mRNA_H-elongata_contig16601.4156.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig16601.4156.1
Unique NamemRNA_H-elongata_contig16601.4156.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
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BLAST of mRNA_H-elongata_contig16601.4156.1 vs. uniprot
Match: A0A6H5JZJ2_9PHAE (S5A_REDUCTASE domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5JZJ2_9PHAE)

HSP 1 Score: 265 bits (677), Expect = 3.540e-85
Identity = 134/196 (68.37%), Postives = 149/196 (76.02%), Query Frame = 1 
Query:    1 QGVLLSMVMSLDGFRVREHFVSYGYGFSVALQAAAALWLFREGLHPLSVLHAVGLVAYGLRLVIFCRWRDSLA-FPGAR----QITQSSPGRPYKFWVICSVLYALLALPTVYVQRRLPAPEASYRGVLQAGLATMAAGLVVEGVADWQKSKFKMKKRDSFISSGLFRFSRHANYFGEVVFWAGVWIAATPSFTKW 573
            QGVLLSMV S+DGFR+REHFVSYGYGFSVALQAA A WLFR+ LH LS LHA GLVAYGLRL  FC WRD+L+ F   R    Q  + + G PY FW ICS+LYA LALPTVY  RRLPA E SY GV QAGLA MA GL+VE VAD QKS FK K  D+F S+GL+RFSRH NY GE VFW G W+AA P++TKW
Sbjct:  126 QGVLLSMVTSIDGFRIREHFVSYGYGFSVALQAAGAAWLFRDKLHTLSALHAAGLVAYGLRLASFCGWRDTLSCFQNRRKRPTQPKKQNAGPPYTFWGICSMLYAFLALPTVYALRRLPAAEGSYVGVSQAGLAVMAVGLLVESVADLQKSLFKKKSPDTFCSTGLYRFSRHPNYLGEAVFWTGAWLAAIPAYTKW 321
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BLAST of mRNA_H-elongata_contig16601.4156.1 vs. uniprot
Match: A0A7S2WAP1_9STRA (Hypothetical protein n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2WAP1_9STRA)

HSP 1 Score: 114 bits (284), Expect = 5.520e-27
Identity = 78/202 (38.61%), Postives = 106/202 (52.48%), Query Frame = 1 
Query:    7 VLLSMVMSLDGFRVREHFVSYGYGFSVALQAAAALWLF--------REGLHPLSVLHAVGLVAYGLRLVIFCRWRDSLAFPGARQITQSSPGR-----PYKFWVICSVLYALLALPTVYVQRRLPAPEASYRGVLQAGLATMAAGLVVEGVADWQKSKFKMKKRDSFISSGLFRFSRHANYFGEVVFWAGVWIAATPSFTKW 573
            VLLS+  S  GF     FVS GYG S+A    A L           + GL PL++LHA GL+ YGLRL  F  WR  +  P  RQ  ++   +         W+  S+L+  +  P  Y  R   AP AS   V   G+A +  G+V+E VAD QK+ +K +  +SF S GLFRF RH NY GE++ + G ++AA  +  KW
Sbjct:   88 VLLSLASSSLGFSSVTSFVSTGYGLSMASMGVATLAAVLSKGGGGDKGGLDPLAMLHAGGLLVYGLRLFTFLAWRSRI--PQIRQRLRAVDAKVTGASKAVLWLCVSLLFPAMFSPVHYACRA-GAPLASQPSVQGTGIAVLWLGVVLEAVADLQKAVWKHRS-NSFCSVGLFRFVRHPNYLGEILVYCGSYLAAIQAMEKW 285
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BLAST of mRNA_H-elongata_contig16601.4156.1 vs. uniprot
Match: A0A847WWZ3_9HYPH (DUF1295 domain-containing protein n=1 Tax=Phyllobacteriaceae bacterium TaxID=1871068 RepID=A0A847WWZ3_9HYPH)

HSP 1 Score: 111 bits (278), Expect = 1.120e-26
Identity = 73/197 (37.06%), Postives = 102/197 (51.78%), Query Frame = 1 
Query:    7 VLLSMVMSLDGFRVREHFVSYGYGFSVALQAAAALWLFREGLHPLSVLHAVGLVAYGLRLVIFCRWRDSLAFPGARQITQS------SPGRPYKFWVICSVLYALL---ALPTVYVQRRLPAPEASYRGVLQAGLATMAAGLVVEGVADWQKSKFKMKKRDSFISSGLFRFSRHANYFGEVVFWAGVWIAATPSFTK 570
            ++ ++V+S  GFR  + F+S  YG S+A QA     L        + L AV LVAYGLRL      R+  +    R    S      + G     W+  ++LY L+   AL T+  Q      + S    L  GL  MA GL +EGV DWQKS  K K+ D F+S+GL+R  R  NYFGE++FWAGVW++   ++  
Sbjct:   17 LVTALVVSTLGFRRTDWFISVSYGLSIAAQAIIFPLLLLGRWDIWAGLQAVLLVAYGLRLTTHILTREKKSSYAKRMEGSSMRSGKMNVGMKATMWLSVALLYVLMYSPALMTLNAQA-----QGSSMASLPLGLIIMALGLFMEGVGDWQKSAAKDKRPDDFVSTGLYRIVRFPNYFGEMLFWAGVWVSGISAYAS 208
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BLAST of mRNA_H-elongata_contig16601.4156.1 vs. uniprot
Match: A0A7S1H721_HEMAN (Hypothetical protein n=1 Tax=Hemiselmis andersenii TaxID=464988 RepID=A0A7S1H721_HEMAN)

HSP 1 Score: 113 bits (283), Expect = 1.650e-26
Identity = 65/192 (33.85%), Postives = 102/192 (53.12%), Query Frame = 1 
Query:   13 LSMVMSLDGFRVREHFVSYGYGFSVALQAAAALWLFREGLHPLSVLHAVGLVAYGLRLVIFCRWRDSLAFPGARQITQSSPGRPYKF------WVICSVLYALLALPTVYVQRRLPAPEASYRGVLQAGLATMAAGLVVEGVADWQKSKFKMKKRDSFISSGLFRFSRHANYFGEVVFWAGVWIAATPSFTK 570
            +S++ S  GF    +FV YGY  S+    +  L  F       +V HAVG++A+G R++ F  +R+  A+   ++  + +  + + F      W+  S+ YALL  P ++  +      +S   + + GL   A GL++E  +D  KS FK    +SF+SSGL+RF RH NYFGEV+FW G + A   S T 
Sbjct:   51 VSLIASAVGFISAVYFVGYGYALSMIALGSVTLQRFMATASQPAVYHAVGVIAWGARILTFLLYREFFAWKQLKERNRET-NKKFAFTAKVSTWLFVSIFYALLFSPVLFHLQA----ASSIPVLTKTGLGVAAVGLLIESQSDAAKSSFKQSSPESFMSSGLYRFCRHPNYFGEVIFWGGSYAAGVGSLTS 237
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BLAST of mRNA_H-elongata_contig16601.4156.1 vs. uniprot
Match: A0A7S0TGM9_HEMAN (Hypothetical protein (Fragment) n=1 Tax=Hemiselmis andersenii TaxID=464988 RepID=A0A7S0TGM9_HEMAN)

HSP 1 Score: 113 bits (283), Expect = 8.600e-26
Identity = 65/192 (33.85%), Postives = 102/192 (53.12%), Query Frame = 1 
Query:   13 LSMVMSLDGFRVREHFVSYGYGFSVALQAAAALWLFREGLHPLSVLHAVGLVAYGLRLVIFCRWRDSLAFPGARQITQSSPGRPYKF------WVICSVLYALLALPTVYVQRRLPAPEASYRGVLQAGLATMAAGLVVEGVADWQKSKFKMKKRDSFISSGLFRFSRHANYFGEVVFWAGVWIAATPSFTK 570
            +S++ S  GF    +FV YGY  S+    +  L  F       +V HAVG++A+G R++ F  +R+  A+   ++  + +  + + F      W+  S+ YALL  P ++  +      +S   + + GL   A GL++E  +D  KS FK    +SF+SSGL+RF RH NYFGEV+FW G + A   S T 
Sbjct:   44 VSLIASAVGFISAVYFVGYGYALSMIALGSVTLQRFMATASQPAVYHAVGVIAWGARILTFLLYREFFAWKQLKERNRET-NKKFAFTAKVSTWLFVSIFYALLFSPVLFHLQA----ASSIPVLTKTGLGVAAVGLLIESQSDAAKSSFKQSSPESFMSSGLYRFCRHPNYFGEVIFWGGSYAAGVGSLTS 230
[Close]
BLAST of mRNA_H-elongata_contig16601.4156.1 vs. uniprot
Match: A0A1Q3YUG8_9HYPH (S5A_REDUCTASE domain-containing protein n=2 Tax=Devosiaceae TaxID=2831106 RepID=A0A1Q3YUG8_9HYPH)

HSP 1 Score: 109 bits (272), Expect = 9.740e-26
Identity = 79/195 (40.51%), Postives = 107/195 (54.87%), Query Frame = 1 
Query:    7 VLLSMVMSLDGFRVREHFVSYGYGFSVALQAAAALWLFREGLHPLSVLHAVGLVAYGLRLVIFCRWRDSLAFPGARQITQS---SPG--RPYKF--WVICSVLYALLALPTVY--VQRRLPAPEASYRGVLQAGLATMAAGLVVEGVADWQKSKFKMKKRDSFISSGLFRFSRHANYFGEVVFWAGVWIAATPSF 564
            +LL + +S  GFR  + F+S GYGF +A QA     L+RE L    V   V L AYGLRL  +   R+  A   AR++  S   S G   P KF  WV  S LY  +A P ++  VQ    A   S    L AG+A M AGL++E +ADWQKS+FK     +F+  GL+   R  NYFGE++FW G ++A   ++
Sbjct:   18 LLLCLAISALGFRRVDWFISLGYGFFIAAQALLFALLYREALSFWLVAQLVLLFAYGLRLGGYLIGRER-ASSFARELEASRARSAGIAGPVKFAIWVSVSALYVAMASPALFGLVQAAAGAAVPS----LPAGVAIMLAGLLLEALADWQKSRFKAANPRAFMRQGLYAIVRCPNYFGEMLFWLGGFVAGLSAY 207
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BLAST of mRNA_H-elongata_contig16601.4156.1 vs. uniprot
Match: A0A6A8M7N8_9FIRM (DUF1295 domain-containing protein n=2 Tax=Eubacteriales Family XIII. Incertae Sedis TaxID=543314 RepID=A0A6A8M7N8_9FIRM)

HSP 1 Score: 105 bits (262), Expect = 2.250e-24
Identity = 70/193 (36.27%), Postives = 97/193 (50.26%), Query Frame = 1 
Query:   10 LLSMVMSLDGFRVREHFVSYGYGFSVALQAAAALWLFREGLHPLSVLHAVGLVAYGLRLVIFCRWRDSLAFPGARQITQSSPGRPYKF------WVICSVLYALLALPTVYVQRRLPAPEASYRGVLQAGLATMAAGLVVEGVADWQKSKFKMKKRDSFISSGLFRFSRHANYFGEVVFWAGVWIAATPSFTK 570
            +L+M+ S  GFR    F+S GYG +VAL  A  L+LF   L   ++L  V  + YG RL  +  +RD       R   +        F      W+  ++LYAL   P  +   RL     +  G   AGL   AAGL++E  AD QK+K K K    F+ +GLFR  R  NYFGE+VFW GV+I+    ++ 
Sbjct:    9 VLAMIASSCGFRKYVWFISLGYGAAVALIGAGLLFLFSRVLTVGTILECVLFIVYGCRLSGYLAYRDLKTAYAGRMKGEVKTNDGVSFAAKMGIWISAAILYALQTSPVTF---RLMEGSGT-DGFCMAGLVISAAGLILETTADLQKNKAKKKNPRRFVDTGLFRLVRCPNYFGEMVFWTGVFISGLNVYSS 197
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BLAST of mRNA_H-elongata_contig16601.4156.1 vs. uniprot
Match: A0A318TEG8_9BRAD (Steroid 5-alpha reductase family enzyme n=1 Tax=Rhodopseudomonas faecalis TaxID=99655 RepID=A0A318TEG8_9BRAD)

HSP 1 Score: 102 bits (255), Expect = 2.710e-23
Identity = 73/194 (37.63%), Postives = 96/194 (49.48%), Query Frame = 1 
Query:    7 VLLSMVMSLDGFRVREHFVSYGYGFSVALQAAAALWLFREGLHPLSVLHAVGLVAYGLRLVIFCRWRDSLAFPGARQITQSSPGRP--------YKFWVICSVLYALLALPTVYVQRRLPAPEASYRGVLQAGLATMAAGLVVEGVADWQKSKFKMKKRDSFISSGLFRFSRHANYFGEVVFWAGVWIAATPSF 564
            +LL +V+S  G +   +FVS  Y  ++  QA     +  +     ++L  V L+ YG+RL  F   R SL  P   Q+  S   R            W   SVLY LLALP         A E++    L  G+  M AGLV+E VADWQKS FK  +   F   GL+R  R  NYFGE+VFW GVWIA   ++
Sbjct:   12 LLLCLVVSAPGLKRVYYFVSLCYAGAITAQAVLIWIVHHDTASGFTLLMLVLLMLYGVRLGGFLLRRASL--PPYAQVLASVEQRTAGMTDRQKLMIWGGVSVLYTLLALPAWLAASAQAAGESTMSVPL--GVLVMIAGLVIEAVADWQKSSFKAAQPTQFCDIGLYRMVRFPNYFGEMVFWLGVWIAGISAY 201
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BLAST of mRNA_H-elongata_contig16601.4156.1 vs. uniprot
Match: U2TBT0_9ACTN (PF06966 family protein n=2 Tax=Olsenella profusa TaxID=138595 RepID=U2TBT0_9ACTN)

HSP 1 Score: 99.8 bits (247), Expect = 4.090e-22
Identity = 74/194 (38.14%), Postives = 99/194 (51.03%), Query Frame = 1 
Query:    7 VLLSMVMSLDGFRVREHFVSYGYGFSVALQAAAALWLFREGLHPLSVLHAVGLVAYGLRLVIFC--RWRDSLAFP--GARQITQSSP-GRPYKF--WVICSVLYALLALPTVY-VQRRLPAPEASYRGVLQAGLATMAAGLVVEGVADWQKSKFKMKKRDSFISSGLFRFSRHANYFGEVVFWAGVWIAATPSF 564
            V+LS+V+S  GF     F+S GYG S+A      L  F   L P SVL  + L+AYG RL I+   R R S A+    A Q+   S  G P +   WV C+V+ A  A P +  +Q   PA   S       GLA M  G+V+E +AD QKS  K  +   F   GL+ F R  NY GEV+ W GV+++    +
Sbjct:   14 VILSLVVSSIGFHRFVWFISLGYGLSIAAGCMLLLAWFHASLGPASVLMCLLLMAYGPRLAIYLLVRERRSAAYRHVAATQVNDGSDLGLPIQMVIWVACAVMCACQASPVLSRLQAGSPADAPSL-----VGLALMCGGIVLESIADLQKSVQKRTRPGRFCDRGLYSFVRCPNYLGEVLMWTGVFVSGAAVY 202
[Close]
BLAST of mRNA_H-elongata_contig16601.4156.1 vs. uniprot
Match: UPI001EE98285 (DUF1295 domain-containing protein n=1 Tax=Rhodopseudomonas sp. HC1 TaxID=2897386 RepID=UPI001EE98285)

HSP 1 Score: 99.4 bits (246), Expect = 5.720e-22
Identity = 63/193 (32.64%), Postives = 99/193 (51.30%), Query Frame = 1 
Query:    7 VLLSMVMSLDGFRVREHFVSYGYGFSVALQAAAALWLFREGLHPLSVLHAVGLVAYGLRLVIFCRWRD-----SLAFPGA-RQITQSSPGRPYKFWVICSVLYALLALPTVYVQRRLPAPEASYRGVLQAGLATMAAGLVVEGVADWQKSKFKMKKRDSFISSGLFRFSRHANYFGEVVFWAGVWIAATPSFT 567
            +L+S+ +S  GFR   +FVS  Y  ++A Q+   + +F   +    +L  + L+ YG+RL  F   R+     +    GA R+       +    W+  S+L+ LL LP + V       E  +      G+  M AGLV+E VADWQKS++K      +   GL+R  R  NYFGE++FW GVW+A   +++
Sbjct:   12 LLISLAVSAAGFRRVYYFVSLCYAGAIAAQSLVFMLVFYASIEGWVLLMMLALLVYGVRLGAFLAVRERNPGYAKELAGAERRTADVLLWQKGAIWLGVSLLFTLLFLPALLVASL--QAEGVWPASAPLGVMLMTAGLVIESVADWQKSRYKQANPTRYCDVGLYRMVRCPNYFGEMLFWFGVWVAGLSAYS 202
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig16601.4156.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5JZJ2_9PHAE3.540e-8568.37S5A_REDUCTASE domain-containing protein n=2 Tax=Ec... [more]
A0A7S2WAP1_9STRA5.520e-2738.61Hypothetical protein n=1 Tax=Rhizochromulina marin... [more]
A0A847WWZ3_9HYPH1.120e-2637.06DUF1295 domain-containing protein n=1 Tax=Phylloba... [more]
A0A7S1H721_HEMAN1.650e-2633.85Hypothetical protein n=1 Tax=Hemiselmis andersenii... [more]
A0A7S0TGM9_HEMAN8.600e-2633.85Hypothetical protein (Fragment) n=1 Tax=Hemiselmis... [more]
A0A1Q3YUG8_9HYPH9.740e-2640.51S5A_REDUCTASE domain-containing protein n=2 Tax=De... [more]
A0A6A8M7N8_9FIRM2.250e-2436.27DUF1295 domain-containing protein n=2 Tax=Eubacter... [more]
A0A318TEG8_9BRAD2.710e-2337.63Steroid 5-alpha reductase family enzyme n=1 Tax=Rh... [more]
U2TBT0_9ACTN4.090e-2238.14PF06966 family protein n=2 Tax=Olsenella profusa T... [more]
UPI001EE982855.720e-2232.64DUF1295 domain-containing protein n=1 Tax=Rhodopse... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig16601contigH-elongata_contig16601:344..4616 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score257.3
Seed ortholog evalue5.5e-66
Seed eggNOG ortholog2880.D8LD60
EggNOG free text desc.oxidoreductase activity, acting on the CH-CH group of donors
EggNOG OGsCOG3752@1,KOG4650@2759
COG Functional cat.O
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionProtein of unknown function DUF1295
Ec32 orthologEc-11_000580.1
Exons6
Model size576
Cds size558
Stop1
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929972.328545-CDS-H-elongata_contig16601:343..4431622929972.328545-CDS-H-elongata_contig16601:343..443Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig16601 344..443 -
1691679229.7827308-CDS-H-elongata_contig16601:343..4431691679229.7827308-CDS-H-elongata_contig16601:343..443Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig16601 344..443 -
1622929972.3440604-CDS-H-elongata_contig16601:1150..12551622929972.3440604-CDS-H-elongata_contig16601:1150..1255Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig16601 1151..1255 -
1691679229.7950253-CDS-H-elongata_contig16601:1150..12551691679229.7950253-CDS-H-elongata_contig16601:1150..1255Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig16601 1151..1255 -
1622929972.3557465-CDS-H-elongata_contig16601:2004..20141622929972.3557465-CDS-H-elongata_contig16601:2004..2014Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig16601 2005..2014 -
1691679229.8031058-CDS-H-elongata_contig16601:2004..20141691679229.8031058-CDS-H-elongata_contig16601:2004..2014Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig16601 2005..2014 -
1622929972.3678956-CDS-H-elongata_contig16601:2795..29261622929972.3678956-CDS-H-elongata_contig16601:2795..2926Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig16601 2796..2926 -
1691679229.8114386-CDS-H-elongata_contig16601:2795..29261691679229.8114386-CDS-H-elongata_contig16601:2795..2926Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig16601 2796..2926 -
1622929972.381618-CDS-H-elongata_contig16601:3857..39911622929972.381618-CDS-H-elongata_contig16601:3857..3991Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig16601 3858..3991 -
1691679229.8194778-CDS-H-elongata_contig16601:3857..39911691679229.8194778-CDS-H-elongata_contig16601:3857..3991Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig16601 3858..3991 -
1622929972.3924482-CDS-H-elongata_contig16601:4520..45981622929972.3924482-CDS-H-elongata_contig16601:4520..4598Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig16601 4521..4598 -
1691679229.8285768-CDS-H-elongata_contig16601:4520..45981691679229.8285768-CDS-H-elongata_contig16601:4520..4598Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig16601 4521..4598 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929972.430205-UTR-H-elongata_contig16601:4598..46161622929972.430205-UTR-H-elongata_contig16601:4598..4616Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig16601 4599..4616 -
1691679229.8374934-UTR-H-elongata_contig16601:4598..46161691679229.8374934-UTR-H-elongata_contig16601:4598..4616Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig16601 4599..4616 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig16601.4156.1prot_H-elongata_contig16601.4156.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig16601 344..4598 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig16601.4156.1

>prot_H-elongata_contig16601.4156.1 ID=prot_H-elongata_contig16601.4156.1|Name=mRNA_H-elongata_contig16601.4156.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=186bp
MVMSLDGFRVREHFVSYGYGFSVALQAAAALWLFREGLHPLSVLHAVGLV
AYGLRLVIFCRWRDSLAFPGARQITQSSPGRPYKFWVICSVLYALLALPT
VYVQRRLPAPEASYRGVLQAGLATMAAGLVVEGVADWQKSKFKMKKRDSF
ISSGLFRFSRHANYFGEVVFWAGVWIAATPSFTKW*
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mRNA from alignment at H-elongata_contig16601:344..4616-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig16601.4156.1 ID=mRNA_H-elongata_contig16601.4156.1|Name=mRNA_H-elongata_contig16601.4156.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=4273bp|location=Sequence derived from alignment at H-elongata_contig16601:344..4616- (Himanthalia elongata Himel1 dioecious)
CAGGGAGTGCTGTTGTCGATGGTGATGTCCCTCGATGGCTTCCGCGTGAG
AGAACACTTCGTCAGCTACGGCTACGGCTTCTCCGTCGCGCTGCAGGTAA
TAGTGTAGTGTATAATAGTTTTCTGTATTATAATAGTGTAGTGTATAATA
GTTTTCTGTATTGTTATAGTGTAGTGTATAATAGTTTTCTGTATTGTAAT
AGTATAGTGTATATTAGTTTTTGTATTATAATAGTGTAGTGTATAATAGT
TTTCTGTATTATAATAGTGTAGTGTATAATAGTTTTCTGTATTGTAATAG
TGTAGTGTATAATAGTTTTCTGTATTGTAATAGTGTAGTGTATAATAGTT
TTCTGTATTATAATAGTGTAGTGTATAATAGTTTTCTGTATTGTAATACT
GCACTGTACTATCCTGTAGTGAGATGTCTTGTCGTCTTGTAAGCAGCACC
GACTGGGGGTAACAAAAATAATTAACACTAAAAATCGCTCACACGGAAAA
GACCAAAGTGACGTACGCTGTATTCCCCCCCCCCCCCACCACCACCTCCC
CAAGCAAAATATCTTCACACAAAAACGAATCGGACTCGCTCTTCGCCCCT
CTTGCATCTTTTCTCAACGTAAAAGGCCGCCGCCGCGTTGTGGCTGTTCC
GTGAAGGCTTACACCCACTCTCAGTTCTTCACGCCGTGGGGTTGGTGGCG
TACGGACTCCGCCTGGTCATCTTTTGTCGCTGGAGAGACTCGTTGGCGTT
TCCAGGAGCGTAGAAGGTGAACAACGTCAGGGGGTGGGGGGACAAGAAAT
ATTTCTCCCCATGGATAACCCCCTCAGCCCCCCCTACCGTCCCAACCCAT
TTATCGACAGCATGTCAAACATAAATGCTGCAAACATTTTTTCTAGAGAA
AAGACGAGCGAGGCGACCTTCTCAAAATCCGCCTTTTTTGTTTGGTGCTG
CTTTGAGTGAGTCTAGGGTTATTTGCCGAAAACATGAGCGGGGACACCCA
TCCCCTATCCCCTCGGAGGGAGGGGGGATTGTCCCTAGTCAATGTTTGGT
GCGGGACGGGGGGAGGTAATGAAGTCTTATGCACCACCGGTCTGCGTTCG
TTTGCTTGCTCGTCGGCGCGGCGAATCGATAATGTATCAATTTGAGATAT
TTTTCTATCGAGTACTTCAGACGTGAATGCTATAATGTTTGGACAGACGA
GAACGCCCCTCCTCCCCCGCTTCCCGAGGGGTCAAACTTCAGTTGTCATC
TTCCCGCTTAGCGCCTCAGCGACGCGGCCCATATTATGAAACAATGCGTA
GTCGGAAATATCTCGTCGATAATTCTTTACAAAGGTACCGTACTCCACAA
TGAGGATATAAGTCAGGGTTGGAAGTCTGAGTTTTATCACCCGGGTTTCC
TGGAGGCGTTCTCTTCGATACAAATTCGGTACCCGTGAGCGATTCGGGTC
TGTTGTGCTGGAATCGGAAAATATGGCGCTTATTTTACTTCACCTAGGGT
CCATGCTTTTGCTGCATCTGCCCACTGCTCGGCGCGAAACAAACGATGAT
AGGTTTACTCCCTCCTTCCAGAACCAAGTGTCTTGCTGCACATCTATCCG
CTGATACTTCACAAGCGCCGATTTTTTTCTTGTTTCTCCCCGTCGTCCCT
GCGTCTCTCGGTGTGAGTCGGTGCTTCTATGAATTTGAAGGCGTCAGATC
ACGCAGAGCTCCCCGGGCCGCCCTTACAAGTTCTGGGTCATATGCTCCGT
GCTGTACGCCCTCCTAGCCCTGCCGACCGTATACGTTCAGCGCCGACTAC
CGGCCCCCGAGGCAAGTTATCGTGATTCTTCGGAAGAACACCCACCCCCT
CCCTGTCACCCTTATTTTTTACCAACGATCTAACCAACAATGCGAAACGA
CCATACGATATAAGATAAAGAAATGCCTTGTCGAAAACTCTTTAGAAAAA
TGTGCTATTTTTATTCCTTCCCATAGGCAGTGACTACCAGTAGACTATAT
GTTATACCAGTATATGTTAAAGAAACGAGTTGGGGGGGGTTCGGGGAGAA
GATATATGTCTGTCCTCGAATGCGATACCGCTAGAGGTAAGGGGAGGGGT
TGTTATCGTCCAATATGGCGCAGGGCGATAGTGAGCGGGGCTAGGGAAAG
GTCCTGTTGGCTACAGCAGACAACGTCGCATACCAACAATCTCCGGAGGG
TGTAACAGCCCGGCCCTCGGTATCCTGCCAAGAGAGGATACTGCTTGGGC
CATCTTTGAGTTGGCGGCGGGAAGGAGAACTTAATGTTCTAGTGATTCGC
CGATTTTTAAGTGCGAGGGAGGCCGGGTGAGAAGGGAAATATGACGGCTA
TTTCTTTGAGCTTAAGCGTGGAGGGGGGGGGGGGTGATATCAAAATACCA
TCTCCCGGGAGCGGTCAATATATCCCCTTATATATTATTAGTAGGTTAGA
TCGCCTCCAAATATGCTTTTTTAACAGGGAATGAATACAATGCTTTCCTG
TAGGGACTGTTTTGTATCACCCTCTCCAGGAACTCGGACCGAGCTTACCT
TCCCTTCCCCACTATATCGGTGAACCCACTCTATCTCTAGCAAATGGTGC
AGGCGGCGTGCTGTGCGCCGGTGCGCTGTGACAGGGGCTGGTTAGCAAGG
GAGTGCTTTTCGAAAATGTTTCCATTATACAAAAGAAAATGTGTGGCGCA
CTTTATCAATACATATTTCGTGAAGTTACACTCCCATTTAGCGAAGACAG
AAGCCTTCCCCCCAGTTCGACGCATGCCTCATTCACGCCACGCTGTTTCA
ATGCATGCCAAACGTGGCGGACCATTCGCGCTGGGCAATGATCCGATTTT
CTCTGTTATTAATGGTATGTATAGGACGCGGGGAATTCAGATTCAGATCA
GATTTTGCTTAGGTTTTGCACCTGATCTCTAAAATCAGTTCCGAGTAATG
CATTGGTAACTTGATCCGTTGAACTTACCGTACGTACCTGAACGGAGCCC
CCTTGTTTTATAAGAAACCCCGAGAAGGGAAATACCCCGCATGTCCCCTT
CGTTTCATGGAGATGACTTGGTGCTGCATTGGATGGCACTCTCTAGCTGA
ATGGATGAATGAATGAATGAACGAATGAAATTGCTACTCTAGTGTATTGG
GTATAAAGTAGTGTCTCTTAGGTCTGCTGGGCGATGAGTGGAAGAGGATA
GGGAGAGGGGGGTACCGGCCAAAGTGATGAGGCCAAGAACCATTATAAAC
TATAATCGAGGGCTGCGGCCGTTTTAATGCAGACCTTTGTCGCTTCTTGA
TTTTAATCGCGCTGTTTCGTGCGGGGCGGTGCCTTCGTCGGCAGGGTTGG
TTGGGCGTGAGTCAGGCTGGACTTGCAACCATGGCAGCAGGGCTCGTCGT
GGAAGGGGTCGCAGATTGGCAGAAGTCAAAGTTCAAGATGAAAAAGCGGG
ACAGCTTCATCAGCAGGTGGGAGAGCCTGATCAGCGTGAAACCTTTGGGT
GGGGGGGATTCGCTTGTTTTGTTTTATATACTTGACTGGAAAAGGAGACG
GATAATATTTTTTGTTCTAGAAAGGCTGATTTAAAAGTCCTCCTCTCTCC
CCCGCGCGATCATGAGATGGGGTAATATTCCGCGAGGAGATATGGTTTGT
TTTACCGCGAGAAATAATTGGACGAAATAAAACAAATCGTCACGGCGCGA
CCGACCAATCAATCTCTACATCGATTTCCGCACATCACGGGGAGAAGACC
TTCCTTTGGGAACTTTCTATCACTTTTCTCTTTACCACGGCATCGGAAGA
TAATGTCTTAATGGTATGGAAGGCTTTTGGTGGCGTCTTTCCATAGCCAC
ACGAGTTAATGAAAAGCTGATATAAGGAATCAGGAGAAAATGGAGTGGAT
CGGCGGAGGGTCGGGGGGTTCCTCGGAGGGGAGCGTTTTTTCAACTTAGT
ACTGATGAGTGAGGAGACGGGTGGGGGGATAGTCGGGGCGAGGAACTGTA
CTGCAAGCCCTATTTTTTTTCATCTATCTCCCTCACCCGTTAGGTTGTTA
AGATGTGCCGCATGACATGGCAAGTCGCATCGTATGATCGCATCCCATCG
CCTGAAGCACGTTGCCGCCACACGAAATGTTTGCTTGCCTTTTCATCTAT
TATAATCCTCTTCTCCTCGGCAGCGGCCTCTTCCGCTTCTCCCGGCACGC
CAACTACTTCGGAGAGGTCGTGTTCTGGGCAGGGGTCTGGATCGCTGCGA
CCCCTTCCTTCACCAAGTGGTGA
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Coding sequence (CDS) from alignment at H-elongata_contig16601:344..4616-

>mRNA_H-elongata_contig16601.4156.1 ID=mRNA_H-elongata_contig16601.4156.1|Name=mRNA_H-elongata_contig16601.4156.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=1116bp|location=Sequence derived from alignment at H-elongata_contig16601:344..4616- (Himanthalia elongata Himel1 dioecious)
ATGGTGATGTCCCTCGATGGCTTCCGCGTGAGAGAACACTTCGTCAGCTA
CGGCTACGGCTTCTCCGTCGCGCTGCAGATGGTGATGTCCCTCGATGGCT
TCCGCGTGAGAGAACACTTCGTCAGCTACGGCTACGGCTTCTCCGTCGCG
CTGCAGGCCGCCGCCGCGTTGTGGCTGTTCCGTGAAGGCTTACACCCACT
CTCAGTTCTTCACGCCGTGGGGTTGGTGGCGTACGGACTCCGCCTGGTCA
TCTTTTGTCGCTGGAGAGACTCGTTGGCGTTTCCAGGAGCGCCGCCGCCG
CGTTGTGGCTGTTCCGTGAAGGCTTACACCCACTCTCAGTTCTTCACGCC
GTGGGGTTGGTGGCGTACGGACTCCGCCTGGTCATCTTTTGTCGCTGGAG
AGACTCGTTGGCGTTTCCAGGAGCGCGTCAGATCACGCAGAGCTCCCCGG
GCCGCCCTTACAAGTTCTGGGTCATATGCTCCGTGCTGTACGCCCTCCTA
GCCCTGCCGACCGTATACGTTCAGCGCCGACTACCGGCCCCCGAGGCAAG
TTATCGCGTCAGATCACGCAGAGCTCCCCGGGCCGCCCTTACAAGTTCTG
GGTCATATGCTCCGTGCTGTACGCCCTCCTAGCCCTGCCGACCGTATACG
TTCAGCGCCGACTACCGGCCCCCGAGGCAAGTTATCGCGGCGTGCTGCGG
CGTGCTTCAGGCTGGACTTGCAACCATGGCAGCAGGGCTCGTCGTGGAAG
GGGTCGCAGATTGGCAGAAGTCAAAGTTCAAGATGAAAAAGCGGGACAGC
TTCATCAGCAGTCAGGCTGGACTTGCAACCATGGCAGCAGGGCTCGTCGT
GGAAGGGGTCGCAGATTGGCAGAAGTCAAAGTTCAAGATGAAAAAGCGGG
ACAGCTTCATCAGCAGCGGCCTCTTCCGCTTCTCCCGGCACGCCAACTAC
TTCGGAGAGGTCGTGTTCTGGGCAGGGGTCTGGATCGCTGCGACCCCTTC
CTTCACCAAGTGGTGACGGCCTCTTCCGCTTCTCCCGGCACGCCAACTAC
TTCGGAGAGGTCGTGTTCTGGGCAGGGGTCTGGATCGCTGCGACCCCTTC
CTTCACCAAGTGGTGA
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