mRNA_H-elongata_contig162772.3981.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig162772.3981.1
Unique NamemRNA_H-elongata_contig162772.3981.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
[Close]
BLAST of mRNA_H-elongata_contig162772.3981.1 vs. uniprot
Match: A0A2I4B9J8_9TELE (ciliogenesis-associated TTC17-interacting protein n=1 Tax=Austrofundulus limnaeus TaxID=52670 RepID=A0A2I4B9J8_9TELE)

HSP 1 Score: 50.8 bits (120), Expect = 5.390e-6
Identity = 22/44 (50.00%), Postives = 34/44 (77.27%), Query Frame = 1 
Query:   19 ESIRADQASYLKEHPEVSSMMNAFTRAVVEHKPANVFVFARDYF 150
            E ++AD ASYLKEHPEV ++++ F + ++  KP ++F FAR+YF
Sbjct:  286 EELKADHASYLKEHPEVRALLSDFMQFLLLRKPDDIFQFAREYF 329
[Close]
BLAST of mRNA_H-elongata_contig162772.3981.1 vs. uniprot
Match: A0A1A7WN50_9TELE (Chromosome 2 open reading frame 62 n=2 Tax=Iconisemion striatum TaxID=60296 RepID=A0A1A7WN50_9TELE)

HSP 1 Score: 50.4 bits (119), Expect = 7.360e-6
Identity = 21/44 (47.73%), Postives = 34/44 (77.27%), Query Frame = 1 
Query:   19 ESIRADQASYLKEHPEVSSMMNAFTRAVVEHKPANVFVFARDYF 150
            E ++AD ASYL++HPE+ ++++ F  +++  KP NVF FAR+YF
Sbjct:  285 EELKADHASYLRQHPEIRALLSDFLLSLLLRKPDNVFQFAREYF 328
[Close]
BLAST of mRNA_H-elongata_contig162772.3981.1 vs. uniprot
Match: A0A4W5JUP1_9TELE (Ciliogenesis associated TTC17 interacting protein n=24 Tax=Salmonidae TaxID=8015 RepID=A0A4W5JUP1_9TELE)

HSP 1 Score: 50.1 bits (118), Expect = 1.010e-5
Identity = 22/44 (50.00%), Postives = 34/44 (77.27%), Query Frame = 1 
Query:   19 ESIRADQASYLKEHPEVSSMMNAFTRAVVEHKPANVFVFARDYF 150
            E ++A+ ASYL++HPE+ +MM  F + ++  KP +VFVFAR+YF
Sbjct:  290 EELKAEHASYLRQHPELRTMMADFLQFLLLRKPRDVFVFAREYF 333
[Close]
BLAST of mRNA_H-elongata_contig162772.3981.1 vs. uniprot
Match: UPI001E8CE022 (ciliogenesis-associated TTC17-interacting protein isoform X1 n=3 Tax=Micropterus TaxID=27705 RepID=UPI001E8CE022)

HSP 1 Score: 49.7 bits (117), Expect = 1.390e-5
Identity = 21/44 (47.73%), Postives = 34/44 (77.27%), Query Frame = 1 
Query:   19 ESIRADQASYLKEHPEVSSMMNAFTRAVVEHKPANVFVFARDYF 150
            E ++AD ASYL++HPE+ ++++ F + ++  KP +VF FARDYF
Sbjct:  297 EELKADHASYLRQHPEIRALISDFLQFLLLRKPDDVFQFARDYF 340
[Close]
BLAST of mRNA_H-elongata_contig162772.3981.1 vs. uniprot
Match: A0A4Z2G567_9TELE (Ciliogenesis-associated TTC17-interacting protein n=1 Tax=Liparis tanakae TaxID=230148 RepID=A0A4Z2G567_9TELE)

HSP 1 Score: 49.3 bits (116), Expect = 1.870e-5
Identity = 21/45 (46.67%), Postives = 34/45 (75.56%), Query Frame = 1 
Query:   16 QESIRADQASYLKEHPEVSSMMNAFTRAVVEHKPANVFVFARDYF 150
            QE ++AD A YL++HPE+ ++M+ F + ++  KP +VF FAR+YF
Sbjct:  250 QEELKADNALYLRQHPEIRALMSDFLQFLLLRKPEDVFQFAREYF 294
[Close]
BLAST of mRNA_H-elongata_contig162772.3981.1 vs. uniprot
Match: A0A6I9NFI0_9TELE (ciliogenesis-associated TTC17-interacting protein n=4 Tax=Notothenioidei TaxID=8205 RepID=A0A6I9NFI0_9TELE)

HSP 1 Score: 49.3 bits (116), Expect = 1.900e-5
Identity = 20/44 (45.45%), Postives = 34/44 (77.27%), Query Frame = 1 
Query:   19 ESIRADQASYLKEHPEVSSMMNAFTRAVVEHKPANVFVFARDYF 150
            E ++AD ASYL++HPE+ ++++ F + ++  KP ++F FARDYF
Sbjct:  292 EELKADHASYLRQHPEIRALISDFLQFLLLRKPDDIFQFARDYF 335
[Close]
BLAST of mRNA_H-elongata_contig162772.3981.1 vs. uniprot
Match: UPI001C40E509 (ciliogenesis-associated TTC17-interacting protein n=1 Tax=Solea senegalensis TaxID=28829 RepID=UPI001C40E509)

HSP 1 Score: 49.3 bits (116), Expect = 1.900e-5
Identity = 22/44 (50.00%), Postives = 34/44 (77.27%), Query Frame = 1 
Query:   19 ESIRADQASYLKEHPEVSSMMNAFTRAVVEHKPANVFVFARDYF 150
            E ++AD ASYL++HPEV ++++ F + ++  KP +VF FARDYF
Sbjct:  299 EELKADNASYLRKHPEVRALISDFLQFLLLRKPDDVFRFARDYF 342
[Close]
BLAST of mRNA_H-elongata_contig162772.3981.1 vs. uniprot
Match: A0A7J5ZBR3_DISMA (Uncharacterized protein n=1 Tax=Dissostichus mawsoni TaxID=36200 RepID=A0A7J5ZBR3_DISMA)

HSP 1 Score: 49.3 bits (116), Expect = 1.920e-5
Identity = 20/44 (45.45%), Postives = 34/44 (77.27%), Query Frame = 1 
Query:   19 ESIRADQASYLKEHPEVSSMMNAFTRAVVEHKPANVFVFARDYF 150
            E ++AD ASYL++HPE+ ++++ F + ++  KP ++F FARDYF
Sbjct:  549 EELKADHASYLRQHPEIRALISDFLQFLLLRKPDDIFQFARDYF 592
[Close]
BLAST of mRNA_H-elongata_contig162772.3981.1 vs. uniprot
Match: UPI001C4CB8FA (LOW QUALITY PROTEIN: ciliogenesis-associated TTC17-interacting protein n=1 Tax=Plectropomus leopardus TaxID=160734 RepID=UPI001C4CB8FA)

HSP 1 Score: 48.5 bits (114), Expect = 3.560e-5
Identity = 20/44 (45.45%), Postives = 34/44 (77.27%), Query Frame = 1 
Query:   19 ESIRADQASYLKEHPEVSSMMNAFTRAVVEHKPANVFVFARDYF 150
            E ++AD ASYL++HPEV ++++ F + ++  KP ++F FAR+YF
Sbjct:  293 EELKADHASYLRQHPEVRALVSDFLQFLLLRKPEDIFQFAREYF 336
[Close]
BLAST of mRNA_H-elongata_contig162772.3981.1 vs. uniprot
Match: A0A4W6CCE0_LATCA (Ciliogenesis associated TTC17 interacting protein n=3 Tax=Lates calcarifer TaxID=8187 RepID=A0A4W6CCE0_LATCA)

HSP 1 Score: 48.5 bits (114), Expect = 3.560e-5
Identity = 20/44 (45.45%), Postives = 35/44 (79.55%), Query Frame = 1 
Query:   19 ESIRADQASYLKEHPEVSSMMNAFTRAVVEHKPANVFVFARDYF 150
            E ++AD ASYL++HPE+ ++++ F + ++ +KP +VF FAR+YF
Sbjct:  296 EELKADHASYLRQHPEIRALISDFLQFLLLNKPDDVFQFAREYF 339
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig162772.3981.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 19
Match NameE-valueIdentityDescription
A0A2I4B9J8_9TELE5.390e-650.00ciliogenesis-associated TTC17-interacting protein ... [more]
A0A1A7WN50_9TELE7.360e-647.73Chromosome 2 open reading frame 62 n=2 Tax=Iconise... [more]
A0A4W5JUP1_9TELE1.010e-550.00Ciliogenesis associated TTC17 interacting protein ... [more]
UPI001E8CE0221.390e-547.73ciliogenesis-associated TTC17-interacting protein ... [more]
A0A4Z2G567_9TELE1.870e-546.67Ciliogenesis-associated TTC17-interacting protein ... [more]
A0A6I9NFI0_9TELE1.900e-545.45ciliogenesis-associated TTC17-interacting protein ... [more]
UPI001C40E5091.900e-550.00ciliogenesis-associated TTC17-interacting protein ... [more]
A0A7J5ZBR3_DISMA1.920e-545.45Uncharacterized protein n=1 Tax=Dissostichus mawso... [more]
UPI001C4CB8FA3.560e-545.45LOW QUALITY PROTEIN: ciliogenesis-associated TTC17... [more]
A0A4W6CCE0_LATCA3.560e-545.45Ciliogenesis associated TTC17 interacting protein ... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig162772contigH-elongata_contig162772:693..842 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score62.8
Seed ortholog evalue5.3e-08
Seed eggNOG ortholog2880.D8LD32
Preferred nameGUK1
KEGG rclassRC00002,RC00649
KEGG koko:K00942,ko:K11151,ko:K15538
KEGG ReactionR00332,R02090,R03048,R08379,R08380
KEGG Pathwayko00230,ko00830,ko01100,map00230,map00830,map01100
KEGG ModuleM00050
GOsGO:0003674,GO:0003824,GO:0004385,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005737,GO:0005829,GO:0006139,GO:0006163,GO:0006164,GO:0006183,GO:0006185,GO:0006725,GO:0006753,GO:0006793,GO:0006796,GO:0006807,GO:0006810,GO:0007275,GO:0008104,GO:0008150,GO:0008152,GO:0009058,GO:0009116,GO:0009117,GO:0009119,GO:0009123,GO:0009126,GO:0009132,GO:0009133,GO:0009135,GO:0009136,GO:0009141,GO:0009142,GO:0009144,GO:0009145,GO:0009150,GO:0009151,GO:0009152,GO:0009153,GO:0009161,GO:0009162,GO:0009163,GO:0009165,GO:0009167,GO:0009170,GO:0009179,GO:0009180,GO:0009182,GO:0009183,GO:0009185,GO:0009186,GO:0009188,GO:0009189,GO:0009199,GO:0009200,GO:0009201,GO:0009205,GO:0009206,GO:0009215,GO:0009225,GO:0009259,GO:0009260,GO:0009262,GO:0009263,GO:0009265,GO:0009394,GO:0009987,GO:0015031,GO:0015833,GO:0015949,GO:0016301,GO:0016310,GO:0016740,GO:0016772,GO:0016776,GO:0017144,GO:0018130,GO:0019205,GO:0019438,GO:0019637,GO:0019673,GO:0019692,GO:0019693,GO:0032501,GO:0032502,GO:0033036,GO:0034404,GO:0034436,GO:0034641,GO:0034654,GO:0040008,GO:0042278,GO:0042451,GO:0042455,GO:0042886,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0044237,GO:0044238,GO:0044249,GO:0044271,GO:0044281,GO:0044283,GO:0044424,GO:0044444,GO:0044464,GO:0045184,GO:0046034,GO:0046037,GO:0046039,GO:0046054,GO:0046060,GO:0046066,GO:0046128,GO:0046129,GO:0046385,GO:0046390,GO:0046483,GO:0046710,GO:0046711,GO:0046939,GO:0046940,GO:0048229,GO:0048638,GO:0048856,GO:0050145,GO:0050789,GO:0050793,GO:0051179,GO:0051234,GO:0055086,GO:0065007,GO:0071702,GO:0071704,GO:0071705,GO:0072521,GO:0072522,GO:0090407,GO:1901068,GO:1901070,GO:1901135,GO:1901137,GO:1901264,GO:1901293,GO:1901360,GO:1901362,GO:1901564,GO:1901566,GO:1901576,GO:1901657,GO:1901659
EggNOG free text desc.guanylate kinase activity
EggNOG OGsCOG0194@1,KOG0707@2759
Ec32 ortholog descriptionGuanylate kinase (IC)
Ec32 orthologEc-14_001590.1
EC2.7.4.8,3.2.1.130
COG Functional cat.F
CAZyGH99
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00002,ko01000
Hectar predicted targeting categoryno signal peptide or anchor
Exons1
Model size150
Cds size150
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929952.1293187-CDS-H-elongata_contig162772:692..8421622929952.1293187-CDS-H-elongata_contig162772:692..842Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig162772 693..842 -
1691679220.9112306-CDS-H-elongata_contig162772:692..8421691679220.9112306-CDS-H-elongata_contig162772:692..842Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig162772 693..842 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig162772.3981.1prot_H-elongata_contig162772.3981.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig162772 693..842 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig162772.3981.1

>prot_H-elongata_contig162772.3981.1 ID=prot_H-elongata_contig162772.3981.1|Name=mRNA_H-elongata_contig162772.3981.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=50bp
LIRSAQESIRADQASYLKEHPEVSSMMNAFTRAVVEHKPANVFVFARDYF
back to top

mRNA from alignment at H-elongata_contig162772:693..842-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig162772.3981.1 ID=mRNA_H-elongata_contig162772.3981.1|Name=mRNA_H-elongata_contig162772.3981.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=150bp|location=Sequence derived from alignment at H-elongata_contig162772:693..842- (Himanthalia elongata Himel1 dioecious)
TTGATTCGAAGCGCTCAGGAAAGTATCAGAGCCGACCAAGCGAGCTATCT
CAAGGAGCACCCGGAGGTGTCATCCATGATGAACGCTTTCACTCGCGCTG
TGGTGGAACACAAGCCTGCCAACGTATTTGTATTTGCTCGAGACTACTTC
back to top

Coding sequence (CDS) from alignment at H-elongata_contig162772:693..842-

>mRNA_H-elongata_contig162772.3981.1 ID=mRNA_H-elongata_contig162772.3981.1|Name=mRNA_H-elongata_contig162772.3981.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=300bp|location=Sequence derived from alignment at H-elongata_contig162772:693..842- (Himanthalia elongata Himel1 dioecious)
TTGATTCGAAGCGCTCAGGAAAGTATCAGAGCCGACCAAGCGAGCTATCT
CAAGGAGCACCCGGAGGTGTCATCCATGATGAACGCTTTCACTCGCGCTG
TGGTGGAACACAAGCCTGCCAACGTATTTGTATTTGCTCGAGACTACTTC
TTGATTCGAAGCGCTCAGGAAAGTATCAGAGCCGACCAAGCGAGCTATCT
CAAGGAGCACCCGGAGGTGTCATCCATGATGAACGCTTTCACTCGCGCTG
TGGTGGAACACAAGCCTGCCAACGTATTTGTATTTGCTCGAGACTACTTC
back to top