mRNA_H-elongata_contig165661.4135.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig165661.4135.1
Unique NamemRNA_H-elongata_contig165661.4135.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
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BLAST of mRNA_H-elongata_contig165661.4135.1 vs. uniprot
Match: D7G789_ECTSI (Alpha-glucosidase II alpha subunit, family GH31 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G789_ECTSI)

HSP 1 Score: 155 bits (393), Expect = 2.050e-43
Identity = 72/80 (90.00%), Postives = 77/80 (96.25%), Query Frame = 1 
Query:    1 QVSMKKDCLSLAGVEHRHWHNTYGMYMQRATAEGLELPRRGSAGGRGGGNGDGRPFVLSRSFFAGSQRWGAIWTGDNAAK 240
            +VSMKKDCLSLAG+EHRHWHNTYGMYMQRATAEGLELPRRG+A  RGGG GDGRPFVLSR+FFAGSQRWGA+WTGDNAAK
Sbjct:  163 EVSMKKDCLSLAGIEHRHWHNTYGMYMQRATAEGLELPRRGNA--RGGGGGDGRPFVLSRAFFAGSQRWGAVWTGDNAAK 240
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BLAST of mRNA_H-elongata_contig165661.4135.1 vs. uniprot
Match: A0A7S4J359_9EUKA (Hypothetical protein (Fragment) n=1 Tax=Prymnesium polylepis TaxID=72548 RepID=A0A7S4J359_9EUKA)

HSP 1 Score: 108 bits (270), Expect = 5.350e-29
Identity = 55/78 (70.51%), Postives = 59/78 (75.64%), Query Frame = 1 
Query:    1 QVSMKKDCLSLAGVEHRHWHNTYGMYMQRATAEGLELPRRGSAGGRGGGNGDGRPFVLSRSFFAGSQRWGAIWTGDNA 234
            +VSM KD  SLAGVEHR WHN YGMYMQ+ATAEGL L R  +         D RPFVLSRSF+AGSQRWGAIWTGDNA
Sbjct:    7 EVSMNKDAKSLAGVEHREWHNLYGMYMQQATAEGL-LQRNPAQ--------DKRPFVLSRSFYAGSQRWGAIWTGDNA 75
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BLAST of mRNA_H-elongata_contig165661.4135.1 vs. uniprot
Match: A0A7S3WJH3_9SPIT (Hypothetical protein (Fragment) n=1 Tax=Strombidinopsis acuminata TaxID=141414 RepID=A0A7S3WJH3_9SPIT)

HSP 1 Score: 114 bits (284), Expect = 1.210e-27
Identity = 58/80 (72.50%), Postives = 61/80 (76.25%), Query Frame = 1 
Query:    1 QVSMKKDCLSLAGVEHRHWHNTYGMYMQRATAEGLELPRRGSAGGRGGGNGDGRPFVLSRSFFAGSQRWGAIWTGDNAAK 240
            +VSM+KD LSLAGVEHR WHN YGMYMQRATAEGL L R            D RPFVLSRSF+AGSQRWGAIWTGDNA K
Sbjct:  566 EVSMQKDALSLAGVEHREWHNLYGMYMQRATAEGL-LRRNPEQ--------DKRPFVLSRSFYAGSQRWGAIWTGDNACK 636
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BLAST of mRNA_H-elongata_contig165661.4135.1 vs. uniprot
Match: R1DWY0_EMIHU (Gal_mutarotas_2 domain-containing protein n=1 Tax=Emiliania huxleyi TaxID=2903 RepID=R1DWY0_EMIHU)

HSP 1 Score: 110 bits (276), Expect = 1.480e-26
Identity = 56/80 (70.00%), Postives = 60/80 (75.00%), Query Frame = 1 
Query:    1 QVSMKKDCLSLAGVEHRHWHNTYGMYMQRATAEGLELPRRGSAGGRGGGNGDGRPFVLSRSFFAGSQRWGAIWTGDNAAK 240
            +VSM+KD  SL+GVEHR WHN YGMYMQRATAEGL L R            D RPFVLSRSF+AGSQRWGAIWTGDNA K
Sbjct:  317 EVSMQKDAKSLSGVEHREWHNLYGMYMQRATAEGL-LQRNEKR--------DKRPFVLSRSFYAGSQRWGAIWTGDNACK 387
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BLAST of mRNA_H-elongata_contig165661.4135.1 vs. uniprot
Match: A0A7S2UTV6_9STRA (Hypothetical protein (Fragment) n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2UTV6_9STRA)

HSP 1 Score: 103 bits (257), Expect = 2.110e-26
Identity = 55/80 (68.75%), Postives = 58/80 (72.50%), Query Frame = 1 
Query:    1 QVSMKKDCLSLAGVEHRHWHNTYGMYMQRATAEGLELPRRGSAGGRGGGNGDGRPFVLSRSFFAGSQRWGAIWTGDNAAK 240
            +VSM KDCLS AGVEHR WHN YG Y   ATAEGL          R GGN   RPFVLSRSFFAGSQR+GAIWTGDNAA+
Sbjct:   29 EVSMPKDCLSRAGVEHREWHNLYGHYFHGATAEGLVR--------RSGGNE--RPFVLSRSFFAGSQRFGAIWTGDNAAQ 98
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BLAST of mRNA_H-elongata_contig165661.4135.1 vs. uniprot
Match: A0A7S3B2B6_9EUKA (Hypothetical protein n=1 Tax=Haptolina ericina TaxID=156174 RepID=A0A7S3B2B6_9EUKA)

HSP 1 Score: 110 bits (274), Expect = 2.640e-26
Identity = 56/80 (70.00%), Postives = 59/80 (73.75%), Query Frame = 1 
Query:    1 QVSMKKDCLSLAGVEHRHWHNTYGMYMQRATAEGLELPRRGSAGGRGGGNGDGRPFVLSRSFFAGSQRWGAIWTGDNAAK 240
            +VSM KD  SLAGVEHR WHN YGMYMQ+ATAEGL L R            D RPFVLSRSF+AGSQRWGAIWTGDNA K
Sbjct:  251 EVSMNKDAKSLAGVEHREWHNLYGMYMQQATAEGL-LKRNPEQ--------DKRPFVLSRSFYAGSQRWGAIWTGDNACK 321
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BLAST of mRNA_H-elongata_contig165661.4135.1 vs. uniprot
Match: A0A4D9D2P9_9STRA (Gal_mutarotas_2 domain-containing protein n=2 Tax=Monodopsidaceae TaxID=425072 RepID=A0A4D9D2P9_9STRA)

HSP 1 Score: 108 bits (269), Expect = 1.330e-25
Identity = 55/79 (69.62%), Postives = 61/79 (77.22%), Query Frame = 1 
Query:    1 QVSMKKDCLSLAGVEHRHWHNTYGMYMQRATAEGLELPRRGSAGGRGGGNGDGRPFVLSRSFFAGSQRWGAIWTGDNAA 237
            +VSM+KDC +LAGVEHR WHN YGMYMQRATAEGL L  R S G         RPFVLSR+F+AGSQR+GAIWTGDN A
Sbjct:  607 EVSMQKDCRNLAGVEHREWHNLYGMYMQRATAEGLTL--RDSKGLE-------RPFVLSRAFYAGSQRFGAIWTGDNKA 676
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BLAST of mRNA_H-elongata_contig165661.4135.1 vs. uniprot
Match: A0A7S2STM5_9STRA (Hypothetical protein n=2 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2STM5_9STRA)

HSP 1 Score: 106 bits (264), Expect = 6.310e-25
Identity = 52/80 (65.00%), Postives = 60/80 (75.00%), Query Frame = 1 
Query:    1 QVSMKKDCLSLAGVEHRHWHNTYGMYMQRATAEGLELPRRGSAGGRGGGNGDGRPFVLSRSFFAGSQRWGAIWTGDNAAK 240
            +V+M+KDC +L GVEHR WHN YGMY QRATAEG ++ R G         G  RPFVLSRSF+AGSQRWGAIWTGDN A+
Sbjct:  578 EVTMQKDCKNLKGVEHREWHNLYGMYQQRATAEG-QIMRSG---------GQLRPFVLSRSFYAGSQRWGAIWTGDNRAE 647
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BLAST of mRNA_H-elongata_contig165661.4135.1 vs. uniprot
Match: A0A0M0JX43_9EUKA (Alpha-glucosidase ii n=1 Tax=Chrysochromulina tobinii TaxID=1460289 RepID=A0A0M0JX43_9EUKA)

HSP 1 Score: 105 bits (263), Expect = 8.620e-25
Identity = 51/80 (63.75%), Postives = 56/80 (70.00%), Query Frame = 1 
Query:    1 QVSMKKDCLSLAGVEHRHWHNTYGMYMQRATAEGLELPRRGSAGGRGGGNGDGRPFVLSRSFFAGSQRWGAIWTGDNAAK 240
            +VSM KD  S+AG+EHR WHN YGMYM +ATA GL     G          D RPFVLSRSF+AGSQRWGAIWTGDNA K
Sbjct:  590 EVSMNKDAKSIAGIEHREWHNLYGMYMHQATALGLLRRNPGE---------DSRPFVLSRSFYAGSQRWGAIWTGDNACK 660
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BLAST of mRNA_H-elongata_contig165661.4135.1 vs. uniprot
Match: A0A7S0LRM7_9EUKA (Hypothetical protein n=1 Tax=Coccolithus braarudii TaxID=221442 RepID=A0A7S0LRM7_9EUKA)

HSP 1 Score: 105 bits (261), Expect = 1.600e-24
Identity = 53/80 (66.25%), Postives = 57/80 (71.25%), Query Frame = 1 
Query:    1 QVSMKKDCLSLAGVEHRHWHNTYGMYMQRATAEGLELPRRGSAGGRGGGNGDGRPFVLSRSFFAGSQRWGAIWTGDNAAK 240
            +VSM KD  S+AGVEHR WHN YGMYM RATAEGL L R            D RPFVLSRSF++GSQRWG IWTGDNA K
Sbjct:  581 EVSMSKDSKSIAGVEHREWHNLYGMYMHRATAEGL-LQRNEPQ--------DKRPFVLSRSFYSGSQRWGPIWTGDNACK 651
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig165661.4135.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7G789_ECTSI2.050e-4390.00Alpha-glucosidase II alpha subunit, family GH31 n=... [more]
A0A7S4J359_9EUKA5.350e-2970.51Hypothetical protein (Fragment) n=1 Tax=Prymnesium... [more]
A0A7S3WJH3_9SPIT1.210e-2772.50Hypothetical protein (Fragment) n=1 Tax=Strombidin... [more]
R1DWY0_EMIHU1.480e-2670.00Gal_mutarotas_2 domain-containing protein n=1 Tax=... [more]
A0A7S2UTV6_9STRA2.110e-2668.75Hypothetical protein (Fragment) n=1 Tax=Fibrocapsa... [more]
A0A7S3B2B6_9EUKA2.640e-2670.00Hypothetical protein n=1 Tax=Haptolina ericina Tax... [more]
A0A4D9D2P9_9STRA1.330e-2569.62Gal_mutarotas_2 domain-containing protein n=2 Tax=... [more]
A0A7S2STM5_9STRA6.310e-2565.00Hypothetical protein n=2 Tax=Rhizochromulina marin... [more]
A0A0M0JX43_9EUKA8.620e-2563.75Alpha-glucosidase ii n=1 Tax=Chrysochromulina tobi... [more]
A0A7S0LRM7_9EUKA1.600e-2466.25Hypothetical protein n=1 Tax=Coccolithus braarudii... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig165661contigH-elongata_contig165661:836..1078 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score152.9
Seed ortholog evalue6.1e-35
Seed eggNOG ortholog2880.D7G789
Preferred nameROT2
KEGG rclassRC00028,RC00049,RC00077
KEGG koko:K01187,ko:K05546
KEGG ReactionR00028,R00801,R00802,R05980,R05981,R06087,R06088
KEGG Pathwayko00052,ko00500,ko00510,ko01100,ko04141,map00052,map00500,map00510,map01100,map04141
KEGG ModuleM00073,M00074
GOsGO:0000271,GO:0000902,GO:0003674,GO:0003824,GO:0004553,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005739,GO:0005783,GO:0005788,GO:0005975,GO:0005976,GO:0006073,GO:0006464,GO:0006486,GO:0006487,GO:0006491,GO:0006807,GO:0006950,GO:0006952,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009100,GO:0009101,GO:0009250,GO:0009272,GO:0009507,GO:0009536,GO:0009605,GO:0009607,GO:0009617,GO:0009653,GO:0009826,GO:0009987,GO:0010035,GO:0010038,GO:0010383,GO:0012505,GO:0015926,GO:0016043,GO:0016049,GO:0016051,GO:0016787,GO:0016798,GO:0017177,GO:0019538,GO:0030243,GO:0030244,GO:0030587,GO:0031288,GO:0031974,GO:0032502,GO:0032989,GO:0032991,GO:0033692,GO:0033919,GO:0034406,GO:0034637,GO:0034645,GO:0036211,GO:0040007,GO:0042221,GO:0042546,GO:0042742,GO:0043170,GO:0043207,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043233,GO:0043412,GO:0043413,GO:0043687,GO:0044036,GO:0044038,GO:0044042,GO:0044085,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044262,GO:0044264,GO:0044267,GO:0044422,GO:0044424,GO:0044432,GO:0044444,GO:0044446,GO:0044464,GO:0046686,GO:0048589,GO:0048856,GO:0048869,GO:0050896,GO:0051273,GO:0051274,GO:0051278,GO:0051703,GO:0051704,GO:0051707,GO:0060560,GO:0070013,GO:0070085,GO:0070589,GO:0070592,GO:0070879,GO:0070880,GO:0071554,GO:0071704,GO:0071840,GO:0071852,GO:0071966,GO:0090599,GO:0090600,GO:0090702,GO:0098542,GO:0099120,GO:1901135,GO:1901137,GO:1901564,GO:1901566,GO:1901576
EggNOG free text desc.alpha-1,3-glucosidase activity
EggNOG OGsCOG1501@1,KOG1066@2759
EC3.2.1.20,3.2.1.84
COG Functional cat.G
CAZyGH31
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00002,ko01000
Hectar predicted targeting categoryother localisation
Exons1
Model size243
Cds size234
Stop1
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929969.4981775-CDS-H-elongata_contig165661:835..10691622929969.4981775-CDS-H-elongata_contig165661:835..1069Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig165661 836..1069 -
1691679228.5372515-CDS-H-elongata_contig165661:835..10691691679228.5372515-CDS-H-elongata_contig165661:835..1069Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig165661 836..1069 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929969.5141594-UTR-H-elongata_contig165661:1069..10781622929969.5141594-UTR-H-elongata_contig165661:1069..1078Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig165661 1070..1078 -
1691679228.5492618-UTR-H-elongata_contig165661:1069..10781691679228.5492618-UTR-H-elongata_contig165661:1069..1078Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig165661 1070..1078 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig165661.4135.1prot_H-elongata_contig165661.4135.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig165661 836..1069 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig165661.4135.1

>prot_H-elongata_contig165661.4135.1 ID=prot_H-elongata_contig165661.4135.1|Name=mRNA_H-elongata_contig165661.4135.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=78bp
MKKDCLSLAGVEHRHWHNTYGMYMQRATAEGLELPRRGSAGGRGGGNGDG
RPFVLSRSFFAGSQRWGAIWTGDNAAK*
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mRNA from alignment at H-elongata_contig165661:836..1078-

Legend: UTRCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig165661.4135.1 ID=mRNA_H-elongata_contig165661.4135.1|Name=mRNA_H-elongata_contig165661.4135.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=243bp|location=Sequence derived from alignment at H-elongata_contig165661:836..1078- (Himanthalia elongata Himel1 dioecious)
CAGGTATCGATGAAAAAGGATTGCCTGAGCCTCGCTGGGGTGGAGCATCG
ACACTGGCATAACACCTACGGCATGTACATGCAGAGGGCGACCGCCGAGG
GTCTGGAGCTCCCTAGAAGGGGGAGCGCGGGAGGAAGAGGGGGGGGAAAC
GGAGACGGCAGGCCTTTCGTGCTGTCGAGGTCGTTTTTCGCCGGCAGCCA
GCGGTGGGGAGCGATTTGGACGGGAGACAACGCCGCCAAGTGA
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Coding sequence (CDS) from alignment at H-elongata_contig165661:836..1078-

>mRNA_H-elongata_contig165661.4135.1 ID=mRNA_H-elongata_contig165661.4135.1|Name=mRNA_H-elongata_contig165661.4135.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=468bp|location=Sequence derived from alignment at H-elongata_contig165661:836..1078- (Himanthalia elongata Himel1 dioecious)
ATGAAAAAGGATTGCCTGAGCCTCGCTGGGGTGGAGCATCGACACTGGCA
TAACACCTACGGCATGTACATGCAGAGGGCGACCGCCGAGGGTCTGGAGC
TCCCTAGAAGGGGGAGCGCGGGAGGAAGAGGGGGGGGAAACGGAGACGGC
AGGCCTTTCGTGCTGTCGAGGTCGTTTTTCGCCGGCAGCCAGCGGTGGGG
AGCGATTTGGACGGGAGACAACGCCGCCAAGTGAATGAAAAAGGATTGCC
TGAGCCTCGCTGGGGTGGAGCATCGACACTGGCATAACACCTACGGCATG
TACATGCAGAGGGCGACCGCCGAGGGTCTGGAGCTCCCTAGAAGGGGGAG
CGCGGGAGGAAGAGGGGGGGGAAACGGAGACGGCAGGCCTTTCGTGCTGT
CGAGGTCGTTTTTCGCCGGCAGCCAGCGGTGGGGAGCGATTTGGACGGGA
GACAACGCCGCCAAGTGA
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