mRNA_H-elongata_contig164367.4064.1 (mRNA) Himanthalia elongata Himel1 dioecious
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Overview
Homology
BLAST of mRNA_H-elongata_contig164367.4064.1 vs. uniprot
Match: D7G615_ECTSI (Alternative oxidase isoform A n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G615_ECTSI) HSP 1 Score: 148 bits (374), Expect = 1.360e-39 Identity = 67/82 (81.71%), Postives = 76/82 (92.68%), Query Frame = 1
Query: 1 RDHGWIHTLLEEAENERMHLLTFLKLKQPGPIFRFMVLLSQGVMFNAFFLTYIVSPKTCHRFVGYIEEEAVHTYSTVRESHD 246
RDHGWIHTLLEEAENERMHLLTFLKLKQPGP+FRF V++SQGVM+NAFFL+Y++SPK CHRFVGYIEEEAVHTY+ + E D
Sbjct: 214 RDHGWIHTLLEEAENERMHLLTFLKLKQPGPVFRFAVMISQGVMYNAFFLSYLISPKACHRFVGYIEEEAVHTYTVLLEDID 295
BLAST of mRNA_H-elongata_contig164367.4064.1 vs. uniprot
Match: A0A6H5KXL8_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KXL8_9PHAE) HSP 1 Score: 148 bits (374), Expect = 1.140e-38 Identity = 67/82 (81.71%), Postives = 76/82 (92.68%), Query Frame = 1
Query: 1 RDHGWIHTLLEEAENERMHLLTFLKLKQPGPIFRFMVLLSQGVMFNAFFLTYIVSPKTCHRFVGYIEEEAVHTYSTVRESHD 246
RDHGWIHTLLEEAENERMHLLTFLKLKQPGP+FRF V++SQGVM+NAFFL+Y++SPK CHRFVGYIEEEAVHTY+ + E D
Sbjct: 231 RDHGWIHTLLEEAENERMHLLTFLKLKQPGPVFRFAVMISQGVMYNAFFLSYLISPKACHRFVGYIEEEAVHTYTVLLEDID 312
BLAST of mRNA_H-elongata_contig164367.4064.1 vs. uniprot
Match: A0A6A4ZNJ6_9STRA (Uncharacterized protein (Fragment) n=1 Tax=Aphanomyces stellatus TaxID=120398 RepID=A0A6A4ZNJ6_9STRA) HSP 1 Score: 134 bits (336), Expect = 1.090e-35 Identity = 61/79 (77.22%), Postives = 69/79 (87.34%), Query Frame = 1
Query: 1 RDHGWIHTLLEEAENERMHLLTFLKLKQPGPIFRFMVLLSQGVMFNAFFLTYIVSPKTCHRFVGYIEEEAVHTYSTVRE 237
RD GWIHTLLEEAENERMHLL F+ LKQPGP+FR +VL QGV FN FFLTY++SPKTCHRFVGY+EEEAVHTY+ + E
Sbjct: 150 RDQGWIHTLLEEAENERMHLLIFMTLKQPGPLFRLLVLGGQGVFFNMFFLTYLISPKTCHRFVGYLEEEAVHTYTAMVE 228
BLAST of mRNA_H-elongata_contig164367.4064.1 vs. uniprot
Match: A0A6A4ZNR9_9STRA (Uncharacterized protein (Fragment) n=1 Tax=Aphanomyces stellatus TaxID=120398 RepID=A0A6A4ZNR9_9STRA) HSP 1 Score: 132 bits (331), Expect = 2.030e-35 Identity = 60/79 (75.95%), Postives = 68/79 (86.08%), Query Frame = 1
Query: 1 RDHGWIHTLLEEAENERMHLLTFLKLKQPGPIFRFMVLLSQGVMFNAFFLTYIVSPKTCHRFVGYIEEEAVHTYSTVRE 237
RD GWIHTLLEEAENERMHLL F+ LKQPGP+FR +VL QGV FN FFL Y++SPKTCHRFVGY+EEEAVHTY+ + E
Sbjct: 52 RDQGWIHTLLEEAENERMHLLIFMTLKQPGPLFRLLVLGGQGVFFNMFFLAYLISPKTCHRFVGYLEEEAVHTYTAMVE 130
BLAST of mRNA_H-elongata_contig164367.4064.1 vs. uniprot
Match: A9URB9_MONBE (Predicted protein (Fragment) n=1 Tax=Monosiga brevicollis TaxID=81824 RepID=A9URB9_MONBE) HSP 1 Score: 130 bits (327), Expect = 1.400e-34 Identity = 60/83 (72.29%), Postives = 73/83 (87.95%), Query Frame = 1
Query: 1 RDHGWIHTLLEEAENERMHLLTFLKLKQPGPIFRFMVLLSQGVMFNAFFLTYIVSPKTCHRFVGYIEEEAVHTYSTVRESHDR 249
RD+GWIHTLLEEAENERMHLLTF K+KQPG IFR MVL +QG+M+NA+F+ Y+VSP+TCHRF+GY+EEEAV TYS E+ D+
Sbjct: 75 RDNGWIHTLLEEAENERMHLLTFTKVKQPGIIFRSMVLAAQGIMWNAYFVAYLVSPRTCHRFIGYLEEEAVKTYSHAIEALDK 157
BLAST of mRNA_H-elongata_contig164367.4064.1 vs. uniprot
Match: A0A813BNK6_9DINO (AlxA protein n=1 Tax=Symbiodinium sp. KB8 TaxID=230985 RepID=A0A813BNK6_9DINO) HSP 1 Score: 129 bits (323), Expect = 1.850e-34 Identity = 58/75 (77.33%), Postives = 70/75 (93.33%), Query Frame = 1
Query: 1 RDHGWIHTLLEEAENERMHLLTFLKLKQPGPIFRFMVLLSQGVMFNAFFLTYIVSPKTCHRFVGYIEEEAVHTYS 225
RD+GWIHTLLEEAENERMHLLTFL+LK+PGP FR +VLL+QGV FN +F++Y++SP+TCHRFVGY+EEEAV TYS
Sbjct: 38 RDYGWIHTLLEEAENERMHLLTFLELKKPGPAFRGLVLLAQGVFFNLYFISYLLSPRTCHRFVGYLEEEAVKTYS 112
BLAST of mRNA_H-elongata_contig164367.4064.1 vs. uniprot
Match: A0A820Q8Q4_9BILA (Hypothetical protein n=1 Tax=Adineta steineri TaxID=433720 RepID=A0A820Q8Q4_9BILA) HSP 1 Score: 126 bits (316), Expect = 2.690e-34 Identity = 59/75 (78.67%), Postives = 67/75 (89.33%), Query Frame = 1
Query: 1 RDHGWIHTLLEEAENERMHLLTFLKLKQPGPIFRFMVLLSQGVMFNAFFLTYIVSPKTCHRFVGYIEEEAVHTYS 225
RDHGWIHTLL EAENERMHLLTFL+L+QPG IFR VLL QGV FNAFFLTY++SP+ CHRFVG++EEEAV TY+
Sbjct: 35 RDHGWIHTLLSEAENERMHLLTFLELRQPGYIFRGFVLLGQGVFFNAFFLTYLLSPQICHRFVGFLEEEAVTTYT 109
BLAST of mRNA_H-elongata_contig164367.4064.1 vs. uniprot
Match: A0A836CI40_9STRA (Alternative oxidase n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CI40_9STRA) HSP 1 Score: 130 bits (327), Expect = 3.570e-33 Identity = 61/90 (67.78%), Postives = 74/90 (82.22%), Query Frame = 1
Query: 1 RDHGWIHTLLEEAENERMHLLTFLKLKQPGPIFRFMVLLSQGVMFNAFFLTYIVSPKTCHRFVGYIEEEAVHTYSTVRESHD--RLDYLE 264
RDHGWIHTLLEEAENERMHLLTFL +K+PGP+FR V +QG+++N FF TY+V+PK CHRFVGYIEEEAVHTY+++ + D RL E
Sbjct: 178 RDHGWIHTLLEEAENERMHLLTFLYMKKPGPVFRIAVTATQGLIWNLFFFTYLVNPKICHRFVGYIEEEAVHTYTSLLKDIDEGRLPMFE 267
BLAST of mRNA_H-elongata_contig164367.4064.1 vs. uniprot
Match: A0A1V9ZPY2_9STRA (Alternative oxidase, mitochondrial n=1 Tax=Thraustotheca clavata TaxID=74557 RepID=A0A1V9ZPY2_9STRA) HSP 1 Score: 129 bits (324), Expect = 4.060e-33 Identity = 58/77 (75.32%), Postives = 67/77 (87.01%), Query Frame = 1
Query: 1 RDHGWIHTLLEEAENERMHLLTFLKLKQPGPIFRFMVLLSQGVMFNAFFLTYIVSPKTCHRFVGYIEEEAVHTYSTV 231
RD GWIHTLLEEAENERMHLL FL +K PGP+FR +VL +QGV FN FFL Y+ SPKTCHRFVGY+EEEAVHTY+++
Sbjct: 153 RDQGWIHTLLEEAENERMHLLIFLNMKSPGPLFRILVLGAQGVFFNMFFLAYLTSPKTCHRFVGYLEEEAVHTYTSL 229
BLAST of mRNA_H-elongata_contig164367.4064.1 vs. uniprot
Match: A0A8J4APH9_9CHLO (Ubiquinol oxidase (Fragment) n=1 Tax=Volvox africanus TaxID=51714 RepID=A0A8J4APH9_9CHLO) HSP 1 Score: 124 bits (310), Expect = 4.190e-33 Identity = 55/82 (67.07%), Postives = 69/82 (84.15%), Query Frame = 1
Query: 1 RDHGWIHTLLEEAENERMHLLTFLKLKQPGPIFRFMVLLSQGVMFNAFFLTYIVSPKTCHRFVGYIEEEAVHTYSTVRESHD 246
RD GWIHTLLEEAENERMHLLTF +L++PGP+FR V+ +QGV FNA+FLTY++SP+TCH F+G++EEEAV TY+ E D
Sbjct: 49 RDQGWIHTLLEEAENERMHLLTFFELRKPGPLFRAAVIAAQGVFFNAYFLTYLLSPRTCHAFIGFLEEEAVKTYTHALEEID 130 The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig164367.4064.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-elongata_contig164367.4064.1 >prot_H-elongata_contig164367.4064.1 ID=prot_H-elongata_contig164367.4064.1|Name=mRNA_H-elongata_contig164367.4064.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=76bp MHLLTFLKLKQPGPIFRFMVLLSQGVMFNAFFLTYIVSPKTCHRFVGYIEback to top mRNA from alignment at H-elongata_contig164367:798..1353+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-elongata_contig164367.4064.1 ID=mRNA_H-elongata_contig164367.4064.1|Name=mRNA_H-elongata_contig164367.4064.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=556bp|location=Sequence derived from alignment at H-elongata_contig164367:798..1353+ (Himanthalia elongata Himel1 dioecious)back to top Coding sequence (CDS) from alignment at H-elongata_contig164367:798..1353+ >mRNA_H-elongata_contig164367.4064.1 ID=mRNA_H-elongata_contig164367.4064.1|Name=mRNA_H-elongata_contig164367.4064.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=456bp|location=Sequence derived from alignment at H-elongata_contig164367:798..1353+ (Himanthalia elongata Himel1 dioecious)back to top |