mRNA_H-elongata_contig164573.4072.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig164573.4072.1
Unique NamemRNA_H-elongata_contig164573.4072.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig164573.4072.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig164573contigH-elongata_contig164573:201..1013 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionhypothetical protein
Ec32 orthologEc-11_002240.1
Exons2
Model size225
Cds size225
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929962.3201764-CDS-H-elongata_contig164573:200..2691622929962.3201764-CDS-H-elongata_contig164573:200..269Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig164573 201..269 -
1691679225.3703175-CDS-H-elongata_contig164573:200..2691691679225.3703175-CDS-H-elongata_contig164573:200..269Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig164573 201..269 -
1622929962.337483-CDS-H-elongata_contig164573:857..10131622929962.337483-CDS-H-elongata_contig164573:857..1013Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig164573 858..1013 -
1691679225.3792064-CDS-H-elongata_contig164573:857..10131691679225.3792064-CDS-H-elongata_contig164573:857..1013Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig164573 858..1013 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig164573.4072.1prot_H-elongata_contig164573.4072.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig164573 201..1013 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig164573.4072.1

>prot_H-elongata_contig164573.4072.1 ID=prot_H-elongata_contig164573.4072.1|Name=mRNA_H-elongata_contig164573.4072.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=75bp
TAAAAAAATSRGNSTSNSGGSSSASGADAGVVGMGEIEEEERRLKEKASK
LKLEMSAVQRRRVEVHLVKMEQQFQ
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mRNA from alignment at H-elongata_contig164573:201..1013-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig164573.4072.1 ID=mRNA_H-elongata_contig164573.4072.1|Name=mRNA_H-elongata_contig164573.4072.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=813bp|location=Sequence derived from alignment at H-elongata_contig164573:201..1013- (Himanthalia elongata Himel1 dioecious)
ACGGCAGCAGCAGCAGCAGCAGCAACATCGCGCGGAAACTCTACCAGCAA
CAGTGGCGGATCCTCTTCTGCTTCTGGGGCGGATGCCGGGGTCGTCGGGA
TGGGCGAGATCGAAGAGGAGGAGCGCCGTCTCAAGGAGAAGGCCAGCAAG
CTAAAGGTGTGTGTGTGTGTGTGTGTGTGTATTTATGAAATTGCACATAA
TCGCGTGATTCGGCCCTGTCATGCTAGTCATTGTAGGCTACACGTATTGA
TCCTCTTGATGGAGAATCAATTATATTTCCTACAAAATCCTCTTACCAGA
CGTGTGACAAAGGCGACATACTCTCTCTACATTTCGTATCTACGTGTTTG
TGTGTGTTTGTGTGTGTTTATGTGAGACAGAGTTTGCGCGTTGTTTAAGC
ATTTCCCACGGGGGACGGGGGGATGGCTAGATAGGGCGAGTCTACTACAG
TACCTTGCGAGGCGTGTTCATGGGGGTGGGGGAGTTCGGGAGAGTCATAC
TCGAAGGCAAGATCCCCTTTTTTCGTGTAGCTGACTCCCTTTAAAACCGA
AACGGCGTTGCGATCTCGAGCAGTAATATAATAGTGTCTACGTGCCCACG
TGAGGGAATATTATTGCCCGCACCAAATCCCATAATTCCTTGCCGCCTTC
CGATTCCCGCGTGCGTGCACGCGCATGTATGTGTGTACTTGGACGTCCGC
AACTCTTGTGCGACTCTTGCCTTAATCATCGGCGTGAGATATAGCTGGAG
ATGTCCGCCGTGCAGAGACGCCGCGTGGAAGTTCACCTTGTAAAGATGGA
GCAACAGTTTCAA
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Coding sequence (CDS) from alignment at H-elongata_contig164573:201..1013-

>mRNA_H-elongata_contig164573.4072.1 ID=mRNA_H-elongata_contig164573.4072.1|Name=mRNA_H-elongata_contig164573.4072.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=450bp|location=Sequence derived from alignment at H-elongata_contig164573:201..1013- (Himanthalia elongata Himel1 dioecious)
ACGGCAGCAGCAGCAGCAGCAGCAACATCGCGCGGAAACTCTACCAGCAA
CAGTGGCGGATCCTCTTCTGCTTCTGGGGCGGATGCCGGGGTCGTCGGGA
TGGGCGAGATCGAAGAGGAGGAGCGCCGTCTCAAGGAGAAGGCCAGCAAG
CTAAAGACGGCAGCAGCAGCAGCAGCAGCAACATCGCGCGGAAACTCTAC
CAGCAACAGTGGCGGATCCTCTTCTGCTTCTGGGGCGGATGCCGGGGTCG
TCGGGATGGGCGAGATCGAAGAGGAGGAGCGCCGTCTCAAGGAGAAGGCC
AGCAAGCTAAAGCTGGAGATGTCCGCCGTGCAGAGACGCCGCGTGGAAGT
TCACCTTGTAAAGATGGAGCAACAGTTTCAACTGGAGATGTCCGCCGTGC
AGAGACGCCGCGTGGAAGTTCACCTTGTAAAGATGGAGCAACAGTTTCAA
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