mRNA_H-elongata_contig16613.4161.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig16613.4161.1
Unique NamemRNA_H-elongata_contig16613.4161.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
BLAST of mRNA_H-elongata_contig16613.4161.1 vs. uniprot
Match: D8LE37_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LE37_ECTSI)

HSP 1 Score: 156 bits (394), Expect = 4.100e-42
Identity = 70/96 (72.92%), Postives = 82/96 (85.42%), Query Frame = 3
Query:   18 QTMEFDIVDQYNICVDCFNHDLLESDVLVGSAQWSLLPAFKRGTMDAWIPLTAPNGFGPPNEAGEIHCVFSFVGPPGLAYPQHQPGVDSFDDSLRV 305
            +T+E D+VDQY + ++CFNHD+L+SD L+GSAQ SLLP FKRGT+D WI LT  +G GPP EAGEIHCVFSF GP G+AYPQHQPGVDSFDDSLRV
Sbjct:  579 ETIEIDVVDQYTLWLECFNHDVLDSDELIGSAQCSLLPVFKRGTLDTWIQLTCSSGPGPPKEAGEIHCVFSFKGPLGVAYPQHQPGVDSFDDSLRV 674          
BLAST of mRNA_H-elongata_contig16613.4161.1 vs. uniprot
Match: A0A7S2FW97_9STRA (Hypothetical protein n=1 Tax=Florenciella parvula TaxID=236787 RepID=A0A7S2FW97_9STRA)

HSP 1 Score: 111 bits (278), Expect = 1.800e-26
Identity = 47/97 (48.45%), Postives = 68/97 (70.10%), Query Frame = 3
Query:   15 DQTMEFDIVDQYNICVDCFNHDLLESDVLVGSAQWSLLPAFKRGTMDAWIPLTAPNGFGPPNEAGEIHCVFSFVGPPGLAYPQHQPGVDSFDDSLRV 305
            D+ +  DIVD YN+ ++C++HDLL +  L+G  Q SLLP +K+G +D W+ +   N +G P+ AG++H VF F GP G+AYPQ QP VDSFD+  R+
Sbjct:  344 DEVVHLDIVDHYNLEIECYDHDLLSAPELIGKCQVSLLPVYKKGKIDTWVTIKNANDWGNPSPAGDLHIVFEFEGPMGVAYPQDQPTVDSFDERERI 440          
BLAST of mRNA_H-elongata_contig16613.4161.1 vs. uniprot
Match: A0A8J2SK96_9STRA (Hypothetical protein n=1 Tax=Pelagomonas calceolata TaxID=35677 RepID=A0A8J2SK96_9STRA)

HSP 1 Score: 107 bits (266), Expect = 7.690e-25
Identity = 43/97 (44.33%), Postives = 64/97 (65.98%), Query Frame = 3
Query:   15 DQTMEFDIVDQYNICVDCFNHDLLESDVLVGSAQWSLLPAFKRGTMDAWIPLTAPNGFGPPNEAGEIHCVFSFVGPPGLAYPQHQPGVDSFDDSLRV 305
            D  +E  +VD + + ++C++HD + SD L+G  + SLLP FKRG +D W+ +     +G P  AG+IH +F F  PPG+ YPQH PG+DSFD+  R+
Sbjct:  728 DCDVEMRVVDHHELWIECYDHDAIGSDDLIGKCKLSLLPVFKRGLIDTWVTIKEETEWGKPKPAGDIHLIFEFEAPPGIRYPQHAPGIDSFDEKDRI 824          
BLAST of mRNA_H-elongata_contig16613.4161.1 vs. uniprot
Match: A0A3R7DUE3_9STRA (Uncharacterized protein n=2 Tax=Aphanomyces astaci TaxID=112090 RepID=A0A3R7DUE3_9STRA)

HSP 1 Score: 106 bits (264), Expect = 1.350e-24
Identity = 47/96 (48.96%), Postives = 65/96 (67.71%), Query Frame = 3
Query:   18 QTMEFDIVDQYNICVDCFNHDLLESDVLVGSAQWSLLPAFKRGTMDAWIPLTAPNGFGPPNEAGEIHCVFSFVGPPGLAYPQHQPGVDSFDDSLRV 305
            QT EFD+VDQ+ + V+C++HD +  D L+G A  SLLP F+ G +D W+PLT    FG   +AGE+H   SFV   G+ YPQHQ G+D+FD+  R+
Sbjct:  431 QTFEFDVVDQFTMVVECWDHDGMGDDDLIGEASVSLLPVFRYGYIDEWVPLTFRGKFGSSQKAGEVHFELSFVAVDGIGYPQHQVGMDTFDEKERL 526          
BLAST of mRNA_H-elongata_contig16613.4161.1 vs. uniprot
Match: A0A024UIF3_9STRA (Uncharacterized protein n=2 Tax=Aphanomyces invadans TaxID=157072 RepID=A0A024UIF3_9STRA)

HSP 1 Score: 105 bits (263), Expect = 1.950e-24
Identity = 45/96 (46.88%), Postives = 64/96 (66.67%), Query Frame = 3
Query:   18 QTMEFDIVDQYNICVDCFNHDLLESDVLVGSAQWSLLPAFKRGTMDAWIPLTAPNGFGPPNEAGEIHCVFSFVGPPGLAYPQHQPGVDSFDDSLRV 305
            Q  EFD+VDQ+ + V+C++HD +  D ++G    SLLP F+ G +D W+PLT    FG   +AG++H   SFVGP G+ YPQHQ G+D+FD   R+
Sbjct:  669 QEFEFDVVDQFTMMVECWDHDGMGDDDMIGETSLSLLPVFRYGYVDEWVPLTFRGKFGSSQKAGDVHIQLSFVGPDGIGYPQHQVGMDAFDHKERL 764          
BLAST of mRNA_H-elongata_contig16613.4161.1 vs. uniprot
Match: A0A3R6WEY0_9STRA (Uncharacterized protein n=6 Tax=Aphanomyces astaci TaxID=112090 RepID=A0A3R6WEY0_9STRA)

HSP 1 Score: 104 bits (260), Expect = 4.920e-24
Identity = 47/96 (48.96%), Postives = 64/96 (66.67%), Query Frame = 3
Query:   18 QTMEFDIVDQYNICVDCFNHDLLESDVLVGSAQWSLLPAFKRGTMDAWIPLTAPNGFGPPNEAGEIHCVFSFVGPPGLAYPQHQPGVDSFDDSLRV 305
            QT EFD+VDQ+ + V+C++HD +  D L+G A  SLLP F+ G +D W PLT    FG   +AGE+H   SFV   G+ YPQHQ G+D+FD+  R+
Sbjct:  431 QTFEFDVVDQFTMVVECWDHDGMGDDDLIGEASVSLLPVFRYGYIDEWAPLTFRGKFGSSQKAGEVHFELSFVAVDGIGYPQHQVGMDTFDEKERL 526          
BLAST of mRNA_H-elongata_contig16613.4161.1 vs. uniprot
Match: W4H071_9STRA (Uncharacterized protein n=4 Tax=Aphanomyces astaci TaxID=112090 RepID=W4H071_9STRA)

HSP 1 Score: 103 bits (257), Expect = 1.240e-23
Identity = 46/96 (47.92%), Postives = 64/96 (66.67%), Query Frame = 3
Query:   18 QTMEFDIVDQYNICVDCFNHDLLESDVLVGSAQWSLLPAFKRGTMDAWIPLTAPNGFGPPNEAGEIHCVFSFVGPPGLAYPQHQPGVDSFDDSLRV 305
            Q  EFD+VDQ+ + V+C++HD +  D L+G A  SLLP F+ G +D W+PLT    FG   +AGE+H   SFV   G+ YPQHQ G+D+FD+  R+
Sbjct:  441 QMFEFDVVDQFTMVVECWDHDGMGDDDLIGEASVSLLPVFRYGYIDEWVPLTFRGKFGSSQKAGEVHFELSFVAVHGIGYPQHQVGMDTFDEKERL 536          
BLAST of mRNA_H-elongata_contig16613.4161.1 vs. uniprot
Match: A0A485KUT7_9STRA (Aste57867_12159 protein n=1 Tax=Aphanomyces stellatus TaxID=120398 RepID=A0A485KUT7_9STRA)

HSP 1 Score: 101 bits (252), Expect = 5.940e-23
Identity = 43/97 (44.33%), Postives = 64/97 (65.98%), Query Frame = 3
Query:   15 DQTMEFDIVDQYNICVDCFNHDLLESDVLVGSAQWSLLPAFKRGTMDAWIPLTAPNGFGPPNEAGEIHCVFSFVGPPGLAYPQHQPGVDSFDDSLRV 305
            DQ  +FD+VDQ+N+ ++C++HD +  D L+G    SLLP F+ G +D W PL     FG   +AGE+H   SFV P G+ YPQHQ G+++F++  R+
Sbjct:  616 DQPFDFDVVDQFNMVIECWDHDNMGDDDLIGELNLSLLPIFRYGYLDEWYPLAFHGKFGSTQKAGELHLELSFVAPQGILYPQHQVGMETFNEKERL 712          
BLAST of mRNA_H-elongata_contig16613.4161.1 vs. uniprot
Match: A0A6G0WZW8_9STRA (Uncharacterized protein n=2 Tax=Aphanomyces euteiches TaxID=100861 RepID=A0A6G0WZW8_9STRA)

HSP 1 Score: 100 bits (250), Expect = 1.110e-22
Identity = 44/96 (45.83%), Postives = 63/96 (65.62%), Query Frame = 3
Query:   18 QTMEFDIVDQYNICVDCFNHDLLESDVLVGSAQWSLLPAFKRGTMDAWIPLTAPNGFGPPNEAGEIHCVFSFVGPPGLAYPQHQPGVDSFDDSLRV 305
            +T EFD+VDQ+++ +  ++HD +  D L+G    SLLP F+ G +D W PL     FG   +AGE+H   +FVGP G+ +PQHQPG+D+FD   RV
Sbjct:  615 ETFEFDVVDQFSMEIQVWDHDSMGDDDLIGEMHLSLLPIFRYGFLDEWYPLQFKGKFGSMQKAGELHLELAFVGPDGIGFPQHQPGMDTFDHRERV 710          
BLAST of mRNA_H-elongata_contig16613.4161.1 vs. uniprot
Match: K3WZ00_GLOUD (Uncharacterized protein n=1 Tax=Globisporangium ultimum (strain ATCC 200006 / CBS 805.95 / DAOM BR144) TaxID=431595 RepID=K3WZ00_GLOUD)

HSP 1 Score: 100 bits (249), Expect = 1.520e-22
Identity = 46/97 (47.42%), Postives = 63/97 (64.95%), Query Frame = 3
Query:   12 RDQTMEFDIVDQYNICVDCFNHDLLESDVLVGSAQWSLLPAFKRGTMDAWIPLTAPNGFGPPNEAGEIHCVFSFVGPPGLAYPQHQPGVDSFDDSLR 302
             ++T  F +VDQYNI V+ ++ D +  D L+GSA  SLLP F+ G +D W+ L     FG  + AG++H + SF GPPG+AYPQHQ G+D F D  R
Sbjct:  277 ENETFTFQVVDQYNILVEVWDEDSIGDDDLIGSASVSLLPVFRYGHIDNWLNLWVKGKFGNKDPAGQLHLIMSFEGPPGIAYPQHQIGMDRFTDKER 373          
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig16613.4161.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LE37_ECTSI4.100e-4272.92Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
A0A7S2FW97_9STRA1.800e-2648.45Hypothetical protein n=1 Tax=Florenciella parvula ... [more]
A0A8J2SK96_9STRA7.690e-2544.33Hypothetical protein n=1 Tax=Pelagomonas calceolat... [more]
A0A3R7DUE3_9STRA1.350e-2448.96Uncharacterized protein n=2 Tax=Aphanomyces astaci... [more]
A0A024UIF3_9STRA1.950e-2446.88Uncharacterized protein n=2 Tax=Aphanomyces invada... [more]
A0A3R6WEY0_9STRA4.920e-2448.96Uncharacterized protein n=6 Tax=Aphanomyces astaci... [more]
W4H071_9STRA1.240e-2347.92Uncharacterized protein n=4 Tax=Aphanomyces astaci... [more]
A0A485KUT7_9STRA5.940e-2344.33Aste57867_12159 protein n=1 Tax=Aphanomyces stella... [more]
A0A6G0WZW8_9STRA1.110e-2245.83Uncharacterized protein n=2 Tax=Aphanomyces euteic... [more]
K3WZ00_GLOUD1.520e-2247.42Uncharacterized protein n=1 Tax=Globisporangium ul... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig16613contigH-elongata_contig16613:6607..7162 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Hectar predicted targeting categorysignal peptide
Exons2
Model size308
Cds size306
Stop0
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929972.9540646-CDS-H-elongata_contig16613:6606..67681622929972.9540646-CDS-H-elongata_contig16613:6606..6768Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig16613 6607..6768 -
1691679230.0583515-CDS-H-elongata_contig16613:6606..67681691679230.0583515-CDS-H-elongata_contig16613:6606..6768Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig16613 6607..6768 -
1622929972.9696374-CDS-H-elongata_contig16613:7018..71621622929972.9696374-CDS-H-elongata_contig16613:7018..7162Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig16613 7019..7162 -
1691679230.072501-CDS-H-elongata_contig16613:7018..71621691679230.072501-CDS-H-elongata_contig16613:7018..7162Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig16613 7019..7162 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig16613.4161.1prot_H-elongata_contig16613.4161.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig16613 6607..7162 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig16613.4161.1

>prot_H-elongata_contig16613.4161.1 ID=prot_H-elongata_contig16613.4161.1|Name=mRNA_H-elongata_contig16613.4161.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=102bp
MTLSVIRRWSSTSWISTIYVWTASITICLRATSSSAARSGASSQLLREGP
WTRGYRLLPPTVLDRQTRPEKSTVSSPSWDRLGLRILNTNLVLIASTTRC
ES
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mRNA from alignment at H-elongata_contig16613:6607..7162-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig16613.4161.1 ID=mRNA_H-elongata_contig16613.4161.1|Name=mRNA_H-elongata_contig16613.4161.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=556bp|location=Sequence derived from alignment at H-elongata_contig16613:6607..7162- (Himanthalia elongata Himel1 dioecious)
ATGACTCTGTCCGTGATCAGACGATGGAGTTCGACATCGTGGATCAGTAC AATATATGTGTGGACTGCTTCAATCACGATTTGCTTGAGAGCGACGTCCT CGTCGGCAGCGCGCAGTGGAGCCTCCTCCCAGCTTTTAAGAGAGGTGAGC TAGGGGCGCAGTCAACATACCCCTCCGAGCCGTGCTATACGCATTTTGAA TTGGACCTCTGCTGGATCACTATTGATGTTGTTGTTTTTGTTGTTATTAG CTACGCAGAGCATGTCATGTCTCCGCGATATCCCTAGAGGAGGACTGAGA TGAATAACCGACGCACCAATCGAAAGCCGCTGAAAATCTAAGGGAGGGGT GCAGCGCTTCCTCCCGTTTCCTCTACTGAATGGTTTGAGGGTAGGGACCA TGGACGCGTGGATACCGCTTACTGCCCCCAACGGTTTTGGACCGCCAAAC GAGGCCGGAGAAATCCACTGTGTCTTCTCCTTCGTGGGACCGCCTGGGCT TGCGTATCCTCAACACCAACCTGGTGTTGATAGCTTCGACGACTCGCTGC GAGTCA
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Coding sequence (CDS) from alignment at H-elongata_contig16613:6607..7162-

>mRNA_H-elongata_contig16613.4161.1 ID=mRNA_H-elongata_contig16613.4161.1|Name=mRNA_H-elongata_contig16613.4161.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=612bp|location=Sequence derived from alignment at H-elongata_contig16613:6607..7162- (Himanthalia elongata Himel1 dioecious)
ATGACTCTGTCCGTGATCAGACGATGGAGTTCGACATCGTGGATCAGTAC
AATATATGTGTGGACTGCTTCAATCACGATTTGCTTGAGAGCGACGTCCT
CGTCGGCAGCGCGCAGTGGAGCCTCCTCCCAGCTTTTAAGAGAGATGACT
CTGTCCGTGATCAGACGATGGAGTTCGACATCGTGGATCAGTACAATATA
TGTGTGGACTGCTTCAATCACGATTTGCTTGAGAGCGACGTCCTCGTCGG
CAGCGCGCAGTGGAGCCTCCTCCCAGCTTTTAAGAGAGGGACCATGGACG
CGTGGATACCGCTTACTGCCCCCAACGGTTTTGGACCGCCAAACGAGGCC
GGAGAAATCCACTGTGTCTTCTCCTTCGTGGGACCGCCTGGGCTTGCGTA
TCCTCAACACCAACCTGGTGTTGATAGCTTCGACGACTCGCTGCGAGTCA
GGACCATGGACGCGTGGATACCGCTTACTGCCCCCAACGGTTTTGGACCG
CCAAACGAGGCCGGAGAAATCCACTGTGTCTTCTCCTTCGTGGGACCGCC
TGGGCTTGCGTATCCTCAACACCAACCTGGTGTTGATAGCTTCGACGACT
CGCTGCGAGTCA
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