mRNA_H-elongata_contig165812.4145.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig165812.4145.1
Unique NamemRNA_H-elongata_contig165812.4145.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
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BLAST of mRNA_H-elongata_contig165812.4145.1 vs. uniprot
Match: D8LG60_ECTSI (Histone deactylase of possible bacterial origin with ankyrin repeats at the N-terminus n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LG60_ECTSI)

HSP 1 Score: 124 bits (312), Expect = 1.500e-31
Identity = 60/69 (86.96%), Postives = 65/69 (94.20%), Query Frame = 1 
Query:    1 KALKKFGKEWKRVACMVKTRTVVQTRTHAQKYFQKLTKAAQGGGICLDDGDAPDLMDIEVHMNTIDSSQ 207
            +ALKK+GKEWKRVACMV+TRTVVQTRTHAQKYFQKLTKAA GGGI L+DG+ PDLMDIEVHMNTID SQ
Sbjct:  761 RALKKYGKEWKRVACMVRTRTVVQTRTHAQKYFQKLTKAAAGGGISLEDGEGPDLMDIEVHMNTIDPSQ 829
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BLAST of mRNA_H-elongata_contig165812.4145.1 vs. uniprot
Match: A0A6H5K5H7_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K5H7_9PHAE)

HSP 1 Score: 80.1 bits (196), Expect = 7.120e-16
Identity = 38/40 (95.00%), Postives = 40/40 (100.00%), Query Frame = 1 
Query:    1 KALKKFGKEWKRVACMVKTRTVVQTRTHAQKYFQKLTKAA 120
            KALKK+GKEWKRVACMV+TRTVVQTRTHAQKYFQKLTKAA
Sbjct:  239 KALKKYGKEWKRVACMVRTRTVVQTRTHAQKYFQKLTKAA 278
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BLAST of mRNA_H-elongata_contig165812.4145.1 vs. uniprot
Match: A0A835YHT8_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YHT8_9STRA)

HSP 1 Score: 72.4 bits (176), Expect = 4.960e-15
Identity = 37/49 (75.51%), Postives = 39/49 (79.59%), Query Frame = 1 
Query:    1 KALKKFGKEWKRVACMVKTRTVVQTRTHAQKYFQKLTKAAQGGGICLDD 147
            KAL  +GKEWKRVA MV TRTVVQTRTHAQKYFQKL K + G   CLDD
Sbjct:   42 KALGVYGKEWKRVAAMVGTRTVVQTRTHAQKYFQKLQKTSGGEMECLDD 90
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BLAST of mRNA_H-elongata_contig165812.4145.1 vs. uniprot
Match: A0A1E7FKC4_9STRA (Uncharacterized protein (Fragment) n=1 Tax=Fragilariopsis cylindrus CCMP1102 TaxID=635003 RepID=A0A1E7FKC4_9STRA)

HSP 1 Score: 66.6 bits (161), Expect = 3.480e-13
Identity = 31/39 (79.49%), Postives = 35/39 (89.74%), Query Frame = 1 
Query:    7 LKKFGKEWKRVACMVKTRTVVQTRTHAQKYFQKLTKAAQ 123
            LK +GKEWK+VA  VKTRTVVQTRTHAQKYFQKL+KA +
Sbjct:   14 LKMYGKEWKKVAAKVKTRTVVQTRTHAQKYFQKLSKATE 52
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BLAST of mRNA_H-elongata_contig165812.4145.1 vs. uniprot
Match: A0A7S3HM63_9STRA (Hypothetical protein (Fragment) n=1 Tax=Spumella elongata TaxID=89044 RepID=A0A7S3HM63_9STRA)

HSP 1 Score: 71.2 bits (173), Expect = 8.620e-13
Identity = 34/38 (89.47%), Postives = 37/38 (97.37%), Query Frame = 1 
Query:    4 ALKKFGKEWKRVACMVKTRTVVQTRTHAQKYFQKLTKA 117
            ALKK+GKEWK+VA MVKTRTVVQTRTHAQKYFQKLTK+
Sbjct:   32 ALKKYGKEWKKVAGMVKTRTVVQTRTHAQKYFQKLTKS 69
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BLAST of mRNA_H-elongata_contig165812.4145.1 vs. uniprot
Match: B8C5L1_THAPS (MYB DNA binding protein/ transcription factor-like protein (Fragment) n=1 Tax=Thalassiosira pseudonana TaxID=35128 RepID=B8C5L1_THAPS)

HSP 1 Score: 63.5 bits (153), Expect = 5.760e-12
Identity = 30/40 (75.00%), Postives = 34/40 (85.00%), Query Frame = 1 
Query:    4 ALKKFGKEWKRVACMVKTRTVVQTRTHAQKYFQKLTKAAQ 123
            AL+ +GKEWK+VA  VKTRTVVQTRTHAQKYFQKL K  +
Sbjct:   13 ALQVYGKEWKKVAARVKTRTVVQTRTHAQKYFQKLQKVLE 52
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BLAST of mRNA_H-elongata_contig165812.4145.1 vs. uniprot
Match: A0A1Z5JSY0_FISSO (Uncharacterized protein n=2 Tax=Fistulifera solaris TaxID=1519565 RepID=A0A1Z5JSY0_FISSO)

HSP 1 Score: 67.4 bits (163), Expect = 2.110e-11
Identity = 32/42 (76.19%), Postives = 35/42 (83.33%), Query Frame = 1 
Query:    7 LKKFGKEWKRVACMVKTRTVVQTRTHAQKYFQKLTKAAQGGG 132
            LK +GKEWK+VA  VKTRTVVQTRTHAQKYFQKL K A+  G
Sbjct:  136 LKMYGKEWKKVAARVKTRTVVQTRTHAQKYFQKLHKTAEDSG 177
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BLAST of mRNA_H-elongata_contig165812.4145.1 vs. uniprot
Match: A0A7S4RBR2_9STRA (Hypothetical protein n=4 Tax=Ditylum brightwellii TaxID=49249 RepID=A0A7S4RBR2_9STRA)

HSP 1 Score: 67.4 bits (163), Expect = 2.120e-11
Identity = 36/59 (61.02%), Postives = 42/59 (71.19%), Query Frame = 1 
Query:    4 ALKKFGKEWKRVACMVKTRTVVQTRTHAQKYFQKLTKAAQGGGICLDDGDAPDLMDIEV 180
            AL+ +GKEWK+VA  VKTRTVVQTRTHAQKYFQKL KA          GD  ++ DIE+
Sbjct:  220 ALQLYGKEWKKVAAKVKTRTVVQTRTHAQKYFQKLQKAMVNSS-----GDKEEIADIEM 273
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BLAST of mRNA_H-elongata_contig165812.4145.1 vs. uniprot
Match: A0A448YY97_9STRA (Uncharacterized protein n=1 Tax=Pseudo-nitzschia multistriata TaxID=183589 RepID=A0A448YY97_9STRA)

HSP 1 Score: 67.0 bits (162), Expect = 2.890e-11
Identity = 31/40 (77.50%), Postives = 35/40 (87.50%), Query Frame = 1 
Query:    7 LKKFGKEWKRVACMVKTRTVVQTRTHAQKYFQKLTKAAQG 126
            +K +GKEWK+VA  VKTRTVVQTRTHAQKYFQKL KA +G
Sbjct:  122 IKMYGKEWKKVAAKVKTRTVVQTRTHAQKYFQKLAKANEG 161
[Close]
BLAST of mRNA_H-elongata_contig165812.4145.1 vs. uniprot
Match: A0A7S3Q3P5_9STRA (Hypothetical protein n=1 Tax=Chaetoceros debilis TaxID=122233 RepID=A0A7S3Q3P5_9STRA)

HSP 1 Score: 65.9 bits (159), Expect = 7.360e-11
Identity = 34/50 (68.00%), Postives = 39/50 (78.00%), Query Frame = 1 
Query:    4 ALKKFGKEWKRVACMVKTRTVVQTRTHAQKYFQKLTKAAQGGGICLDDGD 153
            AL+++GKEWK+VA  VKTRTVVQTRTHAQKYFQKL K     G+  D GD
Sbjct:   82 ALQQYGKEWKKVAAKVKTRTVVQTRTHAQKYFQKLQK-----GLANDKGD 126
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig165812.4145.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LG60_ECTSI1.500e-3186.96Histone deactylase of possible bacterial origin wi... [more]
A0A6H5K5H7_9PHAE7.120e-1695.00Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A835YHT8_9STRA4.960e-1575.51Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
A0A1E7FKC4_9STRA3.480e-1379.49Uncharacterized protein (Fragment) n=1 Tax=Fragila... [more]
A0A7S3HM63_9STRA8.620e-1389.47Hypothetical protein (Fragment) n=1 Tax=Spumella e... [more]
B8C5L1_THAPS5.760e-1275.00MYB DNA binding protein/ transcription factor-like... [more]
A0A1Z5JSY0_FISSO2.110e-1176.19Uncharacterized protein n=2 Tax=Fistulifera solari... [more]
A0A7S4RBR2_9STRA2.120e-1161.02Hypothetical protein n=4 Tax=Ditylum brightwellii ... [more]
A0A448YY97_9STRA2.890e-1177.50Uncharacterized protein n=1 Tax=Pseudo-nitzschia m... [more]
A0A7S3Q3P5_9STRA7.360e-1168.00Hypothetical protein n=1 Tax=Chaetoceros debilis T... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig165812contigH-elongata_contig165812:677..1347 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score124.8
Seed ortholog evalue1.7e-26
Seed eggNOG ortholog2880.D8LG60
EggNOG free text desc.NAD-dependent histone deacetylase activity (H3-K14 specific)
EggNOG OGsCOG0123@1,COG0666@1,KOG0724@1,KOG0724@2759,KOG1343@2759,KOG4177@2759
COG Functional cat.K
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Hectar predicted targeting categoryother localisation
Exons2
Model size219
Cds size219
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929970.6522944-CDS-H-elongata_contig165812:676..7721622929970.6522944-CDS-H-elongata_contig165812:676..772Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig165812 677..772 -
1691679229.0358782-CDS-H-elongata_contig165812:676..7721691679229.0358782-CDS-H-elongata_contig165812:676..772Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig165812 677..772 -
1622929970.671108-CDS-H-elongata_contig165812:1224..13471622929970.671108-CDS-H-elongata_contig165812:1224..1347Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig165812 1225..1347 -
1691679229.047042-CDS-H-elongata_contig165812:1224..13471691679229.047042-CDS-H-elongata_contig165812:1224..1347Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig165812 1225..1347 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig165812.4145.1prot_H-elongata_contig165812.4145.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig165812 677..1347 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig165812.4145.1

>prot_H-elongata_contig165812.4145.1 ID=prot_H-elongata_contig165812.4145.1|Name=mRNA_H-elongata_contig165812.4145.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=73bp
KALKKFGKEWKRVACMVKTRTVVQTRTHAQKYFQKLTKAAQGGGICLDDG
DAPDLMDIEVHMNTIDSSQVLQ*
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mRNA from alignment at H-elongata_contig165812:677..1347-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig165812.4145.1 ID=mRNA_H-elongata_contig165812.4145.1|Name=mRNA_H-elongata_contig165812.4145.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=671bp|location=Sequence derived from alignment at H-elongata_contig165812:677..1347- (Himanthalia elongata Himel1 dioecious)
AAGGCCTTGAAAAAGTTTGGCAAGGAATGGAAGCGGGTCGCCTGTATGGT
GAAGACGCGCACGGTGGTACAAACCCGTACACACGCCCAGAAATACTTCC
AGAAGCTCACGAAGGCTGCACAGGTGCTGCTGCATGGGGTGACCACCACG
TCATGCGTGAAATCAGAAAAAAAAAGAAGAAAAAAAATGCCGATGCTGCC
GATGCCACCGCCACTGCCTCAGTCGTCATTTTGTTCGTTTTTTCCGCGCA
CGTTTCCATAGCTGTAGTAGTTGTTAAGGCTCTTTTGCGTGCCTACCTCG
GCGTTTTCCTCCTCGGCGCTCTTTTACTATCCCTCTTTCATTCTCTCTTT
TATTCTTATATTTTCTCGCTCTCTCATTATCCTATTCGCTTGCCTCGGTT
TCGATACCGATTCTGGTTTGGTTTTGATACCGATTCCGGCTGGTGGACTG
CTTGTACACACGGGGAAGCCTGGTGCGGGGAAGGGGGCGTACAGACTTGT
CCCACCTTTTGCACCTGATTGTCCTTCTTTTCTCTCGTTTCTTTCATGTT
TGGCGGCCTCGGCGCTCGAGGGCAGGGCGGAGGCATTTGTCTGGACGACG
GCGATGCCCCGGACCTTATGGACATCGAGGTCCACATGAACACAATCGAC
TCGTCACAGGTATTACAATGA
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Coding sequence (CDS) from alignment at H-elongata_contig165812:677..1347-

>mRNA_H-elongata_contig165812.4145.1 ID=mRNA_H-elongata_contig165812.4145.1|Name=mRNA_H-elongata_contig165812.4145.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=438bp|location=Sequence derived from alignment at H-elongata_contig165812:677..1347- (Himanthalia elongata Himel1 dioecious)
AAGGCCTTGAAAAAGTTTGGCAAGGAATGGAAGCGGGTCGCCTGTATGGT
GAAGACGCGCACGGTGGTACAAACCCGTACACACGCCCAGAAATACTTCC
AGAAGCTCACGAAGGCTGCACAGAAGGCCTTGAAAAAGTTTGGCAAGGAA
TGGAAGCGGGTCGCCTGTATGGTGAAGACGCGCACGGTGGTACAAACCCG
TACACACGCCCAGAAATACTTCCAGAAGCTCACGAAGGCTGCACAGGGCG
GAGGCATTTGTCTGGACGACGGCGATGCCCCGGACCTTATGGACATCGAG
GTCCACATGAACACAATCGACTCGTCACAGGTATTACAATGAGGCGGAGG
CATTTGTCTGGACGACGGCGATGCCCCGGACCTTATGGACATCGAGGTCC
ACATGAACACAATCGACTCGTCACAGGTATTACAATGA
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