mRNA_H-elongata_contig162181.3955.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig162181.3955.1
Unique NamemRNA_H-elongata_contig162181.3955.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
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BLAST of mRNA_H-elongata_contig162181.3955.1 vs. uniprot
Match: UPI001F045B79 (transient receptor potential cation channel subfamily A member 1 homolog isoform X1 n=1 Tax=Xenia sp. Carnegie-2017 TaxID=2897299 RepID=UPI001F045B79)

HSP 1 Score: 52.0 bits (123), Expect = 2.560e-6
Identity = 22/47 (46.81%), Postives = 33/47 (70.21%), Query Frame = 1 
Query:   22 LDESDEQDGTPLHYAAKKGFVRLAKMLLGAGATVDVLNVKNMTPLHL 162
            L+ES++   TPLH AAKKGF+ + ++LL  GA ++  N++  T LHL
Sbjct:  476 LEESNKYGNTPLHIAAKKGFINVVRLLLSNGAVINAFNLEERTALHL 522
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BLAST of mRNA_H-elongata_contig162181.3955.1 vs. uniprot
Match: A0A179FAK8_METCM (SesB protein n=1 Tax=Pochonia chlamydosporia 170 TaxID=1380566 RepID=A0A179FAK8_METCM)

HSP 1 Score: 48.5 bits (114), Expect = 4.310e-5
Identity = 23/44 (52.27%), Postives = 29/44 (65.91%), Query Frame = 1 
Query:   28 ESDEQDGTPLHYAAKKGFVRLAKMLLGAGATVDVLNVKNMTPLH 159
            + D++  TPLH AA+ GF+ + K LL AGA VD  N  N TPLH
Sbjct: 1503 KQDDKGRTPLHEAARAGFLDVVKTLLSAGAEVDAPNHSNNTPLH 1546
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig162181.3955.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
UPI001F045B792.560e-646.81transient receptor potential cation channel subfam... [more]
A0A179FAK8_METCM4.310e-552.27SesB protein n=1 Tax=Pochonia chlamydosporia 170 T... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig162181contigH-elongata_contig162181:938..1099 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryno signal peptide or anchor
Exons1
Model size162
Cds size162
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929949.891667-CDS-H-elongata_contig162181:937..10991622929949.891667-CDS-H-elongata_contig162181:937..1099Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig162181 938..1099 -
1691679220.0298505-CDS-H-elongata_contig162181:937..10991691679220.0298505-CDS-H-elongata_contig162181:937..1099Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig162181 938..1099 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig162181.3955.1prot_H-elongata_contig162181.3955.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig162181 938..1099 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig162181.3955.1

>prot_H-elongata_contig162181.3955.1 ID=prot_H-elongata_contig162181.3955.1|Name=mRNA_H-elongata_contig162181.3955.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=54bp
TVILQVALDESDEQDGTPLHYAAKKGFVRLAKMLLGAGATVDVLNVKNMT
PLHL
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mRNA from alignment at H-elongata_contig162181:938..1099-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig162181.3955.1 ID=mRNA_H-elongata_contig162181.3955.1|Name=mRNA_H-elongata_contig162181.3955.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=162bp|location=Sequence derived from alignment at H-elongata_contig162181:938..1099- (Himanthalia elongata Himel1 dioecious)
ACGGTAATACTGCAGGTTGCGCTCGACGAAAGCGACGAGCAGGATGGCAC
CCCTCTGCACTACGCAGCCAAGAAAGGTTTTGTGCGACTCGCAAAGATGC
TGCTGGGAGCGGGAGCAACCGTGGACGTTCTGAACGTGAAGAACATGACC
CCCCTCCACTTG
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Coding sequence (CDS) from alignment at H-elongata_contig162181:938..1099-

>mRNA_H-elongata_contig162181.3955.1 ID=mRNA_H-elongata_contig162181.3955.1|Name=mRNA_H-elongata_contig162181.3955.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=324bp|location=Sequence derived from alignment at H-elongata_contig162181:938..1099- (Himanthalia elongata Himel1 dioecious)
ACGGTAATACTGCAGGTTGCGCTCGACGAAAGCGACGAGCAGGATGGCAC
CCCTCTGCACTACGCAGCCAAGAAAGGTTTTGTGCGACTCGCAAAGATGC
TGCTGGGAGCGGGAGCAACCGTGGACGTTCTGAACGTGAAGAACATGACC
CCCCTCCACTTGACGGTAATACTGCAGGTTGCGCTCGACGAAAGCGACGA
GCAGGATGGCACCCCTCTGCACTACGCAGCCAAGAAAGGTTTTGTGCGAC
TCGCAAAGATGCTGCTGGGAGCGGGAGCAACCGTGGACGTTCTGAACGTG
AAGAACATGACCCCCCTCCACTTG
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