mRNA_H-elongata_contig16078.3894.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig16078.3894.1
Unique NamemRNA_H-elongata_contig16078.3894.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
[Close]
BLAST of mRNA_H-elongata_contig16078.3894.1 vs. uniprot
Match: D7FPC4_ECTSI (Ubiquitin activating enzyme E1 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FPC4_ECTSI)

HSP 1 Score: 219 bits (559), Expect = 3.430e-62
Identity = 130/228 (57.02%), Postives = 149/228 (65.35%), Query Frame = 1 
Query:    1 DSALELLRQHPLGSTDEEGDSFWVGVRKPPTPLKLDSSNALHREFVWWAAVLRAGGYGIDIPRCERPRSASIPTASTGGGASRQLEIVSRGKGAGHRRGKWDTRSEESRNARRSHPSKLKCRQRRIRGVVGVLHPTRRPVVR--ESDPDEDIEPLIELELKRLRE-ADDDLNGHVDFVTAASNLRALGYGIPAADRLSTKRIAGKIVPAIATTTAVVSGLSCLELLKV 675
            DSA ELL+QHPLGSTD+EGD FW GVR+PP+PLKLDS+N LHREFVWWA+VLRAG YG+++PR  R   A +  A+                                             R++  R   G  H   RP+ +  ESDPDE IEPLI  EL  LRE ADDDLNGHVDF+TAASNLRA  YGIPAADRLSTKRIAGKIVPAIATTTAVVSGL+C+ELLK+
Sbjct:  300 DSAEELLKQHPLGSTDDEGDPFWTGVRRPPSPLKLDSANLLHREFVWWASVLRAGVYGVEVPRSVRDLQAPV-AATAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXREQSPR--EGRRH---RPLAKATESDPDETIEPLIRSELAGLRETADDDLNGHVDFITAASNLRASNYGIPAADRLSTKRIAGKIVPAIATTTAVVSGLACVELLKL 521
[Close]
BLAST of mRNA_H-elongata_contig16078.3894.1 vs. uniprot
Match: A0A7S4D0L7_9EUGL (Hypothetical protein n=1 Tax=Eutreptiella gymnastica TaxID=73025 RepID=A0A7S4D0L7_9EUGL)

HSP 1 Score: 129 bits (324), Expect = 1.280e-30
Identity = 84/235 (35.74%), Postives = 121/235 (51.49%), Query Frame = 1 
Query:   13 ELLRQHPLGSTDEEGDSFWVGVRKPPTPLKLDSSNALHREFVWWAAVLRAGGYGIDIPRCERPRSASIPTASTGGGASRQLEIVSRGKGAGHRRGKWDTRSE-------ESRNARRSHPSKLKCRQRRIRGVVGVLHPTRRPVVRESDPDEDIEPLIELELKRLREADDDLNGHVDFVTAASNLRALGYGIPAADRLSTKRIAGKIVPAIATTTAVVSGLSCLELLKVQHSRCLD 696
            +LL  HPL    ++G  FW G +KPP PL+ D+++  H EFV WA VL A  Y + +P   + R A+IP          +   V      G      DT+ E       E + + RS     +  QR    + G L          +   E    L E+E ++    DD  NGH+DF+TAASNLRA  YGIP AD++ TKRI+G+I+PA+ TTTA+++G  CL+L K+   + + 
Sbjct:  681 QLLHIHPLDKLGDDGKLFWSGSKKPPKPLQFDTADPGHMEFVLWATVLFASVYQLPVPDLAQVRDAAIPILQKFQPEPFKPRDVFIPASEG------DTKKEAPPPGEVEMKESPRSDEQLQQLAQREAE-IQGFL----------AQKGESACALSEIEFEK----DDPSNGHIDFITAASNLRARNYGIPEADKMHTKRISGRIIPAMITTTALITGFVCLQLYKLAMKKSMQ 894
[Close]
BLAST of mRNA_H-elongata_contig16078.3894.1 vs. uniprot
Match: W7UBG5_9STRA (Ubiquitin-activating enzyme e1 n=1 Tax=Nannochloropsis gaditana TaxID=72520 RepID=W7UBG5_9STRA)

HSP 1 Score: 120 bits (301), Expect = 1.550e-27
Identity = 80/227 (35.24%), Postives = 118/227 (51.98%), Query Frame = 1 
Query:   16 LLRQHPLGSTDEEGDSFWVGVRKPPTPLKLDSSNALHREFVWWAAVLRAGGYGIDIPRCERPRSASIPTASTGGGASRQLEIVSRGKGAGHRRGKWDTRSEESRNARRSHPSKLKCRQRRIRGVVGVLHPTRRPVVRESDPDEDIEPLIELELKRLREADDDLNGHVDFVTAASNLRALGYGIPAADRLSTKRIAGKIVPAIATTTAVVSGLSCLELLKVQHSRCLD 696
            LLR+HP  S  E+G+ FW G R+ PTP+  D S+ LH +F+  AA+L+A  + +             PT +  G +      +     +G++      R+EE         +K++     +R  +      +R   R  D  +  E         + E D D NGH+ F+T+ASNLRA  YG+  ADRL TK+IAG+I+PAIATTTAVV+GL+ LEL K+     L+
Sbjct:  821 LLREHPRDSVTEDGEPFWSGDRRIPTPIVFDQSDPLHMDFLLSAALLKARVFNV-----------VDPTTTVEGMSETVQATLDEILASGYQAPTEVVRAEEEEEG--DLEAKVQREFEEVRLTI------KRIAKRGGDNGKGTECTAARTRPEMFEKDQDWNGHIAFITSASNLRAANYGLARADRLQTKKIAGRIIPAIATTTAVVAGLASLELCKLAQRSLLE 1028
[Close]
BLAST of mRNA_H-elongata_contig16078.3894.1 vs. uniprot
Match: UPI001EAEDD84 (ubiquitin-like modifier-activating enzyme 6 n=1 Tax=Oncorhynchus gorbuscha TaxID=8017 RepID=UPI001EAEDD84)

HSP 1 Score: 116 bits (290), Expect = 1.870e-27
Identity = 85/223 (38.12%), Postives = 116/223 (52.02%), Query Frame = 1 
Query:    7 ALELLRQHPLGSTDEEGDSFWVGVRKPPTPLKLDSSNALHREFVWWAAVLRAGGYGIDIPRCERPRSASIPTASTGGGASRQLEIVSRGKGAGHRRGKWDTRSEESRNARRSHPSKLKCRQRRIRGVVGVLHPTRRPVVRESDPDEDIEPLIELELKRLREADDDLNGHVDFVTAASNLRALGYGIPAADRLSTKRIAGKIVPAIATTTAVVSGLSCLELLKV 675
            AL+LL   PL +  ++G  FW   ++PP+P++ D  ++LH  FV  AA L A  Y  +IP  E+  S            SR L  ++  +   +R    + R E   N ++    KL       R  +  L         E+   + + P       R+ E DDDLNGH+DFV +AS+LRA  Y I  ADRL TKRIAGKI+PAIAT TA V+GL  LEL+KV
Sbjct:   58 ALQLLHSFPLDTRLKDGSLFWQSPKRPPSPIEFDLKDSLHFSFVVSAARLYAEIY--NIPYSEKDLSQEA--------VSRMLSEITVPE---YRPA--EKRIETDENVKKPDQMKLSVSSEEEREAIAQLE--------EAITADHVTPERLRMSPRMFEKDDDLNGHMDFVASASSLRARMYSIEVADRLKTKRIAGKIIPAIATATAAVAGLVSLELVKV 257
[Close]
BLAST of mRNA_H-elongata_contig16078.3894.1 vs. uniprot
Match: A0A4D9D8Q8_9STRA (UBA_e1_C domain-containing protein n=1 Tax=Nannochloropsis salina CCMP1776 TaxID=1027361 RepID=A0A4D9D8Q8_9STRA)

HSP 1 Score: 120 bits (300), Expect = 2.210e-27
Identity = 80/229 (34.93%), Postives = 119/229 (51.97%), Query Frame = 1 
Query:   10 LELLRQHPLGSTDEEGDSFWVGVRKPPTPLKLDSSNALHREFVWWAAVLRAGGYGIDIPRCERPRSASIPTASTGGGASRQLEIVSRGKGAGHRRGKWDTRSEESRNARRSHPSKLKCRQRRIRGVVGVLHPTRRPVVRESDPDEDIEPLIELELKRLREADDDLNGHVDFVTAASNLRALGYGIPAADRLSTKRIAGKIVPAIATTTAVVSGLSCLELLKVQHSRCLD 696
            + LLR+HP  S  E+G+ FW G R+ PTP+  D S+ LH +F+  AA+L+A  + +             PT +  G +      +     +G++      R+EE         +K++     +R  +      +R   R  D  +  E         + E D D NGH+ F+T+ASNLRA  YG+  ADRL TK+IAG+I+PAIATTTAVV+GL+ LEL K+     L+
Sbjct:  789 VALLREHPRDSVTEDGEPFWSGDRRIPTPIVFDRSDPLHMDFLLSAALLKARVFNV-----------VDPTTTVEGMSETVQATLDEILASGYQPPTEVVRAEEEEEG--DLEAKVQREFEEVRLTI------KRIAKRGGDNGKGTECAAARTRPEMFEKDQDWNGHIAFITSASNLRAANYGLARADRLQTKKIAGRIIPAIATTTAVVAGLASLELCKLAQRSLLE 998
[Close]
BLAST of mRNA_H-elongata_contig16078.3894.1 vs. uniprot
Match: UPI00145BC75E (LOW QUALITY PROTEIN: ubiquitin-like modifier-activating enzyme 6 n=8 Tax=Acipenseroidei TaxID=186622 RepID=UPI00145BC75E)

HSP 1 Score: 119 bits (298), Expect = 3.760e-27
Identity = 87/224 (38.84%), Postives = 116/224 (51.79%), Query Frame = 1 
Query:    7 ALELLRQHPLGSTDEEGDSFWVGVRKPPTPLKLDSSNALHREFVWWAAVLRAGGYGIDIPRCERPRSASIPTASTGGGASRQLEIVSRGKGAGHRRGKWDTRSEESRNARRSHPSKLKCRQRRIRGVVGVLHPTRRPVVRESDPDEDIEPLIELELKRLR-EADDDLNGHVDFVTAASNLRALGYGIPAADRLSTKRIAGKIVPAIATTTAVVSGLSCLELLKV 675
            A++LL   PL +  ++G  FW   ++PP+P+  D ++ALH  F+  AA L A  Y I        +  S  T            IVS  K   ++  +    ++ES  AR+   +KL       R  +G L           D          L++  +  E DDD NGH+DF+TAASNLRA  Y I AADRL TKRIAGKI+PAIAT+TA VSGL  LEL+KV
Sbjct:  684 AVQLLHSFPLDTRLKDGSLFWQSPKRPPSPILFDMTDALHFNFIVSAARLFASVYNISYTE----KDLSHETI---------FHIVSDVKIPEYKPSEKKIETDES--ARKPDQTKLAVSSEEEREAIGQLEEAIAAAAVTKD---------HLQMTPVSFEKDDDRNGHIDFITAASNLRARMYNIEAADRLKTKRIAGKIIPAIATSTAAVSGLVGLELIKV 883
[Close]
BLAST of mRNA_H-elongata_contig16078.3894.1 vs. uniprot
Match: H3B1G5_LATCH (Ubiquitin like modifier activating enzyme 6 n=2 Tax=Latimeria chalumnae TaxID=7897 RepID=H3B1G5_LATCH)

HSP 1 Score: 119 bits (297), Expect = 5.110e-27
Identity = 86/223 (38.57%), Postives = 118/223 (52.91%), Query Frame = 1 
Query:    7 ALELLRQHPLGSTDEEGDSFWVGVRKPPTPLKLDSSNALHREFVWWAAVLRAGGYGIDIPRCERPRSASIPTASTGGGASRQLEIVSRGKGAGHRRGKWDTRSEESRNARRSHPSKLKCRQRRIRGVVGVLHPTRRPVVRESDPDEDIEPLIELELKRLREADDDLNGHVDFVTAASNLRALGYGIPAADRLSTKRIAGKIVPAIATTTAVVSGLSCLELLKV 675
            A++LL   PL +   +G  FW   ++PP+P++ D ++ LH  FV  AA L A  Y  +IP  E+  S  +             +IVS+ K    R  +    ++ES   ++   S + C   R+   V  L    + +       E+++  I        E DDD NGH+DF+TAASNLRA  Y I  ADRL TKRIAGKI+PAIAT TA VSGL  LEL+KV
Sbjct:  691 AVQLLHSFPLDTRLNDGSLFWQSPKRPPSPIEFDINDVLHFSFVVNAAKLFANTY--NIPYTEQDLSKDVV-----------FKIVSKVKIPEFRPSEKRVETDES--VKKPELSSVNCEDERV--AVDQLE---KAIASGLSRKENLQLTI-----ISFEKDDDSNGHIDFITAASNLRAKMYSIDPADRLKTKRIAGKIIPAIATATAAVSGLVALELIKV 888
[Close]
BLAST of mRNA_H-elongata_contig16078.3894.1 vs. uniprot
Match: W5N435_LEPOC (Ubiquitin like modifier activating enzyme 6 n=6 Tax=Lepisosteidae TaxID=7915 RepID=W5N435_LEPOC)

HSP 1 Score: 119 bits (297), Expect = 5.130e-27
Identity = 83/233 (35.62%), Postives = 114/233 (48.93%), Query Frame = 1 
Query:    7 ALELLRQHPLGSTDEEGDSFWVGVRKPPTPLKLDSSNALHREFVWWAAVLRAGGYGIDIPRCERPRSASIPTASTGGGASRQLEIVSRGKGAGHRRGKWDTRSEESRNARRSHPSKLKCRQRRIRGVVGVLHPTRRPVVRESDPDED---IEPLIELELKRLREADDDLNGHVDFVTAASNLRALGYGIPAADRLSTKRIAGKIVPAIATTTAVVSGLSCLELLKVQHSRCLD 696
            A++LL   PL +  ++G  FW   ++PP+P+  D  + LH  F+  AA L A  Y  +IP  E+  S         G    + +               + + E   NAR+   +KL       +  +  L      V+      +D   I+P+         E DDD NGH+DF+TAASNLRA  Y I  ADRL TKRIAGKI+PAIAT TA VSGL  LE++K+    C D
Sbjct:  701 AVQLLHSFPLDTKLKDGSLFWQSPKRPPSPIDFDFKDPLHFSFIVSAARLFAEMY--NIPHAEKDLSPETIIRIISGVTIPEYKPA-------------EKKIEIDENARKPEQTKLVVSSEEEQEAISQLE----DVISSHAVTKDHLHIKPVF-------FEKDDDSNGHIDFITAASNLRARMYNIEPADRLKTKRIAGKIIPAIATATAAVSGLVALEIIKIVGGHCFD 907
[Close]
BLAST of mRNA_H-elongata_contig16078.3894.1 vs. uniprot
Match: UPI0019001A9A (ubiquitin-like modifier-activating enzyme 6 isoform X1 n=2 Tax=Salvelinus namaycush TaxID=8040 RepID=UPI0019001A9A)

HSP 1 Score: 116 bits (290), Expect = 1.390e-26
Identity = 85/223 (38.12%), Postives = 116/223 (52.02%), Query Frame = 1 
Query:    7 ALELLRQHPLGSTDEEGDSFWVGVRKPPTPLKLDSSNALHREFVWWAAVLRAGGYGIDIPRCERPRSASIPTASTGGGASRQLEIVSRGKGAGHRRGKWDTRSEESRNARRSHPSKLKCRQRRIRGVVGVLHPTRRPVVRESDPDEDIEPLIELELKRLREADDDLNGHVDFVTAASNLRALGYGIPAADRLSTKRIAGKIVPAIATTTAVVSGLSCLELLKV 675
            AL+LL   PL +  ++G  FW   ++PP+P++ D  ++LH  FV  AA L A  Y  +IP  ++  S            SR L  ++  +   +R    + R E   N ++    KL       R  +  L         E+   + + P       R+ E DDDLNGH+DFV AAS+LRA  Y I  ADRL TKRIAGKI+PAIAT TA V+GL  LEL+KV
Sbjct:  122 ALQLLHSFPLDTRLKDGSLFWQSPKRPPSPIEFDLKDSLHFSFVVSAARLYAEIY--NIPYSDKDLSQEA--------VSRMLSEITVPE---YRPA--EKRIETDENVKKPDQMKLSVSSEEEREAIAQLE--------EAISADHVTPERLRMSPRMFEKDDDLNGHMDFVAAASSLRARMYSIEVADRLKTKRIAGKIIPAIATATAAVAGLVSLELVKV 321
[Close]
BLAST of mRNA_H-elongata_contig16078.3894.1 vs. uniprot
Match: A0A674BDG4_SALTR (Ubiquitin like modifier activating enzyme 6 n=6 Tax=Salmonidae TaxID=8015 RepID=A0A674BDG4_SALTR)

HSP 1 Score: 117 bits (293), Expect = 1.730e-26
Identity = 86/223 (38.57%), Postives = 116/223 (52.02%), Query Frame = 1 
Query:    7 ALELLRQHPLGSTDEEGDSFWVGVRKPPTPLKLDSSNALHREFVWWAAVLRAGGYGIDIPRCERPRSASIPTASTGGGASRQLEIVSRGKGAGHRRGKWDTRSEESRNARRSHPSKLKCRQRRIRGVVGVLHPTRRPVVRESDPDEDIEPLIELELKRLREADDDLNGHVDFVTAASNLRALGYGIPAADRLSTKRIAGKIVPAIATTTAVVSGLSCLELLKV 675
            AL+LL   PL +  ++G  FW   ++PP+P++ D  ++LH  FV  AA L A  Y  +IP  E+  S            SR L  ++  +   +R    + R E   N ++    KL       R  +  L         E+   + + P       R+ E DDDLNGH+DFV AAS+LRA  Y I  ADRL TKRIAGKI+PAIAT TA V+GL  LEL+KV
Sbjct:  647 ALQLLHSFPLDTRLKDGSLFWQSPKRPPSPIEFDLKDSLHFSFVVSAARLYAEIY--NIPYSEKDLSQEA--------VSRMLSEITIPE---YRPA--EKRIETDENVKKPDQMKLSVSSEEEREAIAQLE--------EAITADHVTPERLRMSPRMFEKDDDLNGHMDFVAAASSLRARMYSIEVADRLKTKRIAGKIIPAIATATAAVAGLVSLELVKV 846
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig16078.3894.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FPC4_ECTSI3.430e-6257.02Ubiquitin activating enzyme E1 n=1 Tax=Ectocarpus ... [more]
A0A7S4D0L7_9EUGL1.280e-3035.74Hypothetical protein n=1 Tax=Eutreptiella gymnasti... [more]
W7UBG5_9STRA1.550e-2735.24Ubiquitin-activating enzyme e1 n=1 Tax=Nannochloro... [more]
UPI001EAEDD841.870e-2738.12ubiquitin-like modifier-activating enzyme 6 n=1 Ta... [more]
A0A4D9D8Q8_9STRA2.210e-2734.93UBA_e1_C domain-containing protein n=1 Tax=Nannoch... [more]
UPI00145BC75E3.760e-2738.84LOW QUALITY PROTEIN: ubiquitin-like modifier-activ... [more]
H3B1G5_LATCH5.110e-2738.57Ubiquitin like modifier activating enzyme 6 n=2 Ta... [more]
W5N435_LEPOC5.130e-2735.62Ubiquitin like modifier activating enzyme 6 n=6 Ta... [more]
UPI0019001A9A1.390e-2638.12ubiquitin-like modifier-activating enzyme 6 isofor... [more]
A0A674BDG4_SALTR1.730e-2638.57Ubiquitin like modifier activating enzyme 6 n=6 Ta... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig16078contigH-elongata_contig16078:1714..6710 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score216.5
Seed ortholog evalue1.3e-53
Seed eggNOG ortholog2880.D7FPC4
Preferred nameINTS1
KEGG koko:K03178,ko:K13138
KEGG Pathwayko04120,ko05012,map04120,map05012
GOsGO:0000428,GO:0001701,GO:0001824,GO:0001832,GO:0001833,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0006139,GO:0006351,GO:0006366,GO:0006396,GO:0006725,GO:0006807,GO:0007275,GO:0008150,GO:0008152,GO:0008283,GO:0009058,GO:0009059,GO:0009301,GO:0009790,GO:0009792,GO:0009892,GO:0009987,GO:0010466,GO:0010467,GO:0010605,GO:0010941,GO:0010951,GO:0016070,GO:0016073,GO:0016180,GO:0016591,GO:0018130,GO:0019222,GO:0019438,GO:0030162,GO:0030880,GO:0031123,GO:0031323,GO:0031324,GO:0031974,GO:0031981,GO:0032039,GO:0032268,GO:0032269,GO:0032501,GO:0032502,GO:0032774,GO:0032991,GO:0034470,GO:0034472,GO:0034474,GO:0034641,GO:0034645,GO:0034654,GO:0034660,GO:0040007,GO:0042795,GO:0042981,GO:0043009,GO:0043066,GO:0043067,GO:0043069,GO:0043086,GO:0043154,GO:0043170,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043233,GO:0043281,GO:0043628,GO:0044092,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044271,GO:0044422,GO:0044424,GO:0044428,GO:0044446,GO:0044451,GO:0044464,GO:0045861,GO:0046483,GO:0048519,GO:0048523,GO:0048589,GO:0048856,GO:0050789,GO:0050790,GO:0050794,GO:0051171,GO:0051172,GO:0051246,GO:0051248,GO:0051336,GO:0051346,GO:0052547,GO:0052548,GO:0055029,GO:0060255,GO:0060548,GO:0061695,GO:0065007,GO:0065009,GO:0070013,GO:0071704,GO:0080090,GO:0090304,GO:0097659,GO:0098781,GO:1901360,GO:1901362,GO:1901576,GO:1902494,GO:1990234,GO:2000116,GO:2000117
EggNOG free text desc.U2 snRNA 3'-end processing
EggNOG OGsCOG0476@1,KOG2012@2759,KOG4596@1,KOG4596@2759
EC6.2.1.45
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko01000,ko03041,ko04121,ko04147
Hectar predicted targeting categoryother localisation
Exons4
Model size699
Cds size699
Stop1
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig16078.3894.1prot_H-elongata_contig16078.3894.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig16078 1714..6710 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929943.5871477-CDS-H-elongata_contig16078:1713..19161622929943.5871477-CDS-H-elongata_contig16078:1713..1916Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig16078 1714..1916 +
1691679217.5816388-CDS-H-elongata_contig16078:1713..19161691679217.5816388-CDS-H-elongata_contig16078:1713..1916Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig16078 1714..1916 +
1622929943.6032834-CDS-H-elongata_contig16078:2340..25511622929943.6032834-CDS-H-elongata_contig16078:2340..2551Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig16078 2341..2551 +
1691679217.5942914-CDS-H-elongata_contig16078:2340..25511691679217.5942914-CDS-H-elongata_contig16078:2340..2551Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig16078 2341..2551 +
1622929943.6223466-CDS-H-elongata_contig16078:5111..51891622929943.6223466-CDS-H-elongata_contig16078:5111..5189Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig16078 5112..5189 +
1691679217.6133428-CDS-H-elongata_contig16078:5111..51891691679217.6133428-CDS-H-elongata_contig16078:5111..5189Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig16078 5112..5189 +
1622929943.63735-CDS-H-elongata_contig16078:6503..67101622929943.63735-CDS-H-elongata_contig16078:6503..6710Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig16078 6504..6710 +
1691679217.6236653-CDS-H-elongata_contig16078:6503..67101691679217.6236653-CDS-H-elongata_contig16078:6503..6710Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig16078 6504..6710 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig16078.3894.1

>prot_H-elongata_contig16078.3894.1 ID=prot_H-elongata_contig16078.3894.1|Name=mRNA_H-elongata_contig16078.3894.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=233bp
DSALELLRQHPLGSTDEEGDSFWVGVRKPPTPLKLDSSNALHREFVWWAA
VLRAGGYGIDIPRCERPRSASIPTASTGGGASRQLEIVSRGKGAGHRRGK
WDTRSEESRNARRSHPSKLKCRQRRIRGVVGVLHPTRRPVVRESDPDEDI
EPLIELELKRLREADDDLNGHVDFVTAASNLRALGYGIPAADRLSTKRIA
GKIVPAIATTTAVVSGLSCLELLKVQHSRCLD*
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mRNA from alignment at H-elongata_contig16078:1714..6710+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig16078.3894.1 ID=mRNA_H-elongata_contig16078.3894.1|Name=mRNA_H-elongata_contig16078.3894.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=4997bp|location=Sequence derived from alignment at H-elongata_contig16078:1714..6710+ (Himanthalia elongata Himel1 dioecious)
GACTCGGCCTTAGAGCTACTGAGGCAGCATCCGCTCGGTAGCACGGATGA
GGAGGGAGATTCCTTCTGGGTCGGGGTTAGGAAACCGCCGACCCCGCTGA
AGCTGGACTCTTCCAATGCGTTGCATAGGGAGTTCGTGTGGTGGGCGGCG
GTCCTCCGTGCGGGGGGTTACGGTATCGACATCCCCAGGTGCGAGCGTCC
TCGGTGGCTTCTCACCTGCATTGTTTATCGTCCTGCGGATCGCGCATATA
GAACCCGGCGCTCCTATTTTTATTTAGACACGACACGTACGCAGCGCACT
CTGTCCTTTGGGGTGTCATCGCATCAAGGTGTGGTGTTACCCGGAAGGGA
ATGGCTGGCACCAGCCCTCCTATTCTCGTTCGGTTGGCTCTTGTGGCATA
GAGAGCTGTAAAACTCTGTATTTTCTATACTGCTTGTGTTCTGTATCCTT
TATTATCTATACTTTGTACCCTATATTATATGTGAATTGTACCCTATATT
ATATGTGCCGAGGACCAGCGGGGCAAGCGACAGCAGCAGTTCATCGGCTT
ACCGTCTACAGAGTTTTCGCACCAATCGGCGTCCCTACATGACGTCGATT
GATGCGAGAACTCGTCGATACTGACAGTTCAGCAAGTATACCAACAGCAT
CGACTGGGGGTGGTGCATCTCGACAACTTGAAATCGTTTCCCGCGGCAAA
GGTGCGGGACACCGTCGCGGAAAATGGGACACCCGAAGCGAGGAGAGTAG
AAATGCTCGGAGGTCACACCCGAGTAAGCTAAAGTGTCGACAACGGAGAA
TTCGAGGCGTGGTGGGAGTGCTGCACCCAACACGTCGTGTCGTCAGAATT
ATGGCAGTAAGTTGGGTAGACATCTGGGACTCTGAGCGAAAGGCAGAGGG
CACGCGCTCGGAAAAAACGACGGGGGAAGCGGGCGAGGAAGAAGGCCGCC
CGCATGAAACACAGGACCGCCAGGGCGGGACCTCGGCTTGACGAGCTTAC
GTTCGGCACGTTCATTGTTCGCTTAGCAGCTGTCAACGGTCTTAAAGGCA
ACGGTCATATCGACTACCTGTATTGGTCATATAAAGGCATTGGTCATATC
GACTACCTGTGCTGCAAGAGATTGTGGTGTTATTGGACTGCAGGTGACAA
AACGAGACGGAGCATCTGAAATAACCGCATCTAGATTCCGAATCTATTTT
AGTGGTGATTACAGCGGGGTCAAAGAGAAAAAGGGGCAACATGGGGTGGG
ACTAGCGATAAAGGAGGATATCGTTAACAAGGCCTTCGTCAAGGGTGTGT
GCTCGTGCCCCTCTTTTTCAATATCTTCGCGGCGGTTATAAACGTGACCT
ACAGGCATTTTAAGGCAGACAGCGACATCATAGACAGACGCCCTGGTGCA
CCTCAGCAGGAAAACGAGGGTGGGGGGGGCGGAGGATAGCAACCACCGGA
GCTCCAACAGCTCTGATGACGTCACTGTGGGGCATACTATACGCTGACGA
TGCCAGAGTGATCGTAATCGCCCGAGCAGCCCAGGAAGATGATGGGAGTG
ATCGTGGTCGTGTGCGCGGCGTTCGGTCTCGCCGTATCGGAGGCCAAGGC
TGAGATCATGTGTTTACGCACGAAGGGAATGCCGGAGACCACCGCCACAT
TCAGCGTAGAAGCAGCCGGCCAGATGTACAACCAAACGAACGAGTTTATA
TCCCTCGCGGTCAACCGGCGCATACGCAACGCATGGTGCATCTTCCGGAA
GTACACCCTCGAACTGTACGACCGACCAAGCGTCCCCCTGGGGCTCAAAA
TCCGGATGCTGTACGGCTGCGTCACATGGAGCCCGCGTGCGTGCCACTAC
GACACGCTGCGCCGAGTTCTCGCTGCATCGGTTGGCGAAAGAACAATCGC
ACCGATCACCCGATCTCCTATATGGATACCCTCATGAAGACGGGAAGTGA
AAGCATGGAGACGATCATGTTCAGGAGGCGGATCCTGTTCGCGGGATTTG
CGGCGCGCTTGGACGGCACGAGACTGCCCAAGGGCCTGATGTGTGGAGAT
ATCATGGGGAGTGTGGACTGCGTGGGAGAGCAGGAAAAAGAGTGGATAGG
TTTTCTTCTTGAGGACATCAAAGCTTTTGGTATGAACGCCGGCCGACCAT
TGGATAATTGCAGCCCAGGACGAGGGGGAATGGTGCAAGATGGCGAAACA
AGGGGCGGGAATGTTTTATGGTGAAGTGGATCGCTGCAGAGAAAATCAGG
ACTGGACTACGGCATGTAGTAGTATGTCTGAACGTGACGGGGAGGATCAA
GGAGAGGATAGCCCAAAGCAAGCGTGCTCATGCTGGTTTGCCATAGTTGA
TTAGGCGTTTTTGTTTGCCGATATCATATATCGCCTTTCTCTGCGTTACG
TTTTTTTTTCTTTTTTTTTCTTCTTTCATTTTCGCTTTTTTAATTGTTTT
CATCGAATCCGCGGCTCTCCATTCAATCGTTCTCTGATAGACCCGCGTCC
CGACAGCCACACGCATTGACAACTATATGTGTCCTCTTTTTTGTGCCTTT
TTTTGTTTTTGTTCATTTTCTTTAGAGATTTTGCTTTTTCCGAGTATTTG
TATTATGAACCATTACCATTTCCTTTTGTATTGGAGAGTACATTGAACGA
TTTCCTTCCGGATGATGAGTTTTCAATATTGTCACCACGGGTTGGATTTT
AACATCAGCTTATGGGAGAATTCAATCATTCAATCAATCAATGAAATATA
ATTGCTGTTTTCTCTGTACCCTATACCCCTAAATCTGAGTCCTGTACTCC
GCATCCTGTGCCCTGTACCCTAAACGATGTGTCCTTAGATAGAAGTCCCA
CAGCCCGCACCCTGTACCCTCTTGAATCATGAACCCCGTACCTTCTTCCC
TGTACCCTAACACACGAATATTTCTTCTCGAACTCTGTACCCTGTACGCG
GTAACACACGCCCTGTACCCTGTACCCTTCAATCCAAGCCCCGTACCCCG
TACTTCATAACCTAAATACCTTGTACCTTGTACCCCATGCCCTGATTTAT
GTGCCGTAAACTATCAGCCTCGTACTATGTCCGCACTCTGTACCCTAGAC
CCTTAAATCGGAGTCCTGGACCCCGTATCCCTCTGCCCTGTACCCTGTAT
TCTGCGCCCCGCACATTATACCTTATACCCTATATAATCATTTATTTGTT
ACGGTTTTTGTCTTCTCTTCCCTCGTGTCTCGTGATCCAACTCGCCCCCT
TGGAAGATCTTTGGACGATCTCGCTGATGAACCCCCTCGAGGAGTCGATC
TTCTCAACAGCAAGGGCGGGGCTTTAGGGGACGTGGATCCACGCCACCCC
GGACGTGGGATCAAAACCGAAGCTGAAGCCGCAACCACAGCCACGGAGCC
CGTTGTGAGAGAATCTGACCCGGACGAAGACATCGAGCCGCTCATTGAAC
TGGAGTTGAAGAGGCTCAGGGAGGCGGTGGCGACGAGGTGGCGGGACTTG
GGGGGCGAGGCGGGTCCCGTGATCCGGTCGGTCGAGTTCGAGAAGGTGTG
ATGTGCGAGAGGCAAGCGGCGAACGGAAGCGCCTTCCCGATTTGTTGAAC
TCCTCCTTGTTTTGACTCCCGTGCTGCCGTGATAGCTTGCGACTGGCTGT
ACGACGCGCGTTGATTGCTTGATTGATCTTTTGGTTGGTTGGTTGGTTGG
TTGGTTGGTTGGTTCATTGGTTCAGTGTTTGGGGTGTATCCCTTCCACGG
TGGTGCTATTTTGACCAAAGCTGGCATGTACTACTTGCCTGTGCACAGCG
TGTGTGGTGTGTGGTAACTGATTTACTGGCCACATAGCTATCGTCAAGAA
GGCTCATCAAGGACCGACCAAGAAATCCCGTCCCGGGCATACATCACCGA
TAATTGCTTTAGCTGGCGCGGGAGGGGTGGAAATAAGAGTTTCCCTTCCC
CGTGGGTTTCCACCAAAGTAGGGATGTCGCTGTTTTTCTCGCAGCACAGA
GATAAACATAAAATATCCTTGATACTATAGTAGCGATATTGATACAGACA
ATAAATAGTTTTGAGCCATCATTGGGGAACACTATTAATCACATGTATGT
GACGATTTTGGGTTGCACATCTCACGGTGCTAAGAAGGCATGGATGTTCG
GAGGGCTTGAATGAGTTTACTTTTTTTTTGAAGAAAAATAATGACTTTTG
ATTGAGGTGCATGTTATTTACAAGCTTTTGTCGCTGTCTAAGCCATGGCT
GTTATATATAGTATTTTTCTTCTTTGGTTTCGTGTCGCCCCTTTCTTCTC
CAGAGCACACAAGAATATTTCGCGTCTGCGCTCGCTTGGCAATATCTTCA
TGTTTACTTTTTACAAACGCGCGCCGATTCGACAGTCCCGTCTATCCCAG
CCCGTGCTTTACTTCTTCCCTTCGTTCCTCGCTCTCTCTCGCCCTCCCTC
CCTCCCGGATATTTCGATTGTCTATCCGTGCGTGGTATACCGGGTGAGCT
CCTCCGATCCCCGTGAAAAACGCCTCTCGCGTCGCATCGTGTCGCGTCCG
GCCCCACGAGGCCGAAGGCCTTAGATAGTTATAGTCTAGTACCTGTTTTT
GCCGTGCCCTGTCGGAAAGGGATTTCGTTCCTGTTTCTTCGTTCCGCCAA
GGATCTAAATGCCTTCCGACTCACCAACAACCCACCCCTCCGTCCTTCCG
TGGACGCGTGGCCTAGGCCTAATAGCTAAGGCATGTAAACCTTGAATACG
CCCCCCCCCACTATCTCTTTTTATTTTTTGTTGTTGTAAGGATGACGACC
TCAACGGGCACGTGGACTTCGTGACGGCCGCGTCCAACCTCCGGGCGCTG
GGCTACGGTATCCCCGCGGCGGACAGGCTGTCGACGAAGCGTATCGCCGG
GAAGATTGTTCCCGCTATCGCGACGACCACGGCAGTCGTGTCCGGGCTGT
CGTGCCTCGAGCTGCTCAAGGTGCAGCACAGTAGGTGTCTGGATTGA
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Coding sequence (CDS) from alignment at H-elongata_contig16078:1714..6710+

>mRNA_H-elongata_contig16078.3894.1 ID=mRNA_H-elongata_contig16078.3894.1|Name=mRNA_H-elongata_contig16078.3894.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=1398bp|location=Sequence derived from alignment at H-elongata_contig16078:1714..6710+ (Himanthalia elongata Himel1 dioecious)
GACTCGGCCTTAGAGCTACTGAGGCAGCATCCGCTCGGTAGCACGGATGA
GGAGGGAGATTCCTTCTGGGTCGGGGTTAGGAAACCGCCGACCCCGCTGA
AGCTGGACTCTTCCAATGCGTTGCATAGGGAGTTCGTGTGGTGGGCGGCG
GTCCTCCGTGCGGGGGGTTACGGTATCGACATCCCCAGGTGCGAGCGTCC
TCGGACTCGGCCTTAGAGCTACTGAGGCAGCATCCGCTCGGTAGCACGGA
TGAGGAGGGAGATTCCTTCTGGGTCGGGGTTAGGAAACCGCCGACCCCGC
TGAAGCTGGACTCTTCCAATGCGTTGCATAGGGAGTTCGTGTGGTGGGCG
GCGGTCCTCCGTGCGGGGGGTTACGGTATCGACATCCCCAGGTGCGAGCG
TCCTCGTTCAGCAAGTATACCAACAGCATCGACTGGGGGTGGTGCATCTC
GACAACTTGAAATCGTTTCCCGCGGCAAAGGTGCGGGACACCGTCGCGGA
AAATGGGACACCCGAAGCGAGGAGAGTAGAAATGCTCGGAGGTCACACCC
GAGTAAGCTAAAGTGTCGACAACGGAGAATTCGAGGCGTGGTGGGAGTGC
TGCACCCAACACGTCGTTTCAGCAAGTATACCAACAGCATCGACTGGGGG
TGGTGCATCTCGACAACTTGAAATCGTTTCCCGCGGCAAAGGTGCGGGAC
ACCGTCGCGGAAAATGGGACACCCGAAGCGAGGAGAGTAGAAATGCTCGG
AGGTCACACCCGAGTAAGCTAAAGTGTCGACAACGGAGAATTCGAGGCGT
GGTGGGAGTGCTGCACCCAACACGTCGTCCCGTTGTGAGAGAATCTGACC
CGGACGAAGACATCGAGCCGCTCATTGAACTGGAGTTGAAGAGGCTCAGG
GAGGCGCCCGTTGTGAGAGAATCTGACCCGGACGAAGACATCGAGCCGCT
CATTGAACTGGAGTTGAAGAGGCTCAGGGAGGCGGATGACGACCTCAACG
GGCACGTGGACTTCGTGACGGCCGCGTCCAACCTCCGGGCGCTGGGCTAC
GGTATCCCCGCGGCGGACAGGCTGTCGACGAAGCGTATCGCCGGGAAGAT
TGTTCCCGCTATCGCGACGACCACGGCAGTCGTGTCCGGGCTGTCGTGCC
TCGAGCTGCTCAAGGTGCAGCACAGTAGGTGTCTGGATTGAGATGACGAC
CTCAACGGGCACGTGGACTTCGTGACGGCCGCGTCCAACCTCCGGGCGCT
GGGCTACGGTATCCCCGCGGCGGACAGGCTGTCGACGAAGCGTATCGCCG
GGAAGATTGTTCCCGCTATCGCGACGACCACGGCAGTCGTGTCCGGGCTG
TCGTGCCTCGAGCTGCTCAAGGTGCAGCACAGTAGGTGTCTGGATTGA
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