHU)

HSP 1 Score: 79.0 bits (193), Expect = 1.630e-15
Identity = 37/54 (68.52%), Postives = 45/54 (83.33%), Query Frame = 1 
Query:   49 EATGEPPVVDRSGFSYSVPTGNFGNVLAGYYAKRMGLPVDKLVVATNENDILHR 210
            EAT     ++ +  SYSVPTGNFG++LAG+YAK+MGLPV KL+VATNENDILHR
Sbjct:  291 EATSPGAALEGTQVSYSVPTGNFGDILAGWYAKQMGLPVRKLIVATNENDILHR 344
[Close]
BLAST of mRNA_H-elongata_contig167641.4223.1 vs. uniprot
Match: A0A520PBH9_9PROT (Threonine synthase n=5 Tax=root TaxID=1 RepID=A0A520PBH9_9PROT)

HSP 1 Score: 78.6 bits (192), Expect = 2.130e-15
Identity = 35/40 (87.50%), Postives = 38/40 (95.00%), Query Frame = 1 
Query:   91 SYSVPTGNFGNVLAGYYAKRMGLPVDKLVVATNENDILHR 210
            S+ VPTGNFGNVLAGYYAKRMGLP+DKLV+ TNENDILHR
Sbjct:  249 SFVVPTGNFGNVLAGYYAKRMGLPIDKLVIGTNENDILHR 288
[Close]
BLAST of mRNA_H-elongata_contig167641.4223.1 vs. uniprot
Match: A0A0M0JSA7_9EUKA (Threonine synthase n=1 Tax=Chrysochromulina tobinii TaxID=1460289 RepID=A0A0M0JSA7_9EUKA)

HSP 1 Score: 78.2 bits (191), Expect = 2.740e-15
Identity = 37/51 (72.55%), Postives = 44/51 (86.27%), Query Frame = 1 
Query:   58 GEPPVVDRSGFSYSVPTGNFGNVLAGYYAKRMGLPVDKLVVATNENDILHR 210
            G PP+V     S+SVPTGNFG++LAGYYAK+MGLPV KL+VATN+NDILHR
Sbjct:  194 GSPPLV-----SFSVPTGNFGDILAGYYAKQMGLPVGKLIVATNKNDILHR 239
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig167641.4223.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LN21_ECTSI5.770e-2281.67Threonine synthase n=1 Tax=Ectocarpus siliculosus ... [more]
A0A7S2RV02_9STRA1.340e-1686.36Hypothetical protein n=1 Tax=labyrinthulid quahog ... [more]
A0A7R9WNW0_9STRA4.570e-1687.18Hypothetical protein (Fragment) n=1 Tax=Craspedost... [more]
A0A7R9WCH9_9STRA6.640e-1670.91Hypothetical protein (Fragment) n=1 Tax=Pseudictyo... [more]
A0A381SG24_9ZZZZ8.260e-1687.50Threonine synthase n=1 Tax=marine metagenome TaxID... [more]
A0A3D0TMU0_9DELT8.270e-1682.61Threonine synthase n=9 Tax=root TaxID=1 RepID=A0A3... [more]
A0A7S3TB83_EMIHU1.620e-1568.52Threonine synthase n=1 Tax=Emiliania huxleyi TaxID... [more]
A0A6V2V148_EMIHU1.630e-1568.52Threonine synthase n=2 Tax=Emiliania huxleyi TaxID... [more]
A0A520PBH9_9PROT2.130e-1587.50Threonine synthase n=5 Tax=root TaxID=1 RepID=A0A5... [more]
A0A0M0JSA7_9EUKA2.740e-1572.55Threonine synthase n=1 Tax=Chrysochromulina tobini... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig167641contigH-elongata_contig167641:816..1028 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score97.8
Seed ortholog evalue2.1e-18
Seed eggNOG ortholog2880.D8LN21
Preferred nameTHR4
KEGG rclassRC00017,RC00526
KEGG koko:K01733
KEGG ReactionR01466,R05086
KEGG Pathwayko00260,ko00750,ko01100,ko01110,ko01120,ko01230,map00260,map00750,map01100,map01110,map01120,map01230
KEGG ModuleM00018
GOsGO:0003674,GO:0003824,GO:0004795,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005737,GO:0006082,GO:0006520,GO:0006566,GO:0006793,GO:0006796,GO:0006807,GO:0008150,GO:0008152,GO:0008652,GO:0009058,GO:0009066,GO:0009067,GO:0009088,GO:0009987,GO:0016053,GO:0016311,GO:0016829,GO:0016835,GO:0016838,GO:0019752,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043436,GO:0044237,GO:0044238,GO:0044249,GO:0044281,GO:0044283,GO:0044424,GO:0044464,GO:0046394,GO:0071704,GO:1901564,GO:1901566,GO:1901576,GO:1901605,GO:1901607
EggNOG free text desc.2-oxobutyrate metabolic process
EggNOG OGsCOG0498@1,KOG2616@2759
EC4.2.3.1
COG Functional cat.E
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00002,ko01000
Hectar predicted targeting categoryother localisation
Exons1
Model size213
Cds size213
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929979.1320546-CDS-H-elongata_contig167641:815..10281622929979.1320546-CDS-H-elongata_contig167641:815..1028Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig167641 816..1028 -
1691679232.661929-CDS-H-elongata_contig167641:815..10281691679232.661929-CDS-H-elongata_contig167641:815..1028Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig167641 816..1028 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig167641.4223.1prot_H-elongata_contig167641.4223.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig167641 816..1028 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig167641.4223.1

>prot_H-elongata_contig167641.4223.1 ID=prot_H-elongata_contig167641.4223.1|Name=mRNA_H-elongata_contig167641.4223.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=71bp
LSFVRSSFVAQVSEALEATGEPPVVDRSGFSYSVPTGNFGNVLAGYYAKR
MGLPVDKLVVATNENDILHR*
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mRNA from alignment at H-elongata_contig167641:816..1028-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig167641.4223.1 ID=mRNA_H-elongata_contig167641.4223.1|Name=mRNA_H-elongata_contig167641.4223.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=213bp|location=Sequence derived from alignment at H-elongata_contig167641:816..1028- (Himanthalia elongata Himel1 dioecious)
TTATCTTTCGTCCGTTCTTCTTTCGTTGCCCAGGTGTCCGAAGCACTCGA
GGCGACCGGGGAGCCGCCGGTCGTGGACAGGTCAGGCTTCAGCTACTCGG
TGCCGACTGGAAACTTTGGCAATGTCCTGGCCGGGTACTACGCCAAACGG
ATGGGTCTGCCGGTGGACAAGCTGGTGGTTGCTACCAACGAAAACGATAT
CCTCCACAGGTAG
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Coding sequence (CDS) from alignment at H-elongata_contig167641:816..1028-

>mRNA_H-elongata_contig167641.4223.1 ID=mRNA_H-elongata_contig167641.4223.1|Name=mRNA_H-elongata_contig167641.4223.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=426bp|location=Sequence derived from alignment at H-elongata_contig167641:816..1028- (Himanthalia elongata Himel1 dioecious)
TTATCTTTCGTCCGTTCTTCTTTCGTTGCCCAGGTGTCCGAAGCACTCGA
GGCGACCGGGGAGCCGCCGGTCGTGGACAGGTCAGGCTTCAGCTACTCGG
TGCCGACTGGAAACTTTGGCAATGTCCTGGCCGGGTACTACGCCAAACGG
ATGGGTCTGCCGGTGGACAAGCTGGTGGTTGCTACCAACGAAAACGATAT
CCTCCACAGGTAGTTATCTTTCGTCCGTTCTTCTTTCGTTGCCCAGGTGT
CCGAAGCACTCGAGGCGACCGGGGAGCCGCCGGTCGTGGACAGGTCAGGC
TTCAGCTACTCGGTGCCGACTGGAAACTTTGGCAATGTCCTGGCCGGGTA
CTACGCCAAACGGATGGGTCTGCCGGTGGACAAGCTGGTGGTTGCTACCA
ACGAAAACGATATCCTCCACAGGTAG
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