mRNA_H-elongata_contig163456.4017.1 (mRNA) Himanthalia elongata Himel1 dioecious
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Overview
Homology
BLAST of mRNA_H-elongata_contig163456.4017.1 vs. uniprot
Match: A0A6H5K785_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K785_9PHAE) HSP 1 Score: 167 bits (422), Expect = 5.480e-48 Identity = 81/98 (82.65%), Postives = 91/98 (92.86%), Query Frame = 2
Query: 23 LLGLLLLILAAFAVAPVLVIVLGLMSYVVWWYVSKEGTSFLHHAQEHENRFWTTVAFCFSGALVFVHDSPVALGQWSPTLGFVCVTLFTYTVHSLDRQ 316
L+G+LLLI AA AVAPVLVIVLGLM+YVVWWYVS+E TS++HHAQEHENRFWTTVAFCFSGALVFVHDSPVALGQWSP LGF+ V +FT++VHS DRQ
Sbjct: 19 LVGVLLLIFAALAVAPVLVIVLGLMTYVVWWYVSREDTSYMHHAQEHENRFWTTVAFCFSGALVFVHDSPVALGQWSPVLGFLFVMMFTFSVHSYDRQ 116
BLAST of mRNA_H-elongata_contig163456.4017.1 vs. uniprot
Match: D7G3Z8_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G3Z8_ECTSI) HSP 1 Score: 167 bits (422), Expect = 8.320e-46 Identity = 81/98 (82.65%), Postives = 91/98 (92.86%), Query Frame = 2
Query: 23 LLGLLLLILAAFAVAPVLVIVLGLMSYVVWWYVSKEGTSFLHHAQEHENRFWTTVAFCFSGALVFVHDSPVALGQWSPTLGFVCVTLFTYTVHSLDRQ 316
L+G+LLLI AA AVAPVLVIVLGLM+YVVWWYVS+E TS++HHAQEHENRFWTTVAFCFSGALVFVHDSPVALGQWSP LGF+ V +FT++VHS DRQ
Sbjct: 19 LVGVLLLIFAALAVAPVLVIVLGLMTYVVWWYVSREDTSYMHHAQEHENRFWTTVAFCFSGALVFVHDSPVALGQWSPVLGFLFVMMFTFSVHSYDRQ 116
BLAST of mRNA_H-elongata_contig163456.4017.1 vs. uniprot
Match: F0WSR9_9STRA (Uncharacterized protein AlNc14C237G9414 n=2 Tax=Albugo laibachii Nc14 TaxID=890382 RepID=F0WSR9_9STRA) HSP 1 Score: 94.7 bits (234), Expect = 1.890e-20 Identity = 50/102 (49.02%), Postives = 72/102 (70.59%), Query Frame = 2
Query: 8 TLVVLLLGLLLLILAAFAVAPVLVIVLGLMSYVVWWYVSKEGTSFLHHAQEHENRFWTTVAFCFSGALVFVHDSPVALGQWSPTLGFVCVTLFTYTVHSLDR 313
T++ L+L L+LLILA FA AP+ + Y++ Y+S E ++H AQE ENRFWTT AF FS A++++ DSP+A+G+W P+LG++ VT FT +H LDR
Sbjct: 48 TMITLMLCLILLILAFFAYAPLFCACWCGIMYLIGIYLSNESRWWIHDAQEFENRFWTTTAFLFSTAVMYIRDSPLAIGRWHPSLGWILVTTFTLFIHFLDR 149
BLAST of mRNA_H-elongata_contig163456.4017.1 vs. uniprot
Match: A0A2P4YCM6_9STRA (Uncharacterized protein n=1 Tax=Phytophthora palmivora var. palmivora TaxID=611791 RepID=A0A2P4YCM6_9STRA) HSP 1 Score: 85.1 bits (209), Expect = 2.940e-17 Identity = 49/93 (52.69%), Postives = 63/93 (67.74%), Query Frame = 2
Query: 38 LLILAAFAVAPVLVIV-LGLMSYVVWWYVSKEGTSFLHHAQEHENRFWTTVAFCFSGALVFVHDSPVALGQWSPTLGFVCVTLFTYTVHSLDR 313
LL++A FA AP+L LG+M YV+ Y+S E H AQE ENRFWT AF FS A++++ DSP+A+GQW+ TLG V V FT +VH DR
Sbjct: 71 LLVMAFFAYAPLLCASWLGIM-YVIGLYLSTESNWRWHDAQEFENRFWTGTAFMFSAAVLYIKDSPLAVGQWNSTLGLVLVFGFTMSVHFFDR 162
BLAST of mRNA_H-elongata_contig163456.4017.1 vs. uniprot
Match: A0A7S0FB27_9STRA (Hypothetical protein (Fragment) n=1 Tax=Rhizosolenia setigera TaxID=3005 RepID=A0A7S0FB27_9STRA) HSP 1 Score: 85.5 bits (210), Expect = 3.170e-17 Identity = 48/98 (48.98%), Postives = 64/98 (65.31%), Query Frame = 2
Query: 20 LLLGLLLLILAAFAVAPVLVIVLGLMSYVVWWYVSKEGTSFLHHAQEHENRFWTTVAFCFSGALVFVHDSPVALGQWSPTLGFVCVTLFTYTVHSLDR 313
LL+G+LLL LA F+ APV + Y ++ +V+ E ++ +HHAQE ENRFWT +A FS AL F DSP A+G WSP++GF V Y VH+ DR
Sbjct: 32 LLVGILLLFLAFFSFAPVFCSCTLSLLYTLYLFVAYEESN-IHHAQEFENRFWTILALLFSTALFFAKDSPFAIGNWSPSIGFTLVISIGYGVHAYDR 128
BLAST of mRNA_H-elongata_contig163456.4017.1 vs. uniprot
Match: A0A2D4C4B6_PYTIN (Uncharacterized protein n=1 Tax=Pythium insidiosum TaxID=114742 RepID=A0A2D4C4B6_PYTIN) HSP 1 Score: 85.5 bits (210), Expect = 3.290e-17 Identity = 48/93 (51.61%), Postives = 63/93 (67.74%), Query Frame = 2
Query: 38 LLILAAFAVAPVLVIV-LGLMSYVVWWYVSKEGTSFLHHAQEHENRFWTTVAFCFSGALVFVHDSPVALGQWSPTLGFVCVTLFTYTVHSLDR 313
LL++A FA AP+L + LGL+ Y+V Y+S E H AQE ENRFWT AF FS A++++ DSP+ALG+W+ T G + V FT VH LDR
Sbjct: 89 LLVMAFFAFAPLLCVTSLGLL-YLVGLYLSTESNWRWHDAQEFENRFWTLTAFLFSTAVLYIQDSPIALGRWNATFGMLLVVSFTSGVHFLDR 180
BLAST of mRNA_H-elongata_contig163456.4017.1 vs. uniprot
Match: A0A0P1AH66_PLAHL (Uncharacterized protein n=1 Tax=Plasmopara halstedii TaxID=4781 RepID=A0A0P1AH66_PLAHL) HSP 1 Score: 85.5 bits (210), Expect = 3.300e-17 Identity = 49/94 (52.13%), Postives = 66/94 (70.21%), Query Frame = 2
Query: 38 LLILAAFAVAPVLVIV-LGLMSYVVWWYVSKEGTSFL-HHAQEHENRFWTTVAFCFSGALVFVHDSPVALGQWSPTLGFVCVTLFTYTVHSLDR 313
L+++A FA AP+L +G+M YV+ Y+S E + + H AQE ENRFWT AF FS A+++V DSP+A+GQWS TLG V V +FT +VH DR
Sbjct: 55 LVVMAFFAYAPLLCASWIGIM-YVIGLYLSTESSKWRWHDAQEFENRFWTGTAFLFSAAVLYVKDSPLAVGQWSSTLGLVLVFIFTMSVHFFDR 147
BLAST of mRNA_H-elongata_contig163456.4017.1 vs. uniprot
Match: A0A5D6YA76_9STRA (Uncharacterized protein n=1 Tax=Pythium brassicum TaxID=1485010 RepID=A0A5D6YA76_9STRA) HSP 1 Score: 85.1 bits (209), Expect = 4.510e-17 Identity = 49/93 (52.69%), Postives = 63/93 (67.74%), Query Frame = 2
Query: 38 LLILAAFAVAPVLVIV-LGLMSYVVWWYVSKEGTSFLHHAQEHENRFWTTVAFCFSGALVFVHDSPVALGQWSPTLGFVCVTLFTYTVHSLDR 313
LL++A FA AP+L LG+M YVV Y+S E + H AQE ENRFWT AF FS AL+++ DSP A+G+W+ +LG + V FT VH LDR
Sbjct: 73 LLVMAFFAYAPLLCASWLGIM-YVVGLYLSTESNWWWHDAQEFENRFWTFTAFMFSSALLYIKDSPFAVGRWNASLGMLLVLFFTAGVHFLDR 164
BLAST of mRNA_H-elongata_contig163456.4017.1 vs. uniprot
Match: A0A662X9P1_9STRA (Uncharacterized protein n=2 Tax=Nothophytophthora sp. Chile5 TaxID=2483409 RepID=A0A662X9P1_9STRA) HSP 1 Score: 84.7 bits (208), Expect = 6.150e-17 Identity = 48/93 (51.61%), Postives = 63/93 (67.74%), Query Frame = 2
Query: 38 LLILAAFAVAPVLVIV-LGLMSYVVWWYVSKEGTSFLHHAQEHENRFWTTVAFCFSGALVFVHDSPVALGQWSPTLGFVCVTLFTYTVHSLDR 313
L+++A FA AP+L LG+M YV+ Y+S E H AQE ENRFWT AF FS A++++ DSP+A+GQW+ TLG V V FT +VH DR
Sbjct: 72 LVVMAFFAYAPLLCASWLGIM-YVIGLYLSTESNWRWHDAQEFENRFWTGTAFLFSAAVLYIKDSPLAVGQWNSTLGLVLVFSFTMSVHYFDR 163
BLAST of mRNA_H-elongata_contig163456.4017.1 vs. uniprot
Match: A0A225WYB2_9STRA (Uncharacterized protein n=1 Tax=Phytophthora megakarya TaxID=4795 RepID=A0A225WYB2_9STRA) HSP 1 Score: 84.3 bits (207), Expect = 8.390e-17 Identity = 49/93 (52.69%), Postives = 63/93 (67.74%), Query Frame = 2
Query: 38 LLILAAFAVAPVLVIV-LGLMSYVVWWYVSKEGTSFLHHAQEHENRFWTTVAFCFSGALVFVHDSPVALGQWSPTLGFVCVTLFTYTVHSLDR 313
L+I+A FA AP+L LG+M YV+ Y+S E H AQE ENRFWT AF FS A++++ DSP+A+GQW+ TLG V V FT +VH DR
Sbjct: 65 LVIMAFFAYAPLLCASWLGIM-YVIGLYLSTESNWRWHDAQEFENRFWTGTAFMFSAAVLYIKDSPLAVGQWNSTLGLVLVFGFTMSVHFFDR 156 The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig163456.4017.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-elongata_contig163456.4017.1 >prot_H-elongata_contig163456.4017.1 ID=prot_H-elongata_contig163456.4017.1|Name=mRNA_H-elongata_contig163456.4017.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=106bp PRDSGGVTLGAAAAHLGGVCGSPGPGDRSGANVIRGVVVRVQGGHFFPASback to top mRNA from alignment at H-elongata_contig163456:405..1242- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-elongata_contig163456.4017.1 ID=mRNA_H-elongata_contig163456.4017.1|Name=mRNA_H-elongata_contig163456.4017.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=838bp|location=Sequence derived from alignment at H-elongata_contig163456:405..1242- (Himanthalia elongata Himel1 dioecious)back to top Coding sequence (CDS) from alignment at H-elongata_contig163456:405..1242- >mRNA_H-elongata_contig163456.4017.1 ID=mRNA_H-elongata_contig163456.4017.1|Name=mRNA_H-elongata_contig163456.4017.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=636bp|location=Sequence derived from alignment at H-elongata_contig163456:405..1242- (Himanthalia elongata Himel1 dioecious)back to top |