mRNA_H-elongata_contig167030.4192.1 (mRNA) Himanthalia elongata Himel1 dioecious
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Overview
Homology
BLAST of mRNA_H-elongata_contig167030.4192.1 vs. uniprot
Match: A0A6H5JJL6_9PHAE (SEC7 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JJL6_9PHAE) HSP 1 Score: 167 bits (423), Expect = 6.640e-46 Identity = 90/107 (84.11%), Postives = 99/107 (92.52%), Query Frame = 1
Query: 1 GDAEDQNKSVLVRVMRFLSLLSDPRSNGGAEGVLSLSLINIALEAGGSDLGRIPALVRVMRGDLCKHLLQNSQIEDLNVLSLTLRVVFNLFNSIKDDLKIQLEVFLT 321
DA +Q + VLV++MRFLSLLSDPRSNG AE VLSLSLINIALEAGG+DLGRIP+LVRVMRGDLCKHLLQNSQ +DL+VLSLTLRVVFNLFNSIKD LK+QLEVFLT
Sbjct: 386 SDAAEQ-EGVLVKLMRFLSLLSDPRSNGSAECVLSLSLINIALEAGGADLGRIPSLVRVMRGDLCKHLLQNSQTDDLDVLSLTLRVVFNLFNSIKDHLKVQLEVFLT 491
BLAST of mRNA_H-elongata_contig167030.4192.1 vs. uniprot
Match: D7FVF3_ECTSI (GBF1, ArfGEF protein of the BIG/GBF subfamily n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FVF3_ECTSI) HSP 1 Score: 166 bits (421), Expect = 1.230e-45 Identity = 90/107 (84.11%), Postives = 98/107 (91.59%), Query Frame = 1
Query: 1 GDAEDQNKSVLVRVMRFLSLLSDPRSNGGAEGVLSLSLINIALEAGGSDLGRIPALVRVMRGDLCKHLLQNSQIEDLNVLSLTLRVVFNLFNSIKDDLKIQLEVFLT 321
G AE + VLV++MRFLSLLSDPRSNG AE VLSLSLINIALEAGG+DLGRIP+LVRVMRGDLCKHLLQNSQ +DL+VLSLTLRVVFNLFNSIKD LK+QLEVFLT
Sbjct: 387 GTAEQEG--VLVKLMRFLSLLSDPRSNGSAECVLSLSLINIALEAGGADLGRIPSLVRVMRGDLCKHLLQNSQTDDLDVLSLTLRVVFNLFNSIKDHLKVQLEVFLT 491
BLAST of mRNA_H-elongata_contig167030.4192.1 vs. uniprot
Match: A0A2D4CF02_PYTIN (SEC7 domain-containing protein (Fragment) n=1 Tax=Pythium insidiosum TaxID=114742 RepID=A0A2D4CF02_PYTIN) HSP 1 Score: 112 bits (280), Expect = 1.270e-26 Identity = 64/107 (59.81%), Postives = 75/107 (70.09%), Query Frame = 1
Query: 1 GDAEDQNKSVLVRVMRFLSLLSDPRSNGGAEGVLSLSLINIALEAGGSDLGRIPALVRVMRGDLCKHLLQNSQIEDLNVLSLTLRVVFNLFNSIKDDLKIQLEVFLT 321
G A ++L + + FL+ L P SN A VL L LINI LE G+ LG ALV V++GDLCK LLQNS+ E+L VLSLTLRVVFNLFNSIKD LK+QLEVF T
Sbjct: 221 GRANGYGVALLEQTLTFLARLIAPASNDDATCVLGLRLINIVLETAGASLGAHAALVSVLQGDLCKFLLQNSETEELAVLSLTLRVVFNLFNSIKDHLKVQLEVFFT 327
BLAST of mRNA_H-elongata_contig167030.4192.1 vs. uniprot
Match: A0A8K1CH01_PYTOL (Uncharacterized protein n=1 Tax=Pythium oligandrum TaxID=41045 RepID=A0A8K1CH01_PYTOL) HSP 1 Score: 110 bits (274), Expect = 8.210e-26 Identity = 60/98 (61.22%), Postives = 72/98 (73.47%), Query Frame = 1
Query: 28 VLVRVMRFLSLLSDPRSNGGAEGVLSLSLINIALEAGGSDLGRIPALVRVMRGDLCKHLLQNSQIEDLNVLSLTLRVVFNLFNSIKDDLKIQLEVFLT 321
+L R+++FLS L P + A V L LINI LE G+ LG P LV V++GDL K+LLQNS+ EDL +LSLTLRVVFNLFNSIKD LK+QLEVF T
Sbjct: 237 LLERILQFLSTLISPTAKDEATCVFGLRLINIVLETAGTGLGSHPGLVSVLQGDLSKYLLQNSETEDLAILSLTLRVVFNLFNSIKDHLKVQLEVFFT 334
BLAST of mRNA_H-elongata_contig167030.4192.1 vs. uniprot
Match: A0A225WXV2_9STRA (SEC7 domain-containing protein n=1 Tax=Phytophthora megakarya TaxID=4795 RepID=A0A225WXV2_9STRA) HSP 1 Score: 109 bits (272), Expect = 1.530e-25 Identity = 59/98 (60.20%), Postives = 72/98 (73.47%), Query Frame = 1
Query: 28 VLVRVMRFLSLLSDPRSNGGAEGVLSLSLINIALEAGGSDLGRIPALVRVMRGDLCKHLLQNSQIEDLNVLSLTLRVVFNLFNSIKDDLKIQLEVFLT 321
+L R++ F+S L P N A VL L LIN+ LE G+ LG P+LV V++GDL K LLQNS+ E+L +LSLTLRVVFNLFNSIKD LK+QLEVF T
Sbjct: 263 LLERILHFISGLISPTENEEATCVLGLRLINVVLETAGTGLGNHPSLVSVLQGDLSKFLLQNSETEELGILSLTLRVVFNLFNSIKDHLKVQLEVFFT 360
BLAST of mRNA_H-elongata_contig167030.4192.1 vs. uniprot
Match: A0A6A3JS86_9STRA (SEC7 domain-containing protein n=4 Tax=Phytophthora TaxID=4783 RepID=A0A6A3JS86_9STRA) HSP 1 Score: 108 bits (270), Expect = 2.850e-25 Identity = 59/98 (60.20%), Postives = 71/98 (72.45%), Query Frame = 1
Query: 28 VLVRVMRFLSLLSDPRSNGGAEGVLSLSLINIALEAGGSDLGRIPALVRVMRGDLCKHLLQNSQIEDLNVLSLTLRVVFNLFNSIKDDLKIQLEVFLT 321
+L R++ F+S L P N A VL L LIN+ LE G+ LG P LV V++GDL K LLQNS+ E+L +LSLTLRVVFNLFNSIKD LK+QLEVF T
Sbjct: 260 LLERILHFVSGLISPSENEEATCVLGLRLINVVLETAGTGLGNHPGLVSVLQGDLSKFLLQNSETEELGILSLTLRVVFNLFNSIKDHLKVQLEVFFT 357
BLAST of mRNA_H-elongata_contig167030.4192.1 vs. uniprot
Match: A0A7S2WBL3_9STRA (Hypothetical protein n=1 Tax=labyrinthulid quahog parasite QPX TaxID=96639 RepID=A0A7S2WBL3_9STRA) HSP 1 Score: 108 bits (270), Expect = 2.860e-25 Identity = 62/118 (52.54%), Postives = 78/118 (66.10%), Query Frame = 1
Query: 7 AEDQNKSVLVRVMRFLSLLSDPRSNGGAEGVLSLSLINIALEAGGSDLG-------------RIPALVRVMRGDLCKHLLQNSQIEDLNVLSLTLRVVFNLFNSIKDDLKIQLEVFLT 321
AE VLV+V+ FLS L+DP N + + +L LINI LE+GG LG ++ V++GDLCKHLLQNSQ DL+VLSLTLRV+FNLFN++K LK+QLEVFLT
Sbjct: 319 AESYGLPVLVKVLEFLSNLTDPLRNTEPDRIFALQLINIILESGGETLGTWSPPDEPNDPRAEASPIITVLQGDLCKHLLQNSQSLDLSVLSLTLRVIFNLFNAMKGHLKVQLEVFLT 436
BLAST of mRNA_H-elongata_contig167030.4192.1 vs. uniprot
Match: A0A3F2RJI9_9STRA (SEC7 domain-containing protein n=3 Tax=Phytophthora kernoviae TaxID=325452 RepID=A0A3F2RJI9_9STRA) HSP 1 Score: 107 bits (268), Expect = 5.310e-25 Identity = 58/98 (59.18%), Postives = 71/98 (72.45%), Query Frame = 1
Query: 28 VLVRVMRFLSLLSDPRSNGGAEGVLSLSLINIALEAGGSDLGRIPALVRVMRGDLCKHLLQNSQIEDLNVLSLTLRVVFNLFNSIKDDLKIQLEVFLT 321
+L R++ F+S L P N A VL L LIN+ LE G+ LG P LV V++GDL K LLQNS+ E+L +LSLTLRVVFNLFNSIKD LK+QLE+F T
Sbjct: 240 LLERILHFISGLISPTENEEATCVLGLRLINVVLETAGTGLGNHPCLVSVLQGDLSKFLLQNSETEELAILSLTLRVVFNLFNSIKDHLKVQLEIFFT 337
BLAST of mRNA_H-elongata_contig167030.4192.1 vs. uniprot
Match: W2PX92_PHYPN (SEC7 domain-containing protein n=12 Tax=Phytophthora TaxID=4783 RepID=W2PX92_PHYPN) HSP 1 Score: 107 bits (266), Expect = 9.880e-25 Identity = 58/98 (59.18%), Postives = 70/98 (71.43%), Query Frame = 1
Query: 28 VLVRVMRFLSLLSDPRSNGGAEGVLSLSLINIALEAGGSDLGRIPALVRVMRGDLCKHLLQNSQIEDLNVLSLTLRVVFNLFNSIKDDLKIQLEVFLT 321
+L R++ F+S L P N VL L LIN+ LE G+ LG P LV V++GDL K LLQNS+ E+L +LSLTLRVVFNLFNSIKD LK+QLEVF T
Sbjct: 262 LLERILHFISGLISPTENEEMTCVLGLRLINVVLETAGTGLGNHPCLVSVLQGDLSKFLLQNSETEELGILSLTLRVVFNLFNSIKDHLKVQLEVFFT 359
BLAST of mRNA_H-elongata_contig167030.4192.1 vs. uniprot
Match: A0A3M6VFJ1_9STRA (SEC7 domain-containing protein n=1 Tax=Peronospora effusa TaxID=542832 RepID=A0A3M6VFJ1_9STRA) HSP 1 Score: 106 bits (265), Expect = 1.350e-24 Identity = 57/98 (58.16%), Postives = 70/98 (71.43%), Query Frame = 1
Query: 28 VLVRVMRFLSLLSDPRSNGGAEGVLSLSLINIALEAGGSDLGRIPALVRVMRGDLCKHLLQNSQIEDLNVLSLTLRVVFNLFNSIKDDLKIQLEVFLT 321
+L R++ F+S L+ P N V L LIN+ LE G+ LG P LV V++GDL K LLQNS+ E+L +LSLTLRVVFNLFNSIKD LK+QLEVF T
Sbjct: 270 LLERILHFISSLTSPMENEEMTCVQGLRLINVVLETAGTGLGNHPCLVSVLQGDLSKFLLQNSETEELGILSLTLRVVFNLFNSIKDHLKVQLEVFFT 367 The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig167030.4192.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-elongata_contig167030.4192.1 >prot_H-elongata_contig167030.4192.1 ID=prot_H-elongata_contig167030.4192.1|Name=mRNA_H-elongata_contig167030.4192.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=107bp GDAEDQNKSVLVRVMRFLSLLSDPRSNGGAEGVLSLSLINIALEAGGSDLback to top mRNA from alignment at H-elongata_contig167030:484..804+ Legend: CDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-elongata_contig167030.4192.1 ID=mRNA_H-elongata_contig167030.4192.1|Name=mRNA_H-elongata_contig167030.4192.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=321bp|location=Sequence derived from alignment at H-elongata_contig167030:484..804+ (Himanthalia elongata Himel1 dioecious)back to top Coding sequence (CDS) from alignment at H-elongata_contig167030:484..804+ >mRNA_H-elongata_contig167030.4192.1 ID=mRNA_H-elongata_contig167030.4192.1|Name=mRNA_H-elongata_contig167030.4192.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=642bp|location=Sequence derived from alignment at H-elongata_contig167030:484..804+ (Himanthalia elongata Himel1 dioecious)back to top |