mRNA_H-elongata_contig16652.4175.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig16652.4175.1
Unique NamemRNA_H-elongata_contig16652.4175.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
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BLAST of mRNA_H-elongata_contig16652.4175.1 vs. uniprot
Match: A0A6H5KAN7_9PHAE (Dimer_Tnp_hAT domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KAN7_9PHAE)

HSP 1 Score: 94.0 bits (232), Expect = 1.400e-20
Identity = 44/86 (51.16%), Postives = 59/86 (68.60%), Query Frame = 1 
Query:    1 DLFKRFKGEDVHPADVFFHGTVGQGRNVINALEQLSIPVSECAAHRLSTAILWALGINGTANTGKNPEAKALVTRVAALVGVFTHS 258
            + F    GE+V P DVF   TV QG NV+NA   L + V +C AHRL++  +WALGING+  TG+NP  + L+ R+AA+VGVF+HS
Sbjct:    6 EFFADMMGENVQPKDVFLAFTVDQGGNVVNACRNLDVEVLKCNAHRLNSVTMWALGINGSIRTGENPAMEKLMKRLAAVVGVFSHS 91
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BLAST of mRNA_H-elongata_contig16652.4175.1 vs. uniprot
Match: A0A6H5KJ52_9PHAE (Dimer_Tnp_hAT domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KJ52_9PHAE)

HSP 1 Score: 94.0 bits (232), Expect = 1.630e-20
Identity = 44/86 (51.16%), Postives = 59/86 (68.60%), Query Frame = 1 
Query:    1 DLFKRFKGEDVHPADVFFHGTVGQGRNVINALEQLSIPVSECAAHRLSTAILWALGINGTANTGKNPEAKALVTRVAALVGVFTHS 258
            + F    GE+V P DVF   TV QG NV+NA   L + V +C AHRL++  +WALGING+  TG+NP  + L+ R+AA+VGVF+HS
Sbjct:  334 EFFADMMGENVQPKDVFLAFTVDQGGNVVNACRNLDVEVLKCNAHRLNSVTMWALGINGSIRTGENPAMEKLMKRLAAVVGVFSHS 419
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BLAST of mRNA_H-elongata_contig16652.4175.1 vs. uniprot
Match: A0A6H5JRT6_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JRT6_9PHAE)

HSP 1 Score: 87.8 bits (216), Expect = 2.370e-18
Identity = 45/86 (52.33%), Postives = 58/86 (67.44%), Query Frame = 1 
Query:    1 DLFKRFKGEDVHPADVFFHGTVGQGRNVINALEQLSIPVSECAAHRLSTAILWALGINGTANTGKNPEAKALVTRVAALVGVFTHS 258
            + F  F GEDV P DVF   TV QG NV+NA + L +PV +C  HR++TA+LWALGI G  N  +N     L+ ++AALVGVF+HS
Sbjct:  344 EYFADFMGEDVEPKDVFLAFTVDQGGNVVNACKALGVPVVKCNCHRVNTAVLWALGIAG--NGRRNKVMGDLMKKLAALVGVFSHS 427
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BLAST of mRNA_H-elongata_contig16652.4175.1 vs. uniprot
Match: A0A6H5JXV5_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JXV5_9PHAE)

HSP 1 Score: 86.7 bits (213), Expect = 5.780e-18
Identity = 43/86 (50.00%), Postives = 56/86 (65.12%), Query Frame = 1 
Query:    1 DLFKRFKGEDVHPADVFFHGTVGQGRNVINALEQLSIPVSECAAHRLSTAILWALGINGTANTGKNPEAKALVTRVAALVGVFTHS 258
            + FK   G  V P DVF   TV QG+N++NA   L +PV EC  HR+++A+LWALGI G A T KN     L+ ++AA VGVF+HS
Sbjct:  152 EYFKDLIGPSVQPHDVFLGFTVDQGKNIVNAYTALGVPVVECNCHRVNSAVLWALGIAGCARTCKNKLMGDLMKKLAASVGVFSHS 237
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BLAST of mRNA_H-elongata_contig16652.4175.1 vs. uniprot
Match: A0A6H5JTB8_9PHAE (Dimer_Tnp_hAT domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JTB8_9PHAE)

HSP 1 Score: 86.7 bits (213), Expect = 5.960e-18
Identity = 43/86 (50.00%), Postives = 56/86 (65.12%), Query Frame = 1 
Query:    1 DLFKRFKGEDVHPADVFFHGTVGQGRNVINALEQLSIPVSECAAHRLSTAILWALGINGTANTGKNPEAKALVTRVAALVGVFTHS 258
            + F  F GE V P+DVF   TV QG+N+INA   L + V EC  HRL+TA++WALGI G      NP    L+ ++AA+VGVF+HS
Sbjct:  151 EYFSGFMGESVQPSDVFLAFTVDQGKNIINACTALGVTVVECNCHRLNTAVVWALGIAGKGRL--NPAMGTLMKKLAAMVGVFSHS 234
[Close]
BLAST of mRNA_H-elongata_contig16652.4175.1 vs. uniprot
Match: A0A6H5JGG8_9PHAE (Dimer_Tnp_hAT domain-containing protein n=4 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JGG8_9PHAE)

HSP 1 Score: 86.7 bits (213), Expect = 6.030e-18
Identity = 43/86 (50.00%), Postives = 56/86 (65.12%), Query Frame = 1 
Query:    1 DLFKRFKGEDVHPADVFFHGTVGQGRNVINALEQLSIPVSECAAHRLSTAILWALGINGTANTGKNPEAKALVTRVAALVGVFTHS 258
            + F  F GE V P+DVF   TV QG+N+INA   L + V EC  HRL+TA++WALGI G      NP    L+ ++AA+VGVF+HS
Sbjct:  346 EYFSGFMGESVQPSDVFLAFTVDQGKNIINACTALGVTVVECNCHRLNTAVVWALGIAGKGRL--NPAMGTLMKKLAAMVGVFSHS 429
[Close]
BLAST of mRNA_H-elongata_contig16652.4175.1 vs. uniprot
Match: A0A6H5KDJ6_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KDJ6_9PHAE)

HSP 1 Score: 84.3 bits (207), Expect = 3.740e-17
Identity = 41/86 (47.67%), Postives = 58/86 (67.44%), Query Frame = 1 
Query:    1 DLFKRFKGEDVHPADVFFHGTVGQGRNVINALEQLSIPVSECAAHRLSTAILWALGINGTANTGKNPEAKALVTRVAALVGVFTHS 258
            + F  F GE V P+DVF   TV QG NV+NA   L + V +C  HR+++A++WALGI G+A T +N +   L+ ++AALVGVF+ S
Sbjct:   10 EYFGGFMGESVEPSDVFLAFTVDQGGNVVNACTALGVQVVKCNCHRINSAVVWALGIAGSATTCRNTKMGGLMKKLAALVGVFSPS 95
[Close]
BLAST of mRNA_H-elongata_contig16652.4175.1 vs. uniprot
Match: A0A6H5JQI6_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JQI6_9PHAE)

HSP 1 Score: 82.4 bits (202), Expect = 1.830e-16
Identity = 44/86 (51.16%), Postives = 54/86 (62.79%), Query Frame = 1 
Query:    1 DLFKRFKGEDVHPADVFFHGTVGQGRNVINALEQLSIPVSECAAHRLSTAILWALGINGTANTGKNPEAKALVTRVAALVGVFTHS 258
            + F    G  V   DVF   TV QG+NV+NA   L +PV EC  HR+++A+LWALGI G+A T KN   K L    AALVGVF+HS
Sbjct:  155 EYFTDLMGGSVESQDVFLAFTVDQGKNVVNACTALGVPVVECNCHRVNSAVLWALGIAGSATTCKNKPMKKL----AALVGVFSHS 236
[Close]
BLAST of mRNA_H-elongata_contig16652.4175.1 vs. uniprot
Match: A0A6H5KAS2_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KAS2_9PHAE)

HSP 1 Score: 76.6 bits (187), Expect = 1.800e-14
Identity = 39/79 (49.37%), Postives = 53/79 (67.09%), Query Frame = 1 
Query:   22 GEDVHPADVFFHGTVGQGRNVINALEQLSIPVSECAAHRLSTAILWALGINGTANTGKNPEAKALVTRVAALVGVFTHS 258
            GE V P++ F   TV QG+N+INA   L + V EC  HR++TA++WALGI   A   KNP    L+ ++AA+VGVF+HS
Sbjct:    2 GESVVPSNDFLAFTVDQGKNIINACTALDVTVVECNCHRVNTAVVWALGI--AAKGRKNPTMGTLMKKLAAMVGVFSHS 78
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig16652.4175.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 9
Match NameE-valueIdentityDescription
A0A6H5KAN7_9PHAE1.400e-2051.16Dimer_Tnp_hAT domain-containing protein n=1 Tax=Ec... [more]
A0A6H5KJ52_9PHAE1.630e-2051.16Dimer_Tnp_hAT domain-containing protein n=1 Tax=Ec... [more]
A0A6H5JRT6_9PHAE2.370e-1852.33Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JXV5_9PHAE5.780e-1850.00Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JTB8_9PHAE5.960e-1850.00Dimer_Tnp_hAT domain-containing protein n=1 Tax=Ec... [more]
A0A6H5JGG8_9PHAE6.030e-1850.00Dimer_Tnp_hAT domain-containing protein n=4 Tax=Ec... [more]
A0A6H5KDJ6_9PHAE3.740e-1747.67Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JQI6_9PHAE1.830e-1651.16Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KAS2_9PHAE1.800e-1449.37Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig16652contigH-elongata_contig16652:695..952 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size258
Cds size258
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929974.4497013-CDS-H-elongata_contig16652:694..9521622929974.4497013-CDS-H-elongata_contig16652:694..952Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig16652 695..952 +
1691679230.7121134-CDS-H-elongata_contig16652:694..9521691679230.7121134-CDS-H-elongata_contig16652:694..952Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig16652 695..952 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig16652.4175.1prot_H-elongata_contig16652.4175.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig16652 695..952 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig16652.4175.1

>prot_H-elongata_contig16652.4175.1 ID=prot_H-elongata_contig16652.4175.1|Name=mRNA_H-elongata_contig16652.4175.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=86bp
DLFKRFKGEDVHPADVFFHGTVGQGRNVINALEQLSIPVSECAAHRLSTA
ILWALGINGTANTGKNPEAKALVTRVAALVGVFTHS
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mRNA from alignment at H-elongata_contig16652:695..952+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig16652.4175.1 ID=mRNA_H-elongata_contig16652.4175.1|Name=mRNA_H-elongata_contig16652.4175.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=258bp|location=Sequence derived from alignment at H-elongata_contig16652:695..952+ (Himanthalia elongata Himel1 dioecious)
GACTTGTTCAAACGTTTCAAAGGCGAGGATGTTCACCCAGCGGATGTCTT
CTTCCATGGAACAGTGGGCCAGGGCAGGAACGTCATTAACGCGCTGGAGC
AGCTTTCAATCCCCGTGTCGGAGTGCGCCGCTCACCGACTTAGCACCGCC
ATCCTGTGGGCCCTCGGGATCAACGGGACCGCTAACACTGGCAAAAATCC
CGAGGCGAAGGCTCTCGTCACCAGGGTTGCTGCTCTCGTTGGCGTCTTCA
CGCACTCC
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Coding sequence (CDS) from alignment at H-elongata_contig16652:695..952+

>mRNA_H-elongata_contig16652.4175.1 ID=mRNA_H-elongata_contig16652.4175.1|Name=mRNA_H-elongata_contig16652.4175.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=516bp|location=Sequence derived from alignment at H-elongata_contig16652:695..952+ (Himanthalia elongata Himel1 dioecious)
GACTTGTTCAAACGTTTCAAAGGCGAGGATGTTCACCCAGCGGATGTCTT
CTTCCATGGAACAGTGGGCCAGGGCAGGAACGTCATTAACGCGCTGGAGC
AGCTTTCAATCCCCGTGTCGGAGTGCGCCGCTCACCGACTTAGCACCGCC
ATCCTGTGGGCCCTCGGGATCAACGGGACCGCTAACACTGGCAAAAATCC
CGAGGCGAAGGCTCTCGTCACCAGGGTTGCTGCTCTCGTTGGCGTCTTCA
CGCACTCCGACTTGTTCAAACGTTTCAAAGGCGAGGATGTTCACCCAGCG
GATGTCTTCTTCCATGGAACAGTGGGCCAGGGCAGGAACGTCATTAACGC
GCTGGAGCAGCTTTCAATCCCCGTGTCGGAGTGCGCCGCTCACCGACTTA
GCACCGCCATCCTGTGGGCCCTCGGGATCAACGGGACCGCTAACACTGGC
AAAAATCCCGAGGCGAAGGCTCTCGTCACCAGGGTTGCTGCTCTCGTTGG
CGTCTTCACGCACTCC
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