mRNA_H-elongata_contig163388.4015.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig163388.4015.1
Unique NamemRNA_H-elongata_contig163388.4015.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
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BLAST of mRNA_H-elongata_contig163388.4015.1 vs. uniprot
Match: D7FQV6_ECTSI (MPN domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FQV6_ECTSI)

HSP 1 Score: 115 bits (289), Expect = 2.050e-29
Identity = 56/65 (86.15%), Postives = 60/65 (92.31%), Query Frame = 1 
Query:    1 RRFCPEPVYVIIDVRPGVEGIPTTAYITTEEVEADGKEIQKTFKHLSSSVGALEAEEVGVADLLR 195
            +RFCP PVYVIIDVRP VEGIPTTAY+T EEVEADGKEIQKTFKH++SSVGALEAEEVGV  LLR
Sbjct:  176 KRFCPNPVYVIIDVRPDVEGIPTTAYVTAEEVEADGKEIQKTFKHVASSVGALEAEEVGVEHLLR 240
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BLAST of mRNA_H-elongata_contig163388.4015.1 vs. uniprot
Match: A0A7S2SA56_9STRA (Hypothetical protein n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2SA56_9STRA)

HSP 1 Score: 107 bits (268), Expect = 1.360e-26
Identity = 51/65 (78.46%), Postives = 58/65 (89.23%), Query Frame = 1 
Query:    1 RRFCPEPVYVIIDVRPGVEGIPTTAYITTEEVEADGKEIQKTFKHLSSSVGALEAEEVGVADLLR 195
            RRFCP PV+VIIDVRP VEGIPTTAY++ EEVE+DGKEIQ++FKH+ SSVGA EAEEVGV  LLR
Sbjct:  126 RRFCPNPVFVIIDVRPDVEGIPTTAYLSVEEVESDGKEIQRSFKHIPSSVGAFEAEEVGVEHLLR 190
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BLAST of mRNA_H-elongata_contig163388.4015.1 vs. uniprot
Match: A0A6S9JFQ0_HETAK (Hypothetical protein n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A6S9JFQ0_HETAK)

HSP 1 Score: 103 bits (258), Expect = 3.480e-25
Identity = 49/65 (75.38%), Postives = 57/65 (87.69%), Query Frame = 1 
Query:    1 RRFCPEPVYVIIDVRPGVEGIPTTAYITTEEVEADGKEIQKTFKHLSSSVGALEAEEVGVADLLR 195
            RRFCP PVYVIIDVRP +EG+PTTAY + EEVEA+GKE+Q+ F+HL S+VGALEAEEVGV  LLR
Sbjct:  129 RRFCPSPVYVIIDVRPELEGLPTTAYHSVEEVEAEGKEVQRAFRHLPSAVGALEAEEVGVEHLLR 193
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BLAST of mRNA_H-elongata_contig163388.4015.1 vs. uniprot
Match: A0A7S2XZZ4_9STRA (Hypothetical protein n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2XZZ4_9STRA)

HSP 1 Score: 103 bits (257), Expect = 5.520e-25
Identity = 51/64 (79.69%), Postives = 55/64 (85.94%), Query Frame = 1 
Query:    4 RFCPEPVYVIIDVRPGVEGIPTTAYITTEEVEADGKEIQKTFKHLSSSVGALEAEEVGVADLLR 195
            RFC  PV VIIDVRPGVEG+PTTAY   EEVEADGKEIQKTFKH++ S+GALEAEEVGV  LLR
Sbjct:  139 RFCTHPVCVIIDVRPGVEGLPTTAYRAREEVEADGKEIQKTFKHVACSIGALEAEEVGVEHLLR 202
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BLAST of mRNA_H-elongata_contig163388.4015.1 vs. uniprot
Match: A0A7S2H307_9STRA (Hypothetical protein n=1 Tax=Dictyocha speculum TaxID=35687 RepID=A0A7S2H307_9STRA)

HSP 1 Score: 102 bits (253), Expect = 1.620e-24
Identity = 48/65 (73.85%), Postives = 56/65 (86.15%), Query Frame = 1 
Query:    1 RRFCPEPVYVIIDVRPGVEGIPTTAYITTEEVEADGKEIQKTFKHLSSSVGALEAEEVGVADLLR 195
            RRFCP P +VIIDVRP VE IPTTAY++ EEVE+DGKEIQ++FKH+ SSVGA +AEEVGV  LLR
Sbjct:  121 RRFCPNPAFVIIDVRPHVENIPTTAYLSVEEVESDGKEIQRSFKHIPSSVGAYQAEEVGVEHLLR 185
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BLAST of mRNA_H-elongata_contig163388.4015.1 vs. uniprot
Match: A0A835Z1W9_9STRA (26S proteasome non-ATPase regulatory subunit 7 n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z1W9_9STRA)

HSP 1 Score: 101 bits (252), Expect = 2.980e-24
Identity = 48/65 (73.85%), Postives = 56/65 (86.15%), Query Frame = 1 
Query:    1 RRFCPEPVYVIIDVRPGVEGIPTTAYITTEEVEADGKEIQKTFKHLSSSVGALEAEEVGVADLLR 195
            +RFC +P+YVI+DVR GVEG+PTTAY T EEVE +GKEIQ TFKH+ SS+GALEAEEVGV  LLR
Sbjct:  136 KRFCSDPLYVIVDVRTGVEGMPTTAYRTAEEVEGEGKEIQTTFKHVPSSIGALEAEEVGVEHLLR 200
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BLAST of mRNA_H-elongata_contig163388.4015.1 vs. uniprot
Match: A0A7S1UK57_9STRA (Hypothetical protein n=1 Tax=Phaeomonas parva TaxID=124430 RepID=A0A7S1UK57_9STRA)

HSP 1 Score: 99.0 bits (245), Expect = 2.630e-23
Identity = 44/65 (67.69%), Postives = 56/65 (86.15%), Query Frame = 1 
Query:    1 RRFCPEPVYVIIDVRPGVEGIPTTAYITTEEVEADGKEIQKTFKHLSSSVGALEAEEVGVADLLR 195
            RR+CPEPV+VIIDVRPGV GIPT AY++ ++VE DGKE+ +TF+H+ S++GA EAEEVGV  LLR
Sbjct:  132 RRYCPEPVFVIIDVRPGVSGIPTKAYVSQQDVEQDGKEMSRTFRHIPSTIGAQEAEEVGVEHLLR 196
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BLAST of mRNA_H-elongata_contig163388.4015.1 vs. uniprot
Match: A0A067D158_SAPPC (MPN domain-containing protein n=4 Tax=Saprolegniaceae TaxID=4764 RepID=A0A067D158_SAPPC)

HSP 1 Score: 95.5 bits (236), Expect = 3.500e-22
Identity = 45/65 (69.23%), Postives = 53/65 (81.54%), Query Frame = 1 
Query:    1 RRFCPEPVYVIIDVRPGVEGIPTTAYITTEEVEADGKEIQKTFKHLSSSVGALEAEEVGVADLLR 195
            RR+CP PV VI DVRP VEG+PTTAY + EEVE DGK I++TFKH+ S++GA EAEEVGV  LLR
Sbjct:  117 RRYCPNPVLVICDVRPNVEGLPTTAYGSIEEVEEDGKAIKRTFKHIKSTIGAYEAEEVGVEHLLR 181
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BLAST of mRNA_H-elongata_contig163388.4015.1 vs. uniprot
Match: H3G7T3_PHYRM (MPN domain-containing protein n=17 Tax=Peronosporaceae TaxID=4777 RepID=H3G7T3_PHYRM)

HSP 1 Score: 94.7 bits (234), Expect = 4.360e-22
Identity = 45/65 (69.23%), Postives = 53/65 (81.54%), Query Frame = 1 
Query:    1 RRFCPEPVYVIIDVRPGVEGIPTTAYITTEEVEADGKEIQKTFKHLSSSVGALEAEEVGVADLLR 195
            RR+CP PV VI DVRP VEG+PTTAY + EEVE DGK I++ FKH++S+VGA EAEEVGV  LLR
Sbjct:  106 RRYCPNPVLVICDVRPSVEGLPTTAYGSVEEVEEDGKAIKRVFKHITSTVGAYEAEEVGVEHLLR 170
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BLAST of mRNA_H-elongata_contig163388.4015.1 vs. uniprot
Match: A0A2D4CCS2_PYTIN (26S proteasome non-ATPase regulatory subunit 7 n=2 Tax=Pythium TaxID=4797 RepID=A0A2D4CCS2_PYTIN)

HSP 1 Score: 95.5 bits (236), Expect = 4.490e-22
Identity = 45/65 (69.23%), Postives = 53/65 (81.54%), Query Frame = 1 
Query:    1 RRFCPEPVYVIIDVRPGVEGIPTTAYITTEEVEADGKEIQKTFKHLSSSVGALEAEEVGVADLLR 195
            RR+CP PV VI DVRP VEG+PTTAY + EEVE DGK I++TFKH+ S++GA EAEEVGV  LLR
Sbjct:  117 RRYCPNPVLVICDVRPNVEGLPTTAYGSIEEVEEDGKAIKRTFKHIKSTIGAYEAEEVGVEHLLR 181
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig163388.4015.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FQV6_ECTSI2.050e-2986.15MPN domain-containing protein n=2 Tax=Ectocarpus T... [more]
A0A7S2SA56_9STRA1.360e-2678.46Hypothetical protein n=1 Tax=Rhizochromulina marin... [more]
A0A6S9JFQ0_HETAK3.480e-2575.38Hypothetical protein n=1 Tax=Heterosigma akashiwo ... [more]
A0A7S2XZZ4_9STRA5.520e-2579.69Hypothetical protein n=1 Tax=Fibrocapsa japonica T... [more]
A0A7S2H307_9STRA1.620e-2473.85Hypothetical protein n=1 Tax=Dictyocha speculum Ta... [more]
A0A835Z1W9_9STRA2.980e-2473.8526S proteasome non-ATPase regulatory subunit 7 n=1... [more]
A0A7S1UK57_9STRA2.630e-2367.69Hypothetical protein n=1 Tax=Phaeomonas parva TaxI... [more]
A0A067D158_SAPPC3.500e-2269.23MPN domain-containing protein n=4 Tax=Saprolegniac... [more]
H3G7T3_PHYRM4.360e-2269.23MPN domain-containing protein n=17 Tax=Peronospora... [more]
A0A2D4CCS2_PYTIN4.490e-2269.2326S proteasome non-ATPase regulatory subunit 7 n=2... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig163388contigH-elongata_contig163388:756..1437 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score116.3
Seed ortholog evalue5.3e-24
Seed eggNOG ortholog2880.D7FQV6
Preferred namePSMD7
KEGG koko:K03038,ko:K08825,ko:K20306
KEGG Pathwayko03050,ko05169,map03050,map05169
KEGG ModuleM00341
GOsGO:0000003,GO:0000502,GO:0001775,GO:0002252,GO:0002263,GO:0002274,GO:0002275,GO:0002283,GO:0002366,GO:0002376,GO:0002443,GO:0002444,GO:0002446,GO:0003006,GO:0003674,GO:0005488,GO:0005515,GO:0005575,GO:0005576,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0005737,GO:0005819,GO:0005829,GO:0005838,GO:0005856,GO:0006464,GO:0006508,GO:0006511,GO:0006807,GO:0006810,GO:0006887,GO:0006950,GO:0006952,GO:0006955,GO:0007088,GO:0007275,GO:0007346,GO:0008150,GO:0008152,GO:0008541,GO:0009056,GO:0009057,GO:0009653,GO:0009790,GO:0009791,GO:0009793,GO:0009896,GO:0009965,GO:0009987,GO:0010016,GO:0010154,GO:0010498,GO:0010564,GO:0010638,GO:0010965,GO:0012505,GO:0015630,GO:0016192,GO:0016579,GO:0019538,GO:0019941,GO:0022414,GO:0022624,GO:0030071,GO:0030141,GO:0030163,GO:0030425,GO:0031331,GO:0031410,GO:0031597,GO:0031974,GO:0031981,GO:0031982,GO:0031983,GO:0032270,GO:0032436,GO:0032501,GO:0032502,GO:0032940,GO:0032991,GO:0033043,GO:0033044,GO:0033045,GO:0033047,GO:0034515,GO:0034774,GO:0036211,GO:0036230,GO:0036477,GO:0042119,GO:0042802,GO:0042803,GO:0042995,GO:0043005,GO:0043161,GO:0043170,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0043299,GO:0043312,GO:0043412,GO:0043632,GO:0043687,GO:0044237,GO:0044238,GO:0044248,GO:0044257,GO:0044260,GO:0044265,GO:0044267,GO:0044422,GO:0044424,GO:0044428,GO:0044430,GO:0044433,GO:0044444,GO:0044445,GO:0044446,GO:0044463,GO:0044464,GO:0045055,GO:0045087,GO:0045321,GO:0045732,GO:0045787,GO:0045840,GO:0045842,GO:0045862,GO:0045931,GO:0046903,GO:0046983,GO:0048316,GO:0048366,GO:0048367,GO:0048518,GO:0048522,GO:0048608,GO:0048731,GO:0048827,GO:0048856,GO:0050789,GO:0050794,GO:0050896,GO:0051128,GO:0051130,GO:0051179,GO:0051233,GO:0051234,GO:0051247,GO:0051603,GO:0051726,GO:0051781,GO:0051783,GO:0051785,GO:0051983,GO:0051984,GO:0060205,GO:0061458,GO:0062033,GO:0065007,GO:0070013,GO:0070646,GO:0070647,GO:0071704,GO:0072686,GO:0090068,GO:0097447,GO:0097458,GO:0097708,GO:0099402,GO:0099503,GO:0101002,GO:0120025,GO:0120038,GO:1901564,GO:1901565,GO:1901575,GO:1901800,GO:1901970,GO:1901987,GO:1901989,GO:1901990,GO:1901992,GO:1902099,GO:1902101,GO:1902494,GO:1903052,GO:1903364,GO:1904813,GO:1905368,GO:1905369,GO:1905392,GO:1905818,GO:1905820,GO:1990023,GO:2001252
EggNOG free text desc.proteasome-mediated ubiquitin-dependent protein catabolic process
EggNOG OGsCOG1310@1,KOG1556@2759
EC2.7.12.1
COG Functional cat.Z
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00002,ko01000,ko01001,ko03051,ko04131
Hectar predicted targeting categoryother localisation
Exons2
Model size195
Cds size195
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929956.529614-CDS-H-elongata_contig163388:755..9061622929956.529614-CDS-H-elongata_contig163388:755..906Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig163388 756..906 +
1691679222.8424292-CDS-H-elongata_contig163388:755..9061691679222.8424292-CDS-H-elongata_contig163388:755..906Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig163388 756..906 +
1622929956.5440397-CDS-H-elongata_contig163388:1393..14371622929956.5440397-CDS-H-elongata_contig163388:1393..1437Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig163388 1394..1437 +
1691679222.859796-CDS-H-elongata_contig163388:1393..14371691679222.859796-CDS-H-elongata_contig163388:1393..1437Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig163388 1394..1437 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig163388.4015.1prot_H-elongata_contig163388.4015.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig163388 756..1437 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig163388.4015.1

>prot_H-elongata_contig163388.4015.1 ID=prot_H-elongata_contig163388.4015.1|Name=mRNA_H-elongata_contig163388.4015.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=65bp
RRFCPEPVYVIIDVRPGVEGIPTTAYITTEEVEADGKEIQKTFKHLSSSV
GALEAEEVGVADLLR
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mRNA from alignment at H-elongata_contig163388:756..1437+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig163388.4015.1 ID=mRNA_H-elongata_contig163388.4015.1|Name=mRNA_H-elongata_contig163388.4015.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=682bp|location=Sequence derived from alignment at H-elongata_contig163388:756..1437+ (Himanthalia elongata Himel1 dioecious)
AGGCGTTTTTGTCCGGAGCCCGTTTACGTTATCATCGACGTGCGCCCGGG
CGTGGAGGGCATCCCCACGACGGCTTACATCACCACGGAAGAGGTTGAAG
CGGATGGAAAAGAGATTCAGAAGACCTTCAAGCATCTCTCGTCTAGCGTA
GGTGGGTGGGTGCGTTTGGAAAAAAAAATGCGGTAAACTTGAAAAATTTA
CGTCCCTCCCCCCCCGTATATGGGTGGAACTAATGGCTTCAAAATCGCAG
ATTTTGGGATGGAAGCAGAAAAAAGAAAAGCTGATCTGGTAGAAAAACGC
CTCGTGCGTGCGGTCGCGTGTTATGACGGATGCGAGGTACTATTGAGTGT
CTATCTTGGAAGGCTTTTTTTACGGTGCGGGCGGGATGAGGGGGTGGGTG
GAGTTGCAATACATTTTGGCTTTGGAAGTTTTGATAGGCGGGAGAAGGAA
TCTCTGGGACATTGGGGTATAGAATTTTCGAAAGTGTCTTGATTTTCACA
TGATCCACGCTTCTTCCGATTTGGGTCTCTGGGGTTGGATGTAGAAAGTC
GGGGGGTTTTCCCCCCGATGTACCCTTGTTTCAAAACATAGGATATCTTC
GGCGTATCCTCATATGATTCCCCTTTTCTGTGTTCCAGGTGCGTTAGAGG
CCGAGGAAGTGGGTGTGGCGGACCTCCTGCGG
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Coding sequence (CDS) from alignment at H-elongata_contig163388:756..1437+

>mRNA_H-elongata_contig163388.4015.1 ID=mRNA_H-elongata_contig163388.4015.1|Name=mRNA_H-elongata_contig163388.4015.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=390bp|location=Sequence derived from alignment at H-elongata_contig163388:756..1437+ (Himanthalia elongata Himel1 dioecious)
AGGCGTTTTTGTCCGGAGCCCGTTTACGTTATCATCGACGTGCGCCCGGG
CGTGGAGGGCATCCCCACGACGGCTTACATCACCACGGAAGAGGTTGAAG
CGGATGGAAAAGAGATTCAGAAGACCTTCAAGCATCTCTCGTCTAGCGTA
GAGGCGTTTTTGTCCGGAGCCCGTTTACGTTATCATCGACGTGCGCCCGG
GCGTGGAGGGCATCCCCACGACGGCTTACATCACCACGGAAGAGGTTGAA
GCGGATGGAAAAGAGATTCAGAAGACCTTCAAGCATCTCTCGTCTAGCGT
AGGTGCGTTAGAGGCCGAGGAAGTGGGTGTGGCGGACCTCCTGCGGGTGC
GTTAGAGGCCGAGGAAGTGGGTGTGGCGGACCTCCTGCGG
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