mRNA_H-elongata_contig16329.4011.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig16329.4011.1
Unique NamemRNA_H-elongata_contig16329.4011.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
[Close]
BLAST of mRNA_H-elongata_contig16329.4011.1 vs. uniprot
Match: D7FKE1_ECTSI (AP-1 complex subunit gamma n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FKE1_ECTSI)

HSP 1 Score: 185 bits (469), Expect = 3.440e-53
Identity = 95/99 (95.96%), Postives = 98/99 (98.99%), Query Frame = 1 
Query:    1 QQRVDKELANIRNKFSSSSGLSSYNRKKYVWKLVYMFMLGYEIDFGHMEMISLISSTRYSEKNVGYIAVSLLLRSGDHMMTLVINSIRNDLNSHSSPAQ 297
            QQRVDKELANIRNKFSSSSGLSSYNRKKYVWKLVYMFMLGYEIDFGHMEMISLISST+YSEKNVGY+AVSLLLRSGD MM+LVINSIRNDLNSHSSPAQ
Sbjct:   40 QQRVDKELANIRNKFSSSSGLSSYNRKKYVWKLVYMFMLGYEIDFGHMEMISLISSTKYSEKNVGYVAVSLLLRSGDTMMSLVINSIRNDLNSHSSPAQ 138
[Close]
BLAST of mRNA_H-elongata_contig16329.4011.1 vs. uniprot
Match: A0A6H5L7E0_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L7E0_9PHAE)

HSP 1 Score: 184 bits (466), Expect = 7.530e-52
Identity = 94/99 (94.95%), Postives = 98/99 (98.99%), Query Frame = 1 
Query:    1 QQRVDKELANIRNKFSSSSGLSSYNRKKYVWKLVYMFMLGYEIDFGHMEMISLISSTRYSEKNVGYIAVSLLLRSGDHMMTLVINSIRNDLNSHSSPAQ 297
            QQRVDKELANIRNKFSSSSGLSSYNRKKYVWKLVYMFMLGYEIDFGHMEMISLI+ST+YSEKNVGY+AVSLLLRSGD MM+LVINSIRNDLNSHSSPAQ
Sbjct:   40 QQRVDKELANIRNKFSSSSGLSSYNRKKYVWKLVYMFMLGYEIDFGHMEMISLINSTKYSEKNVGYVAVSLLLRSGDTMMSLVINSIRNDLNSHSSPAQ 138
[Close]
BLAST of mRNA_H-elongata_contig16329.4011.1 vs. uniprot
Match: A0A836C8G3_9STRA (AP-1 complex subunit gamma n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836C8G3_9STRA)

HSP 1 Score: 158 bits (399), Expect = 3.790e-43
Identity = 79/99 (79.80%), Postives = 91/99 (91.92%), Query Frame = 1 
Query:    1 QQRVDKELANIRNKFSSSSGLSSYNRKKYVWKLVYMFMLGYEIDFGHMEMISLISSTRYSEKNVGYIAVSLLLRSGDHMMTLVINSIRNDLNSHSSPAQ 297
            Q RVDKELAN+R KFSS+ GL+SY +KKYVWKLVY++MLGYE++FGHMEMISLISS ++SEK VGYIAVSLLLRSGD MMTLVINS+RNDL SHS+PAQ
Sbjct:   64 QARVDKELANVRAKFSSTGGLTSYRKKKYVWKLVYIYMLGYEVEFGHMEMISLISSPKHSEKAVGYIAVSLLLRSGDEMMTLVINSMRNDLQSHSNPAQ 162
[Close]
BLAST of mRNA_H-elongata_contig16329.4011.1 vs. uniprot
Match: A0A7S3YMV4_HETAK (Hypothetical protein (Fragment) n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3YMV4_HETAK)

HSP 1 Score: 138 bits (348), Expect = 2.270e-39
Identity = 65/89 (73.03%), Postives = 81/89 (91.01%), Query Frame = 1 
Query:    7 RVDKELANIRNKFSSSSGLSSYNRKKYVWKLVYMFMLGYEIDFGHMEMISLISSTRYSEKNVGYIAVSLLLRSGDHMMTLVINSIRNDL 273
            RVD ELA IRNKF+ S G+ +Y+++KYVWKLVY++MLGYE+DFGHME+ISLI+S++Y EK VGY+A+SLLL+SGD MMTLVINSIRNDL
Sbjct:   26 RVDIELAKIRNKFAGSGGMGAYSKRKYVWKLVYIYMLGYEVDFGHMEVISLITSSKYQEKTVGYVAMSLLLKSGDEMMTLVINSIRNDL 114
[Close]
BLAST of mRNA_H-elongata_contig16329.4011.1 vs. uniprot
Match: A0A7S1BCA8_9STRA (AP-2 complex subunit alpha n=1 Tax=Corethron hystrix TaxID=216773 RepID=A0A7S1BCA8_9STRA)

HSP 1 Score: 140 bits (352), Expect = 1.750e-36
Identity = 67/90 (74.44%), Postives = 81/90 (90.00%), Query Frame = 1 
Query:    4 QRVDKELANIRNKFSSSSGLSSYNRKKYVWKLVYMFMLGYEIDFGHMEMISLISSTRYSEKNVGYIAVSLLLRSGDHMMTLVINSIRNDL 273
            QRVDKELANIR KF+ SS LSSY RKKYVWKLVY+FMLGY++DFGH E+I+L++S +YSEK VGY+A+SLLL+ GD M++LVINSIRNDL
Sbjct:   27 QRVDKELANIRKKFTGSSSLSSYQRKKYVWKLVYIFMLGYDVDFGHSEVITLVASGKYSEKQVGYVALSLLLKGGDQMLSLVINSIRNDL 116
[Close]
BLAST of mRNA_H-elongata_contig16329.4011.1 vs. uniprot
Match: W7TFV9_9STRA (AP-2 complex subunit alpha n=2 Tax=Monodopsidaceae TaxID=425072 RepID=W7TFV9_9STRA)

HSP 1 Score: 139 bits (350), Expect = 3.260e-36
Identity = 67/96 (69.79%), Postives = 86/96 (89.58%), Query Frame = 1 
Query:    1 QQRVDKELANIRNKFSSSSGLSSYNRKKYVWKLVYMFMLGYEIDFGHMEMISLISSTRYSEKNVGYIAVSLLLRSGDHMMTLVINSIRNDLNSHSS 288
            Q R+DKELANIR+KFSS + LS Y RKKYVWKLVY+F LGYE+DFGHME+I+LISS ++SEK+VGY+AVSLL+++ + MMTLV+NS+RNDL SH++
Sbjct:   87 QMRIDKELANIRHKFSSPATLSPYQRKKYVWKLVYIFTLGYEVDFGHMEIIALISSGKFSEKSVGYVAVSLLMKADNEMMTLVVNSVRNDLLSHNN 182
[Close]
BLAST of mRNA_H-elongata_contig16329.4011.1 vs. uniprot
Match: A0A7S2PPT4_9STRA (Hypothetical protein (Fragment) n=1 Tax=Leptocylindrus danicus TaxID=163516 RepID=A0A7S2PPT4_9STRA)

HSP 1 Score: 130 bits (327), Expect = 5.420e-36
Identity = 64/94 (68.09%), Postives = 82/94 (87.23%), Query Frame = 1 
Query:    7 RVDKELANIRNKFSSSSGLSSYNRKKYVWKLVYMFMLGYEIDFGHMEMISLISSTRYSEKNVGYIAVSLLLRSGDHMMTLVINSIRNDLNSHSS 288
            RVDKELANIR KF  SS LSSY RKKYVWKLVY+ +LGY++DFGH E++SL+SS+++SEK VGY+A+SLLLR GD M++LV+N+IRNDL + S+
Sbjct:   27 RVDKELANIRKKFLGSS-LSSYQRKKYVWKLVYIHVLGYDVDFGHSEVVSLVSSSKFSEKQVGYVALSLLLRGGDQMLSLVVNAIRNDLTTSSN 119
[Close]
BLAST of mRNA_H-elongata_contig16329.4011.1 vs. uniprot
Match: A0A7S3M320_9STRA (AP-2 complex subunit alpha n=1 Tax=Spumella elongata TaxID=89044 RepID=A0A7S3M320_9STRA)

HSP 1 Score: 134 bits (336), Expect = 2.520e-34
Identity = 63/89 (70.79%), Postives = 80/89 (89.89%), Query Frame = 1 
Query:    7 RVDKELANIRNKFSSSSGLSSYNRKKYVWKLVYMFMLGYEIDFGHMEMISLISSTRYSEKNVGYIAVSLLLRSGDHMMTLVINSIRNDL 273
            RVDKELANIR KF++SS LSS ++KKYVWK+ YM+MLGY+IDFGH+E ISL+SST++ EK+VGY+A SL+LR GD +MTLV+NS+RNDL
Sbjct:   63 RVDKELANIRQKFANSSSLSSRDKKKYVWKMCYMYMLGYDIDFGHLEFISLLSSTKFQEKSVGYMAFSLMLRPGDELMTLVVNSMRNDL 151
[Close]
BLAST of mRNA_H-elongata_contig16329.4011.1 vs. uniprot
Match: A0A482T160_9ARCH (Uncharacterized protein n=1 Tax=archaeon TaxID=1906665 RepID=A0A482T160_9ARCH)

HSP 1 Score: 132 bits (333), Expect = 6.380e-34
Identity = 61/97 (62.89%), Postives = 82/97 (84.54%), Query Frame = 1 
Query:    7 RVDKELANIRNKFSSSSGLSSYNRKKYVWKLVYMFMLGYEIDFGHMEMISLISSTRYSEKNVGYIAVSLLLRSGDHMMTLVINSIRNDLNSHSSPAQ 297
            RVDKELANIRNKF++S+ L+SY++KKYVWKL Y++MLGYE+DFGH+E ISL+SST+Y+EK VGY+A S++ R GD +M L +NS+RND+  H+   Q
Sbjct:   33 RVDKELANIRNKFATSANLTSYDKKKYVWKLCYIYMLGYEVDFGHVEFISLLSSTKYTEKAVGYMAFSMMFRPGDELMALAVNSMRNDVIGHAHHGQ 129
[Close]
BLAST of mRNA_H-elongata_contig16329.4011.1 vs. uniprot
Match: A0A7R9UPL6_DIALT (Hypothetical protein (Fragment) n=2 Tax=Diacronema lutheri TaxID=2081491 RepID=A0A7R9UPL6_DIALT)

HSP 1 Score: 132 bits (332), Expect = 6.470e-34
Identity = 63/91 (69.23%), Postives = 76/91 (83.52%), Query Frame = 1 
Query:    1 QQRVDKELANIRNKFSSSSGLSSYNRKKYVWKLVYMFMLGYEIDFGHMEMISLISSTRYSEKNVGYIAVSLLLRSGDHMMTLVINSIRNDL 273
            Q+R+DKE+ANIR KF+    L+ Y RKKYVWK++YMFMLGYEIDFGHME + LISS RYSEK VGY+A SLLLR GD ++ L+INSI+NDL
Sbjct:   40 QKRIDKEMANIRQKFAKPQDLNGYQRKKYVWKILYMFMLGYEIDFGHMESVGLISSPRYSEKMVGYMACSLLLREGDDLLRLIINSIKNDL 130
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig16329.4011.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FKE1_ECTSI3.440e-5395.96AP-1 complex subunit gamma n=1 Tax=Ectocarpus sili... [more]
A0A6H5L7E0_9PHAE7.530e-5294.95Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A836C8G3_9STRA3.790e-4379.80AP-1 complex subunit gamma n=1 Tax=Tribonema minus... [more]
A0A7S3YMV4_HETAK2.270e-3973.03Hypothetical protein (Fragment) n=1 Tax=Heterosigm... [more]
A0A7S1BCA8_9STRA1.750e-3674.44AP-2 complex subunit alpha n=1 Tax=Corethron hystr... [more]
W7TFV9_9STRA3.260e-3669.79AP-2 complex subunit alpha n=2 Tax=Monodopsidaceae... [more]
A0A7S2PPT4_9STRA5.420e-3668.09Hypothetical protein (Fragment) n=1 Tax=Leptocylin... [more]
A0A7S3M320_9STRA2.520e-3470.79AP-2 complex subunit alpha n=1 Tax=Spumella elonga... [more]
A0A482T160_9ARCH6.380e-3462.89Uncharacterized protein n=1 Tax=archaeon TaxID=190... [more]
A0A7R9UPL6_DIALT6.470e-3469.23Hypothetical protein (Fragment) n=2 Tax=Diacronema... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig16329contigH-elongata_contig16329:4197..7325 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score187.2
Seed ortholog evalue3.7e-45
Seed eggNOG ortholog2880.D7FKE1
Preferred nameAP2A2
KEGG koko:K11824
KEGG Pathwayko04144,ko04721,ko04961,ko05016,map04144,map04721,map04961,map05016
GOsGO:0000003,GO:0000278,GO:0000281,GO:0000323,GO:0000331,GO:0000910,GO:0001775,GO:0002064,GO:0002065,GO:0002066,GO:0002252,GO:0002263,GO:0002274,GO:0002275,GO:0002283,GO:0002366,GO:0002376,GO:0002443,GO:0002444,GO:0002446,GO:0002478,GO:0002495,GO:0002504,GO:0002682,GO:0003006,GO:0003674,GO:0005102,GO:0005215,GO:0005488,GO:0005515,GO:0005543,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005764,GO:0005765,GO:0005768,GO:0005773,GO:0005774,GO:0005794,GO:0005798,GO:0005829,GO:0005886,GO:0005905,GO:0005938,GO:0006109,GO:0006807,GO:0006810,GO:0006884,GO:0006886,GO:0006887,GO:0006892,GO:0006895,GO:0006897,GO:0006898,GO:0006950,GO:0006955,GO:0006970,GO:0006971,GO:0007049,GO:0007154,GO:0007165,GO:0007166,GO:0007167,GO:0007169,GO:0007267,GO:0007275,GO:0007276,GO:0007281,GO:0007292,GO:0007399,GO:0008021,GO:0008022,GO:0008104,GO:0008150,GO:0008152,GO:0008289,GO:0008356,GO:0008361,GO:0008565,GO:0009056,GO:0009057,GO:0009628,GO:0009790,GO:0009792,GO:0009888,GO:0009889,GO:0009890,GO:0009892,GO:0009987,GO:0009992,GO:0010008,GO:0010324,GO:0010556,GO:0010558,GO:0010605,GO:0010720,GO:0010975,GO:0010976,GO:0012505,GO:0012506,GO:0012510,GO:0015031,GO:0015833,GO:0016020,GO:0016032,GO:0016043,GO:0016055,GO:0016192,GO:0016323,GO:0016324,GO:0016482,GO:0019222,GO:0019538,GO:0019725,GO:0019882,GO:0019884,GO:0019886,GO:0019899,GO:0019900,GO:0019901,GO:0019904,GO:0019953,GO:0022008,GO:0022402,GO:0022412,GO:0022414,GO:0022603,GO:0022607,GO:0023052,GO:0030100,GO:0030104,GO:0030117,GO:0030118,GO:0030119,GO:0030120,GO:0030122,GO:0030125,GO:0030128,GO:0030130,GO:0030131,GO:0030132,GO:0030133,GO:0030135,GO:0030136,GO:0030139,GO:0030140,GO:0030141,GO:0030154,GO:0030163,GO:0030175,GO:0030276,GO:0030658,GO:0030659,GO:0030660,GO:0030662,GO:0030665,GO:0030666,GO:0030667,GO:0030669,GO:0030674,GO:0030707,GO:0030855,GO:0031090,GO:0031323,GO:0031324,GO:0031326,GO:0031327,GO:0031344,GO:0031346,GO:0031410,GO:0031982,GO:0032153,GO:0032433,GO:0032501,GO:0032502,GO:0032504,GO:0032506,GO:0032535,GO:0032794,GO:0032799,GO:0032801,GO:0032802,GO:0032879,GO:0032881,GO:0032885,GO:0032940,GO:0032991,GO:0033036,GO:0034381,GO:0034383,GO:0034613,GO:0034622,GO:0035091,GO:0035567,GO:0035615,GO:0036019,GO:0036020,GO:0036062,GO:0036090,GO:0036230,GO:0036465,GO:0038024,GO:0042119,GO:0042592,GO:0042734,GO:0042886,GO:0042995,GO:0043112,GO:0043167,GO:0043168,GO:0043170,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043255,GO:0043299,GO:0043312,GO:0043933,GO:0044085,GO:0044237,GO:0044238,GO:0044248,GO:0044257,GO:0044260,GO:0044265,GO:0044267,GO:0044403,GO:0044419,GO:0044422,GO:0044424,GO:0044425,GO:0044431,GO:0044433,GO:0044437,GO:0044440,GO:0044444,GO:0044446,GO:0044448,GO:0044456,GO:0044459,GO:0044463,GO:0044464,GO:0044703,GO:0044877,GO:0045055,GO:0045177,GO:0045184,GO:0045202,GO:0045321,GO:0045334,GO:0045595,GO:0045597,GO:0045664,GO:0045666,GO:0045807,GO:0045912,GO:0046903,GO:0046907,GO:0048002,GO:0048013,GO:0048193,GO:0048259,GO:0048260,GO:0048268,GO:0048468,GO:0048475,GO:0048477,GO:0048488,GO:0048489,GO:0048518,GO:0048519,GO:0048522,GO:0048523,GO:0048609,GO:0048699,GO:0048731,GO:0048856,GO:0048869,GO:0048878,GO:0050690,GO:0050750,GO:0050767,GO:0050769,GO:0050789,GO:0050793,GO:0050794,GO:0050896,GO:0051049,GO:0051050,GO:0051094,GO:0051128,GO:0051130,GO:0051171,GO:0051172,GO:0051179,GO:0051234,GO:0051239,GO:0051240,GO:0051285,GO:0051286,GO:0051301,GO:0051640,GO:0051641,GO:0051648,GO:0051649,GO:0051650,GO:0051656,GO:0051704,GO:0051716,GO:0051960,GO:0051962,GO:0055082,GO:0060071,GO:0060090,GO:0060255,GO:0060284,GO:0060429,GO:0060627,GO:0061024,GO:0061640,GO:0062012,GO:0062014,GO:0065003,GO:0065007,GO:0065008,GO:0070325,GO:0070382,GO:0070727,GO:0070820,GO:0071702,GO:0071704,GO:0071705,GO:0071840,GO:0071944,GO:0072583,GO:0080090,GO:0090066,GO:0090175,GO:0097006,GO:0097060,GO:0097458,GO:0097479,GO:0097480,GO:0097708,GO:0097718,GO:0098588,GO:0098590,GO:0098657,GO:0098748,GO:0098793,GO:0098796,GO:0098797,GO:0098805,GO:0098852,GO:0098858,GO:0099003,GO:0099024,GO:0099503,GO:0099504,GO:0099568,GO:0099738,GO:0101002,GO:0101003,GO:0120025,GO:0120035,GO:0120038,GO:0198738,GO:1900125,GO:1900126,GO:1901532,GO:1901564,GO:1901565,GO:1901575,GO:1902036,GO:1902410,GO:1903047,GO:1903706,GO:1905114,GO:1905330,GO:1990386,GO:2000026,GO:2000027,GO:2000736
EggNOG free text desc.intracellular protein transport
EggNOG OGsCOG4354@1,KOG1077@2759
Ec32 ortholog descriptionCoatomer protein complex, alpha sub-unit
Ec32 orthologEc-05_005870.2
COG Functional cat.G
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko04131,ko04147
Hectar predicted targeting categoryother localisation
Exons3
Model size297
Cds size297
Stop0
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig16329.4011.1prot_H-elongata_contig16329.4011.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig16329 4197..7325 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929955.9015214-CDS-H-elongata_contig16329:4196..42791622929955.9015214-CDS-H-elongata_contig16329:4196..4279Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig16329 4197..4279 +
1691679222.5559597-CDS-H-elongata_contig16329:4196..42791691679222.5559597-CDS-H-elongata_contig16329:4196..4279Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig16329 4197..4279 +
1622929955.9239738-CDS-H-elongata_contig16329:6344..64341622929955.9239738-CDS-H-elongata_contig16329:6344..6434Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig16329 6345..6434 +
1691679222.5690155-CDS-H-elongata_contig16329:6344..64341691679222.5690155-CDS-H-elongata_contig16329:6344..6434Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig16329 6345..6434 +
1622929955.9446464-CDS-H-elongata_contig16329:7201..73251622929955.9446464-CDS-H-elongata_contig16329:7201..7325Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig16329 7202..7325 +
1691679222.5774412-CDS-H-elongata_contig16329:7201..73251691679222.5774412-CDS-H-elongata_contig16329:7201..7325Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig16329 7202..7325 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig16329.4011.1

>prot_H-elongata_contig16329.4011.1 ID=prot_H-elongata_contig16329.4011.1|Name=mRNA_H-elongata_contig16329.4011.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=99bp
QQRVDKELANIRNKFSSSSGLSSYNRKKYVWKLVYMFMLGYEIDFGHMEM
ISLISSTRYSEKNVGYIAVSLLLRSGDHMMTLVINSIRNDLNSHSSPAQ
back to top

mRNA from alignment at H-elongata_contig16329:4197..7325+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig16329.4011.1 ID=mRNA_H-elongata_contig16329.4011.1|Name=mRNA_H-elongata_contig16329.4011.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=3129bp|location=Sequence derived from alignment at H-elongata_contig16329:4197..7325+ (Himanthalia elongata Himel1 dioecious)
CAGCAACGGGTGGACAAGGAGCTGGCCAATATCCGGAACAAGTTCAGCAG
TAGCTCAGGGCTCAGCAGCTACAACCGAAAAAAGTGAGAAGGGGCAGAGA
GACATTCGGTAAAATGTGCAACCCCGCCATCTCTCGCAGAAAGGAGAAAA
GAGGAGTACCATTAGAAATGACACGGCGTTTTTTTGTTGATATATGTATG
TATTTATATTATCACGTGTGCTTTGTAGGTGGTGATTACCAGGCCTACCC
CACCTTTGGTCCCAAGGGGATTTTTCTTTCTCTCTCTCCCCGCTTGGTTC
ACGCCTCCGTTTGTTGTTTTTTTTAATCGCGGTACAAGTTTATTTCAGCG
CTAACTACTCCTACACCTTGTCAACCAATGATTGAAGTTGGTTTACTCCC
CGTTTTCTTGCTTTGCGCTAGTATTATTATTAAAAAAACATATGAAGTAA
TTCCAACCCTCCGAGCATCCACGCCTTCTTAGCACTATGAGAGGTGTAAT
CCAGGGGATCAACTATCACCAGGTTCGAATGTGGACATTTTAACTACATC
TAAGTATATAATATGTAATTATTCATCATATAGGGATGTCAAACCAGAGT
ATAGAGTATAGGGAGTGAACTGTGTGTGGTGGTTACGAAGGGTTAGGCAT
ATCACTATACATATGTAGAGAGTGATGATGCATTACGGTTGATTTGAGGT
TGTAGGGGTATCATTATTTATATAGTATATAGTATGGAGACGTAAAGCCA
AAGCCTAGAGGGTGGACTGTGTGTGGTGGTTAGGGAGGGTGAAGTATTTT
CATCACTTCTTCATTACATGGTATATGGTATGGTAAATGGTATGGTAAAT
GGTTGTATATTCATATATCGAAATAAATTTCGGATCGTAGTTATTAGAAA
CGTGCTGTTAATAGGTCCTTTCTGGAGTCCGAGCCTAGATAGGGTAATCA
AACGAAGGGGAAGCAATTGTTTCGTCTAAGGAGAGAAACATACAGTAATG
ACAAATATCCATAGCGAGGCCGTTAGAGGGTCATAAACCCTACAATCAAC
CATTGTAGTATGCCGCCCGCGAGGTAAAGCGTGAGATACACAGCATTCTA
TCTCTCGGGAGTCCAGCACTATTACTACTATGGATCGAATATTTATATTA
ATATTTAGACTAGTTGTGCACAAACAAAAATCAACCGCCCTTGGTAGGAT
CGAAGTAACGGCTTCCGCACCTTGTCGTTTTTAGGCCGCTCGGGTGATAC
GGTGCTACCTCTTACATCACTACAGTATCTGTAACTAGTAATTAGTGTAG
TAATTAGGCTACGCAAGAGTATGATTCCCCATTAAAGCGAAAGTCGTTGG
AGGGTTGGGATTCCGAAACGCCCTCCCTGAAAGCAGAGCCGCACTCGGTT
CAACCATATGTGTGCGTGTGTGTGTTGTACTAGTAATAATATGGAATAGT
GGTTAGCACGATTTCGTGTACACCAGGCCGTGTGGGCGTTTGTGTATTTG
TGTTTGTTCATCTTTCTCTCTCTCTCTGTGTGTGTGTATGTTTGTCTTTC
AGTCATCGTGTGTATTTGGGCCCGTGTATTCTCAATTGGTGTATTATTGT
GTAGACATTAATGTGTGCCTGTGTGTATTATGTGTGTGGTTACCCTAGAC
GGCTCGCATACGGCTTCGTGGCCTGCAACGATCGCTCTCAGCTCCTCTGT
AATACAGAATAGCACGGTAGTACCTCCCGCTTGTGGTTTTCAGTGTCCGA
CTGTGGGTGCTTGAACGGGAACGCCTTCTTCAGCTACAGAACCTTTTGTT
TCGTCGTTGTCACTGTGTGGCAGGAGTGGTTTTTTATTAAGCTTTTCCCA
TTGCGTAGCGGGAAACGCTCGACAGAAGAAAAAGGTGGTACTGTCTGTTG
AAGAGTTGTTTGTTTGTTTGTTTTGTTTTTTTACGTTACACAAAAGTGGC
ATGATGAAATGACAAAGCATGAGATGGCATGTATCAAAGAGCGACGACCA
ATGCGCGTGGGATATATGTAATGAAGCATACATACTCTTCCAACGAATGT
GACCGCCTTCTAACGCCCCCCCCCCTATCACCCTACCACCCTATCTCTCT
CTCTCTCTGTCTTTTCTTTCCTTCATCGCGGTGTGTGACGTGGGGCAGGT
ACGTGTGGAAGCTGGTGTATATGTTCATGCTCGGCTACGAGATCGACTTC
GGGCATATGGAGATGATCAGTCTCATCAGTTCCACGAGGTACCACCGTTA
TTATTAGCATTCAGTAGGCGTTGATGGCAACACATAATTAGAGCGCAAAA
ATAGATTACACAAATATTAAAACACATCCCTTGAGATAATAAAACGGTCC
CCTGGACTACACCTCTCATGGTGCTAAGAAAGCGTGGATGTTCGAAGGGT
CTTAAATGAATTCATATGTTTTTTTTAATAAGCATAAAACATACGAAGAA
ATATATATAGAGAGAGAGATAGAGAAAAATATTAAATGTCAAATAGAAAA
GCAACAAAAATAGAAATGCCGCAACCAAGCTGTCAAGGCCTTTGGGGCGA
AAACCAAGCTTCAGCACCAAAAGCATGAAGTTGCTATATATATTACTCTC
GAGATATTTTGATGCTCGTTTCTCGCGTTTTGTATTGTTTATCGGGGGAT
GGGGGGAGAACGCACGGCACCAACGATGTTTTGTCGTGAAAGTTGCCTCG
GAGGGAGCGAGTGATAGACGTAAGTCTGTCCATAGTTTTGCGGGTTGTTT
CTCCCGCCCCCCCACCCCTCCTCATGCACGCCTGGCAAATAATCTGACAG
CTATTGATCGAACATGCAAAACACGAGTATGCCCCCTTAACCACCTTCCG
CCAAATACGGCATCAATACGGCGTCAATACGGTATCATGGAAATCTCGAG
AAGTCACTTGTTTCGTGTGCTACGCGTCATACACACACACATACCTCCTC
AACCCCCTGGCGTGGGCGGGTTGATTGTATACCGTTGGCCGCACGCGGCG
GCTAGGTATTCGGAAAAGAACGTTGGGTACATCGCCGTGAGCCTGCTGCT
GCGGTCAGGAGATCATATGATGACGCTCGTGATCAACTCTATCAGGAACG
ACCTCAACAGCCACTCCAGTCCGGCTCAG
back to top

Coding sequence (CDS) from alignment at H-elongata_contig16329:4197..7325+

>mRNA_H-elongata_contig16329.4011.1 ID=mRNA_H-elongata_contig16329.4011.1|Name=mRNA_H-elongata_contig16329.4011.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=594bp|location=Sequence derived from alignment at H-elongata_contig16329:4197..7325+ (Himanthalia elongata Himel1 dioecious)
CAGCAACGGGTGGACAAGGAGCTGGCCAATATCCGGAACAAGTTCAGCAG
TAGCTCAGGGCTCAGCAGCTACAACCGAAAAAACAGCAACGGGTGGACAA
GGAGCTGGCCAATATCCGGAACAAGTTCAGCAGTAGCTCAGGGCTCAGCA
GCTACAACCGAAAAAAGTACGTGTGGAAGCTGGTGTATATGTTCATGCTC
GGCTACGAGATCGACTTCGGGCATATGGAGATGATCAGTCTCATCAGTTC
CACGAGGTACGTGTGGAAGCTGGTGTATATGTTCATGCTCGGCTACGAGA
TCGACTTCGGGCATATGGAGATGATCAGTCTCATCAGTTCCACGAGGTAT
TCGGAAAAGAACGTTGGGTACATCGCCGTGAGCCTGCTGCTGCGGTCAGG
AGATCATATGATGACGCTCGTGATCAACTCTATCAGGAACGACCTCAACA
GCCACTCCAGTCCGGCTCAGGTATTCGGAAAAGAACGTTGGGTACATCGC
CGTGAGCCTGCTGCTGCGGTCAGGAGATCATATGATGACGCTCGTGATCA
ACTCTATCAGGAACGACCTCAACAGCCACTCCAGTCCGGCTCAG
back to top