mRNA_H-elongata_contig164495.4071.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig164495.4071.1
Unique NamemRNA_H-elongata_contig164495.4071.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
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BLAST of mRNA_H-elongata_contig164495.4071.1 vs. uniprot
Match: D8LBT0_ECTSI (Arf-GAP domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LBT0_ECTSI)

HSP 1 Score: 182 bits (463), Expect = 4.220e-54
Identity = 85/97 (87.63%), Postives = 90/97 (92.78%), Query Frame = 1 
Query:    1 EPRWASANLGVFICLECSGVHRNLGVHISFVRSVNLDTWKSSQVKGMEEMGNERAKAHFEAGVPPGYPVPREHATVREREKWIRDKYEFRRFVSRDP 291
            EPRWAS NLG+FICL+CSG+HRNLGVHISFVRSVNLDTWK +QVKGMEEMGNERAKAHFEA VP  Y VPREHATVREREKWIRDKYE RRFVSR+P
Sbjct:   29 EPRWASVNLGLFICLDCSGIHRNLGVHISFVRSVNLDTWKPAQVKGMEEMGNERAKAHFEAEVPASYTVPREHATVREREKWIRDKYEHRRFVSRNP 125
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BLAST of mRNA_H-elongata_contig164495.4071.1 vs. uniprot
Match: A0A6H5L3P5_9PHAE (Arf-GAP domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L3P5_9PHAE)

HSP 1 Score: 181 bits (458), Expect = 3.040e-52
Identity = 84/97 (86.60%), Postives = 89/97 (91.75%), Query Frame = 1 
Query:    1 EPRWASANLGVFICLECSGVHRNLGVHISFVRSVNLDTWKSSQVKGMEEMGNERAKAHFEAGVPPGYPVPREHATVREREKWIRDKYEFRRFVSRDP 291
            EPRWAS NLG+FICL+CSG+HRNLGVHISFVRSVNLDTWK +QV+GMEEMGNERAKAHFEA VP  Y VPREHATVREREKWIRDKYE RRFVSR P
Sbjct:   29 EPRWASVNLGLFICLDCSGIHRNLGVHISFVRSVNLDTWKPAQVQGMEEMGNERAKAHFEAEVPASYTVPREHATVREREKWIRDKYEHRRFVSRSP 125
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BLAST of mRNA_H-elongata_contig164495.4071.1 vs. uniprot
Match: A0A836C8F7_9STRA (Arf-GAP domain-containing protein (Fragment) n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836C8F7_9STRA)

HSP 1 Score: 153 bits (387), Expect = 7.370e-46
Identity = 69/97 (71.13%), Postives = 82/97 (84.54%), Query Frame = 1 
Query:    1 EPRWASANLGVFICLECSGVHRNLGVHISFVRSVNLDTWKSSQVKGMEEMGNERAKAHFEAGVPPGYPVPREHATVREREKWIRDKYEFRRFVSRDP 291
            EPRWAS NLG+FICL CSG+HRNLGVHISFVRSVNLDTWK+ QV  ME +GN RAKA++EA VPPG PVP E ++VRE +KWIR KYE +R+++R P
Sbjct:   29 EPRWASVNLGLFICLGCSGIHRNLGVHISFVRSVNLDTWKTEQVDKMERIGNARAKAYYEANVPPGTPVPTESSSVRELDKWIRSKYEHKRYIARGP 125
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BLAST of mRNA_H-elongata_contig164495.4071.1 vs. uniprot
Match: A0A7S3UXM8_HETAK (Hypothetical protein (Fragment) n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3UXM8_HETAK)

HSP 1 Score: 150 bits (378), Expect = 4.100e-44
Identity = 67/97 (69.07%), Postives = 80/97 (82.47%), Query Frame = 1 
Query:    1 EPRWASANLGVFICLECSGVHRNLGVHISFVRSVNLDTWKSSQVKGMEEMGNERAKAHFEAGVPPGYPVPREHATVREREKWIRDKYEFRRFVSRDP 291
            EPRWASA LGVF+C+ CSG+HRNLGVHISFVRSVNLD+W+   V+ ME  GN RA+A+FEA VP  YP+P E +T RE EKWIRDKYE RRF++R+P
Sbjct:   42 EPRWASATLGVFMCIRCSGIHRNLGVHISFVRSVNLDSWREDHVQRMERWGNGRARAYFEAEVPSNYPIPGERSTTREVEKWIRDKYEHRRFLAREP 138
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BLAST of mRNA_H-elongata_contig164495.4071.1 vs. uniprot
Match: A0A7S2UT74_9STRA (Hypothetical protein (Fragment) n=2 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2UT74_9STRA)

HSP 1 Score: 148 bits (373), Expect = 1.870e-40
Identity = 66/97 (68.04%), Postives = 78/97 (80.41%), Query Frame = 1 
Query:    1 EPRWASANLGVFICLECSGVHRNLGVHISFVRSVNLDTWKSSQVKGMEEMGNERAKAHFEAGVPPGYPVPREHATVREREKWIRDKYEFRRFVSRDP 291
            EPRWASA LGVFIC+ CSG+HRNLGVHISFVRSVNLDTWK   V+ ME  GN RA  +FEA VPP Y +P E ++ RE E+WIRDKYE+R+F +R+P
Sbjct:   42 EPRWASATLGVFICIRCSGIHRNLGVHISFVRSVNLDTWKEDHVRKMEAWGNARAAEYFEADVPPNYRIPDEKSSTRELERWIRDKYEYRKFAARNP 138
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BLAST of mRNA_H-elongata_contig164495.4071.1 vs. uniprot
Match: G5A4X3_PHYSP (Arf-GAP domain-containing protein (Fragment) n=1 Tax=Phytophthora sojae (strain P6497) TaxID=1094619 RepID=G5A4X3_PHYSP)

HSP 1 Score: 140 bits (352), Expect = 3.990e-40
Identity = 62/96 (64.58%), Postives = 78/96 (81.25%), Query Frame = 1 
Query:    4 PRWASANLGVFICLECSGVHRNLGVHISFVRSVNLDTWKSSQVKGMEEMGNERAKAHFEAGVPPGYPVPREHATVREREKWIRDKYEFRRFVSRDP 291
            PRWAS NLGVFIC+ CSG+HR+LGVH++FVRSVNLD+W S QV+ M+  GN RAKA++EA VP  Y +P EH++VRE+E WIR+KYE +RFV   P
Sbjct:   40 PRWASINLGVFICIACSGIHRSLGVHLTFVRSVNLDSWTSEQVQQMQRWGNARAKAYYEANVPRDYRIPTEHSSVREKEMWIREKYERKRFVGEAP 135
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BLAST of mRNA_H-elongata_contig164495.4071.1 vs. uniprot
Match: A0A3F2RQV0_9STRA (Arf-GAP domain-containing protein n=1 Tax=Phytophthora kernoviae TaxID=325452 RepID=A0A3F2RQV0_9STRA)

HSP 1 Score: 140 bits (352), Expect = 6.890e-38
Identity = 62/96 (64.58%), Postives = 79/96 (82.29%), Query Frame = 1 
Query:    4 PRWASANLGVFICLECSGVHRNLGVHISFVRSVNLDTWKSSQVKGMEEMGNERAKAHFEAGVPPGYPVPREHATVREREKWIRDKYEFRRFVSRDP 291
            PRWAS NLGVFIC+ CSG+HR+LGVH++FVRSVNLD+W   QV+ M+  GN RAKA++EA VP  Y +P EHA+VRE+E WIR+KYE +RFV ++P
Sbjct:   39 PRWASINLGVFICIACSGIHRSLGVHLTFVRSVNLDSWTPEQVQQMQRWGNGRAKAYYEATVPRDYRIPTEHASVREKEMWIREKYERKRFVGQEP 134
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BLAST of mRNA_H-elongata_contig164495.4071.1 vs. uniprot
Match: A0A8K1FL28_PYTOL (Uncharacterized protein n=1 Tax=Pythium oligandrum TaxID=41045 RepID=A0A8K1FL28_PYTOL)

HSP 1 Score: 142 bits (358), Expect = 7.820e-38
Identity = 64/95 (67.37%), Postives = 79/95 (83.16%), Query Frame = 1 
Query:    4 PRWASANLGVFICLECSGVHRNLGVHISFVRSVNLDTWKSSQVKGMEEMGNERAKAHFEAGVPPGYPVPREHATVREREKWIRDKYEFRRFVSRD 288
            PRWAS NLGVFIC+ CSG+HR+LGVH++FVRSVNLD+W S QV  M++ GN RAKA++EA VP  Y +P EH++VRE+E WIRDKYE +RFV RD
Sbjct:   39 PRWASINLGVFICIACSGIHRSLGVHLTFVRSVNLDSWTSEQVAQMQKWGNGRAKAYYEATVPRDYRIPTEHSSVREKEMWIRDKYERKRFVGRD 133
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BLAST of mRNA_H-elongata_contig164495.4071.1 vs. uniprot
Match: M4C531_HYAAE (Arf-GAP domain-containing protein n=1 Tax=Hyaloperonospora arabidopsidis (strain Emoy2) TaxID=559515 RepID=M4C531_HYAAE)

HSP 1 Score: 140 bits (352), Expect = 1.110e-37
Identity = 62/92 (67.39%), Postives = 77/92 (83.70%), Query Frame = 1 
Query:    4 PRWASANLGVFICLECSGVHRNLGVHISFVRSVNLDTWKSSQVKGMEEMGNERAKAHFEAGVPPGYPVPREHATVREREKWIRDKYEFRRFV 279
            PRWAS NLGVFIC+ CSG+HR+LGVH++FVRSVNLD+W + QV+ M+  GN RAKAHFEA +P  Y VP EH++VR++E WIRDKYE +RFV
Sbjct:   41 PRWASINLGVFICIACSGIHRSLGVHVTFVRSVNLDSWTTEQVQQMQRWGNARAKAHFEAALPSDYFVPSEHSSVRDKELWIRDKYERKRFV 132
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BLAST of mRNA_H-elongata_contig164495.4071.1 vs. uniprot
Match: A0A397D8K1_9STRA (Arf-GAP domain-containing protein n=1 Tax=Aphanomyces astaci TaxID=112090 RepID=A0A397D8K1_9STRA)

HSP 1 Score: 135 bits (341), Expect = 3.070e-37
Identity = 60/95 (63.16%), Postives = 77/95 (81.05%), Query Frame = 1 
Query:    4 PRWASANLGVFICLECSGVHRNLGVHISFVRSVNLDTWKSSQVKGMEEMGNERAKAHFEAGVPPGYPVPREHATVREREKWIRDKYEFRRFVSRD 288
            PRWAS NLGVFIC+ CSG+HR+LGVH++FVRSVNLD+W   QV  M++ GN +AK +FEA VP  Y +P EH+ VR++E WIRDKYE +RF++RD
Sbjct:   39 PRWASINLGVFICIACSGIHRSLGVHLTFVRSVNLDSWTGDQVAQMQKWGNAKAKDYFEALVPKDYRIPTEHSPVRDKEIWIRDKYERKRFIARD 133
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig164495.4071.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LBT0_ECTSI4.220e-5487.63Arf-GAP domain-containing protein n=1 Tax=Ectocarp... [more]
A0A6H5L3P5_9PHAE3.040e-5286.60Arf-GAP domain-containing protein n=1 Tax=Ectocarp... [more]
A0A836C8F7_9STRA7.370e-4671.13Arf-GAP domain-containing protein (Fragment) n=1 T... [more]
A0A7S3UXM8_HETAK4.100e-4469.07Hypothetical protein (Fragment) n=1 Tax=Heterosigm... [more]
A0A7S2UT74_9STRA1.870e-4068.04Hypothetical protein (Fragment) n=2 Tax=Fibrocapsa... [more]
G5A4X3_PHYSP3.990e-4064.58Arf-GAP domain-containing protein (Fragment) n=1 T... [more]
A0A3F2RQV0_9STRA6.890e-3864.58Arf-GAP domain-containing protein n=1 Tax=Phytopht... [more]
A0A8K1FL28_PYTOL7.820e-3867.37Uncharacterized protein n=1 Tax=Pythium oligandrum... [more]
M4C531_HYAAE1.110e-3767.39Arf-GAP domain-containing protein n=1 Tax=Hyaloper... [more]
A0A397D8K1_9STRA3.070e-3763.16Arf-GAP domain-containing protein n=1 Tax=Aphanomy... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig164495contigH-elongata_contig164495:497..1154 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score185.7
Seed ortholog evalue1.3e-44
Seed eggNOG ortholog2880.D8LBT0
Preferred nameAGD15
KEGG koko:K12486
KEGG Pathwayko04144,map04144
GOsGO:0000003,GO:0001558,GO:0003006,GO:0003674,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005768,GO:0005794,GO:0005802,GO:0005829,GO:0006810,GO:0007275,GO:0008150,GO:0009791,GO:0009838,GO:0009908,GO:0009987,GO:0010227,GO:0012505,GO:0016043,GO:0016192,GO:0022414,GO:0022607,GO:0030135,GO:0030136,GO:0030276,GO:0030308,GO:0031410,GO:0031982,GO:0031984,GO:0032501,GO:0032502,GO:0034622,GO:0035459,GO:0035652,GO:0040008,GO:0043085,GO:0043087,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043547,GO:0043933,GO:0044085,GO:0044093,GO:0044422,GO:0044424,GO:0044431,GO:0044444,GO:0044446,GO:0044464,GO:0045926,GO:0048367,GO:0048437,GO:0048519,GO:0048523,GO:0048608,GO:0048731,GO:0048856,GO:0050789,GO:0050790,GO:0050794,GO:0051128,GO:0051179,GO:0051234,GO:0051336,GO:0051345,GO:0060858,GO:0061458,GO:0065003,GO:0065007,GO:0065009,GO:0071840,GO:0090567,GO:0090630,GO:0097708,GO:0098791,GO:0099402
EggNOG free text desc.GTPase activator activity
EggNOG OGsCOG5347@1,KOG0703@2759
Ec32 ortholog descriptionArf GTPase activating protein
Ec32 orthologEc-27_002820.1
COG Functional cat.U
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko04131
Hectar predicted targeting categoryother localisation
Exons2
Model size369
Cds size369
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929962.247273-CDS-H-elongata_contig164495:496..6311622929962.247273-CDS-H-elongata_contig164495:496..631Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig164495 497..631 +
1691679225.3507917-CDS-H-elongata_contig164495:496..6311691679225.3507917-CDS-H-elongata_contig164495:496..631Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig164495 497..631 +
1622929962.265295-CDS-H-elongata_contig164495:920..11541622929962.265295-CDS-H-elongata_contig164495:920..1154Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig164495 921..1154 +
1691679225.3624003-CDS-H-elongata_contig164495:920..11541691679225.3624003-CDS-H-elongata_contig164495:920..1154Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig164495 921..1154 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig164495.4071.1prot_H-elongata_contig164495.4071.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig164495 497..1154 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig164495.4071.1

>prot_H-elongata_contig164495.4071.1 ID=prot_H-elongata_contig164495.4071.1|Name=mRNA_H-elongata_contig164495.4071.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=123bp
EPRWASANLGVFICLECSGVHRNLGVHISFVRSVNLDTWKSSQVKGMEEM
GNERAKAHFEAGVPPGYPVPREHATVREREKWIRDKYEFRRFVSRDPPPP
QRNQDDSSESRSSRRVCAKGSR*
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mRNA from alignment at H-elongata_contig164495:497..1154+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig164495.4071.1 ID=mRNA_H-elongata_contig164495.4071.1|Name=mRNA_H-elongata_contig164495.4071.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=658bp|location=Sequence derived from alignment at H-elongata_contig164495:497..1154+ (Himanthalia elongata Himel1 dioecious)
GAGCCCCGATGGGCGTCCGCCAACCTGGGCGTGTTCATCTGCCTTGAGTG
CTCGGGGGTTCACCGTAACCTTGGAGTCCACATCTCTTTCGTCCGGAGTG
TCAACCTGGACACGTGGAAGTCGAGCCAAGTCAAGGTGTGGAGGCAACGC
GCGTTATTTTTCTGCTGCTGCTGCTTGTTGTTGGCACCCGATGTTTCTGC
TATTAATAGTCGGTGTAAAGATTTTTGCGGACGCTAGACAAAGCTCGAAG
CTACGTTTCCATTTTATTTTCCCTTTGAATAGATCTATTGGATATATAGA
GATAAGAAGCTAAAGCGATGAATAGGCCACGATGTCACGTTTTTTCGGGT
GTCGGCATAGAGGTAGTTGGCTGCGCGTGATTACATGGTGGTTTGGTGCT
GATCTGACTAATCCCGGCGTTCAGGGAATGGAGGAAATGGGGAACGAGCG
CGCCAAGGCTCATTTCGAAGCCGGAGTGCCACCTGGTTACCCCGTGCCTC
GGGAGCATGCGACGGTCCGCGAGCGCGAGAAGTGGATTCGAGACAAGTAC
GAGTTCCGTCGATTCGTCTCTAGGGATCCTCCTCCCCCACAACGGAATCA
AGATGACTCCAGCGAGTCGCGATCGTCGAGGCGAGTGTGCGCCAAGGGAT
CGAGATAA
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Coding sequence (CDS) from alignment at H-elongata_contig164495:497..1154+

>mRNA_H-elongata_contig164495.4071.1 ID=mRNA_H-elongata_contig164495.4071.1|Name=mRNA_H-elongata_contig164495.4071.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=738bp|location=Sequence derived from alignment at H-elongata_contig164495:497..1154+ (Himanthalia elongata Himel1 dioecious)
GAGCCCCGATGGGCGTCCGCCAACCTGGGCGTGTTCATCTGCCTTGAGTG
CTCGGGGGTTCACCGTAACCTTGGAGTCCACATCTCTTTCGTCCGGAGTG
TCAACCTGGACACGTGGAAGTCGAGCCAAGTCAAGGAGCCCCGATGGGCG
TCCGCCAACCTGGGCGTGTTCATCTGCCTTGAGTGCTCGGGGGTTCACCG
TAACCTTGGAGTCCACATCTCTTTCGTCCGGAGTGTCAACCTGGACACGT
GGAAGTCGAGCCAAGTCAAGGGAATGGAGGAAATGGGGAACGAGCGCGCC
AAGGCTCATTTCGAAGCCGGAGTGCCACCTGGTTACCCCGTGCCTCGGGA
GCATGCGACGGTCCGCGAGCGCGAGAAGTGGATTCGAGACAAGTACGAGT
TCCGTCGATTCGTCTCTAGGGATCCTCCTCCCCCACAACGGAATCAAGAT
GACTCCAGCGAGTCGCGATCGTCGAGGCGAGTGTGCGCCAAGGGATCGAG
ATAAGGAATGGAGGAAATGGGGAACGAGCGCGCCAAGGCTCATTTCGAAG
CCGGAGTGCCACCTGGTTACCCCGTGCCTCGGGAGCATGCGACGGTCCGC
GAGCGCGAGAAGTGGATTCGAGACAAGTACGAGTTCCGTCGATTCGTCTC
TAGGGATCCTCCTCCCCCACAACGGAATCAAGATGACTCCAGCGAGTCGC
GATCGTCGAGGCGAGTGTGCGCCAAGGGATCGAGATAA
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