mRNA_H-elongata_contig163215.4009.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig163215.4009.1
Unique NamemRNA_H-elongata_contig163215.4009.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
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BLAST of mRNA_H-elongata_contig163215.4009.1 vs. uniprot
Match: D8LM70_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LM70_ECTSI)

HSP 1 Score: 83.6 bits (205), Expect = 1.480e-17
Identity = 37/46 (80.43%), Postives = 40/46 (86.96%), Query Frame = 1 
Query:   16 QVAKRAGVKIPTACKTGICGTCTTDLEDPNAESYRPGFQVVRACVT 153
            +VAKR GVKI TAC +GICGTC TDLED N +SYRPGFQVVRACVT
Sbjct:   64 KVAKRCGVKIATACNSGICGTCMTDLEDANGKSYRPGFQVVRACVT 109
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BLAST of mRNA_H-elongata_contig163215.4009.1 vs. uniprot
Match: A0A835YHE6_9STRA (2Fe-2S ferredoxin-type domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YHE6_9STRA)

HSP 1 Score: 74.3 bits (181), Expect = 2.980e-14
Identity = 31/47 (65.96%), Postives = 40/47 (85.11%), Query Frame = 1 
Query:   19 VAKRAGVKIPTACKTGICGTCTTDLEDPN---AESYRPGFQVVRACV 150
            VA RAG+KI T+C++G+CGTCTTD+EDPN    ++YRPGFQ +RACV
Sbjct: 2230 VAARAGIKIATSCRSGLCGTCTTDMEDPNWPLNKTYRPGFQTIRACV 2276
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BLAST of mRNA_H-elongata_contig163215.4009.1 vs. uniprot
Match: A0A7S1BMG3_9STRA (Hypothetical protein (Fragment) n=1 Tax=Corethron hystrix TaxID=216773 RepID=A0A7S1BMG3_9STRA)

HSP 1 Score: 64.7 bits (156), Expect = 7.310e-11
Identity = 27/46 (58.70%), Postives = 35/46 (76.09%), Query Frame = 1 
Query:   13 LQVAKRAGVKIPTACKTGICGTCTTDLEDPNAESY-RPGFQVVRAC 147
            L+V    G+K+P AC+TG+CGTCT D++DP AE   RPG+ VVRAC
Sbjct:   33 LKVGDDHGIKVPRACRTGLCGTCTVDVKDPGAEGKERPGYSVVRAC 78
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BLAST of mRNA_H-elongata_contig163215.4009.1 vs. uniprot
Match: A0A7S1XP04_9STRA (Hypothetical protein n=2 Tax=Phaeomonas parva TaxID=124430 RepID=A0A7S1XP04_9STRA)

HSP 1 Score: 61.2 bits (147), Expect = 1.210e-9
Identity = 29/47 (61.70%), Postives = 30/47 (63.83%), Query Frame = 1 
Query:   13 LQVAKRAGVKIPTACKTGICGTCTTDLEDPNAESYRPGFQVVRACVT 153
            + V  R GVKIP  CKTGICGTCT DL DPN   Y    Q VRAC T
Sbjct:   56 MDVGDRVGVKIPRGCKTGICGTCTLDLIDPN---YEGTLQTVRACCT 99
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BLAST of mRNA_H-elongata_contig163215.4009.1 vs. uniprot
Match: A0A7S1TWY9_9STRA (Hypothetical protein (Fragment) n=2 Tax=Phaeomonas parva TaxID=124430 RepID=A0A7S1TWY9_9STRA)

HSP 1 Score: 61.2 bits (147), Expect = 1.220e-9
Identity = 29/47 (61.70%), Postives = 30/47 (63.83%), Query Frame = 1 
Query:   13 LQVAKRAGVKIPTACKTGICGTCTTDLEDPNAESYRPGFQVVRACVT 153
            + V  R GVKIP  CKTGICGTCT DL DPN   Y    Q VRAC T
Sbjct:   56 MDVGDRVGVKIPRGCKTGICGTCTLDLIDPN---YEGTLQTVRACCT 99
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BLAST of mRNA_H-elongata_contig163215.4009.1 vs. uniprot
Match: A0A7R9U3B9_9STRA (Hypothetical protein (Fragment) n=1 Tax=Pinguiococcus pyrenoidosus TaxID=172671 RepID=A0A7R9U3B9_9STRA)

HSP 1 Score: 59.7 bits (143), Expect = 4.250e-9
Identity = 28/47 (59.57%), Postives = 30/47 (63.83%), Query Frame = 1 
Query:   13 LQVAKRAGVKIPTACKTGICGTCTTDLEDPNAESYRPGFQVVRACVT 153
            + V    GVKIP  CKTG+CGTCT DL DPN E  R   Q VRAC T
Sbjct:   44 MDVGDAVGVKIPRGCKTGVCGTCTLDLLDPNFEGQR---QTVRACCT 87
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BLAST of mRNA_H-elongata_contig163215.4009.1 vs. uniprot
Match: W7TBD5_9STRA (2Fe-2S ferredoxin-type domain-containing protein n=1 Tax=Nannochloropsis gaditana TaxID=72520 RepID=W7TBD5_9STRA)

HSP 1 Score: 57.0 bits (136), Expect = 1.340e-8
Identity = 25/55 (45.45%), Postives = 34/55 (61.82%), Query Frame = 1 
Query:   13 LQVAKRAGVKIPTACKTGICGTCTTDLEDPN--------AESYRPGFQVVRACVT 153
            ++V  +AG+ IP AC TG+CGTCT+DL DP+            R G+Q +RAC T
Sbjct:  118 MKVGDKAGISIPRACCTGLCGTCTSDLRDPSYTFKGEDKPAGAREGYQTIRACST 172
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BLAST of mRNA_H-elongata_contig163215.4009.1 vs. uniprot
Match: A0A4D9CZD2_9STRA (2Fe-2S ferredoxin-type domain-containing protein n=1 Tax=Nannochloropsis salina CCMP1776 TaxID=1027361 RepID=A0A4D9CZD2_9STRA)

HSP 1 Score: 57.0 bits (136), Expect = 2.970e-8
Identity = 25/55 (45.45%), Postives = 34/55 (61.82%), Query Frame = 1 
Query:   13 LQVAKRAGVKIPTACKTGICGTCTTDLEDPN--------AESYRPGFQVVRACVT 153
            ++V  +AG+ IP AC TG+CGTCT+DL DP+            R G+Q +RAC T
Sbjct:  118 MKVGDKAGISIPRACCTGLCGTCTSDLRDPSYTFKGEDKPAGAREGYQTIRACST 172
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BLAST of mRNA_H-elongata_contig163215.4009.1 vs. uniprot
Match: A0A7S3A412_9RHOD (Hypothetical protein n=1 Tax=Rhodosorus marinus TaxID=101924 RepID=A0A7S3A412_9RHOD)

HSP 1 Score: 54.3 bits (129), Expect = 1.030e-7
Identity = 22/47 (46.81%), Postives = 30/47 (63.83%), Query Frame = 1 
Query:   13 LQVAKRAGVKIPTACKTGICGTCTTDLEDPNAESYRPGFQVVRACVT 153
            +++     +KIP  C+TG+CG CT DLEDP   S+  G Q +RAC T
Sbjct:    6 MKLGDSVDIKIPRGCRTGLCGACTVDLEDP---SFPDGIQTIRACQT 49
[Close]
BLAST of mRNA_H-elongata_contig163215.4009.1 vs. uniprot
Match: A0A7S3A5G6_9RHOD (Hypothetical protein (Fragment) n=1 Tax=Rhodosorus marinus TaxID=101924 RepID=A0A7S3A5G6_9RHOD)

HSP 1 Score: 54.3 bits (129), Expect = 2.050e-7
Identity = 22/47 (46.81%), Postives = 30/47 (63.83%), Query Frame = 1 
Query:   13 LQVAKRAGVKIPTACKTGICGTCTTDLEDPNAESYRPGFQVVRACVT 153
            +++     +KIP  C+TG+CG CT DLEDP   S+  G Q +RAC T
Sbjct:  129 MKLGDSVDIKIPRGCRTGLCGACTVDLEDP---SFPDGIQTIRACQT 172
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig163215.4009.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 17
Match NameE-valueIdentityDescription
D8LM70_ECTSI1.480e-1780.43Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A835YHE6_9STRA2.980e-1465.962Fe-2S ferredoxin-type domain-containing protein n... [more]
A0A7S1BMG3_9STRA7.310e-1158.70Hypothetical protein (Fragment) n=1 Tax=Corethron ... [more]
A0A7S1XP04_9STRA1.210e-961.70Hypothetical protein n=2 Tax=Phaeomonas parva TaxI... [more]
A0A7S1TWY9_9STRA1.220e-961.70Hypothetical protein (Fragment) n=2 Tax=Phaeomonas... [more]
A0A7R9U3B9_9STRA4.250e-959.57Hypothetical protein (Fragment) n=1 Tax=Pinguiococ... [more]
W7TBD5_9STRA1.340e-845.452Fe-2S ferredoxin-type domain-containing protein n... [more]
A0A4D9CZD2_9STRA2.970e-845.452Fe-2S ferredoxin-type domain-containing protein n... [more]
A0A7S3A412_9RHOD1.030e-746.81Hypothetical protein n=1 Tax=Rhodosorus marinus Ta... [more]
A0A7S3A5G6_9RHOD2.050e-746.81Hypothetical protein (Fragment) n=1 Tax=Rhodosorus... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig163215contigH-elongata_contig163215:315..467 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score82.8
Seed ortholog evalue5.1e-14
Seed eggNOG ortholog2880.D8LM70
EggNOG free text desc.2Fe-2S iron-sulfur cluster binding domain
EggNOG OGs2EYCC@1,2SZW3@2759
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Hectar predicted targeting categoryno signal peptide or anchor
Exons1
Model size153
Cds size153
Stop0
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929955.4890234-CDS-H-elongata_contig163215:314..4671622929955.4890234-CDS-H-elongata_contig163215:314..467Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig163215 315..467 +
1691679222.4434953-CDS-H-elongata_contig163215:314..4671691679222.4434953-CDS-H-elongata_contig163215:314..467Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig163215 315..467 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig163215.4009.1prot_H-elongata_contig163215.4009.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig163215 315..467 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig163215.4009.1

>prot_H-elongata_contig163215.4009.1 ID=prot_H-elongata_contig163215.4009.1|Name=mRNA_H-elongata_contig163215.4009.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=51bp
MSPSLQVAKRAGVKIPTACKTGICGTCTTDLEDPNAESYRPGFQVVRACV
T
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mRNA from alignment at H-elongata_contig163215:315..467+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig163215.4009.1 ID=mRNA_H-elongata_contig163215.4009.1|Name=mRNA_H-elongata_contig163215.4009.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=153bp|location=Sequence derived from alignment at H-elongata_contig163215:315..467+ (Himanthalia elongata Himel1 dioecious)
ATGTCCCCGTCACTTCAGGTGGCAAAGCGCGCCGGAGTGAAAATTCCCAC
GGCGTGCAAGACCGGCATTTGTGGCACCTGCACCACGGACCTGGAGGACC
CAAACGCCGAAAGCTACCGCCCGGGTTTCCAGGTGGTGAGGGCGTGTGTC
ACA
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Coding sequence (CDS) from alignment at H-elongata_contig163215:315..467+

>mRNA_H-elongata_contig163215.4009.1 ID=mRNA_H-elongata_contig163215.4009.1|Name=mRNA_H-elongata_contig163215.4009.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=306bp|location=Sequence derived from alignment at H-elongata_contig163215:315..467+ (Himanthalia elongata Himel1 dioecious)
ATGTCCCCGTCACTTCAGGTGGCAAAGCGCGCCGGAGTGAAAATTCCCAC
GGCGTGCAAGACCGGCATTTGTGGCACCTGCACCACGGACCTGGAGGACC
CAAACGCCGAAAGCTACCGCCCGGGTTTCCAGGTGGTGAGGGCGTGTGTC
ACAATGTCCCCGTCACTTCAGGTGGCAAAGCGCGCCGGAGTGAAAATTCC
CACGGCGTGCAAGACCGGCATTTGTGGCACCTGCACCACGGACCTGGAGG
ACCCAAACGCCGAAAGCTACCGCCCGGGTTTCCAGGTGGTGAGGGCGTGT
GTCACA
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