mRNA_H-elongata_contig160640.3883.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig160640.3883.1
Unique NamemRNA_H-elongata_contig160640.3883.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig160640.3883.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig160640contigH-elongata_contig160640:1..908 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons3
Model size402
Cds size402
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig160640.3883.1prot_H-elongata_contig160640.3883.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig160640 1..908 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929942.3171568-CDS-H-elongata_contig160640:0..2371622929942.3171568-CDS-H-elongata_contig160640:0..237Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig160640 1..237 +
1691679217.0223992-CDS-H-elongata_contig160640:0..2371691679217.0223992-CDS-H-elongata_contig160640:0..237Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig160640 1..237 +
1622929942.3331342-CDS-H-elongata_contig160640:496..5501622929942.3331342-CDS-H-elongata_contig160640:496..550Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig160640 497..550 +
1691679217.0336707-CDS-H-elongata_contig160640:496..5501691679217.0336707-CDS-H-elongata_contig160640:496..550Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig160640 497..550 +
1622929942.3498905-CDS-H-elongata_contig160640:797..9081622929942.3498905-CDS-H-elongata_contig160640:797..908Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig160640 798..908 +
1691679217.0424018-CDS-H-elongata_contig160640:797..9081691679217.0424018-CDS-H-elongata_contig160640:797..908Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig160640 798..908 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig160640.3883.1

>prot_H-elongata_contig160640.3883.1 ID=prot_H-elongata_contig160640.3883.1|Name=mRNA_H-elongata_contig160640.3883.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=134bp
MVTPTPPHQVGRCENLMVLDLRGTALTSLPPELAQCKALNFLHVGRNKIT
GFGRELCEGLVNLEELYLYRNKIETLPLEVGCLSKLVKLSLSGNNIKGIP
AEIGACVHLAELYINNNQKVPAFSIGNISTLGSL
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mRNA from alignment at H-elongata_contig160640:1..908+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig160640.3883.1 ID=mRNA_H-elongata_contig160640.3883.1|Name=mRNA_H-elongata_contig160640.3883.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=908bp|location=Sequence derived from alignment at H-elongata_contig160640:1..908+ (Himanthalia elongata Himel1 dioecious)
ATGGTGACCCCGACACCGCCTCATCAGGTGGGTCGGTGCGAAAATCTAAT
GGTGCTAGATCTCCGAGGGACCGCGCTGACCAGCTTACCCCCGGAGCTGG
CCCAATGCAAAGCGTTGAATTTTCTTCATGTGGGACGCAACAAGATAACG
GGGTTCGGGCGGGAGCTCTGCGAAGGGCTGGTGAACCTGGAAGAGTTGTA
CCTGTACCGGAACAAGATTGAGACGCTTCCCCTCGAGGTGGGGGAATACG
CGCTAGGGTGCAGCACGAATCGCACCGCACAAACGAGACTGACTGATCAA
TACCTTAGGAGCTATAAGTTGCTTGAATATATTTTCCTTTCGCCAGGCTA
ACTAAACAGAGAAGGGCACAAAAACAATACTACTAGTCACCCTGCCTGGT
GGTCACTGCACAATCATGTCTGTTGTAACTTGTCGCCCGATCTGTGGCAT
TTATTTCCCGGCGCGATACATTTTCGCATGTGCTGGCATTTTTTAGGTCG
GCTGCCTCTCGAAGCTGGTAAAACTATCCCTGAGCGGCAACAATATCAAG
GTGACAATCTTTGCTCCTCGATCCACCCAAAATTGTACCGCGAATTGGTT
GTTACCTGATTGAACGAACGCAAAAAGGCCACCTCCCTTTCATCCATCCG
AAGTCAAAATGTGCGTTGATTGGACGGTTAGGGCAACTACGTTAAATCCT
CGAAAATCAACATGTCGCACTTACTTGTTCCCACTCACAAATAAAGGCTC
GCATCGCCCTAAAAGCCTGTACCACACGTCTCCAACGAAACCTGCAGGGA
ATTCCAGCGGAGATTGGCGCTTGCGTGCACTTAGCAGAGCTATACATTAA
CAACAATCAGAAGGTGCCTGCGTTTTCGATAGGCAATATCTCGACGTTGG
GGTCGTTG
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Coding sequence (CDS) from alignment at H-elongata_contig160640:1..908+

>mRNA_H-elongata_contig160640.3883.1 ID=mRNA_H-elongata_contig160640.3883.1|Name=mRNA_H-elongata_contig160640.3883.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=804bp|location=Sequence derived from alignment at H-elongata_contig160640:1..908+ (Himanthalia elongata Himel1 dioecious)
ATGGTGACCCCGACACCGCCTCATCAGGTGGGTCGGTGCGAAAATCTAAT
GGTGCTAGATCTCCGAGGGACCGCGCTGACCAGCTTACCCCCGGAGCTGG
CCCAATGCAAAGCGTTGAATTTTCTTCATGTGGGACGCAACAAGATAACG
GGGTTCGGGCGGGAGCTCTGCGAAGGGCTGGTGAACCTGGAAGAGTTGTA
CCTGTACCGGAACAAGATTGAGACGCTTCCCCTCGAGATGGTGACCCCGA
CACCGCCTCATCAGGTGGGTCGGTGCGAAAATCTAATGGTGCTAGATCTC
CGAGGGACCGCGCTGACCAGCTTACCCCCGGAGCTGGCCCAATGCAAAGC
GTTGAATTTTCTTCATGTGGGACGCAACAAGATAACGGGGTTCGGGCGGG
AGCTCTGCGAAGGGCTGGTGAACCTGGAAGAGTTGTACCTGTACCGGAAC
AAGATTGAGACGCTTCCCCTCGAGGTCGGCTGCCTCTCGAAGCTGGTAAA
ACTATCCCTGAGCGGCAACAATATCAAGGTCGGCTGCCTCTCGAAGCTGG
TAAAACTATCCCTGAGCGGCAACAATATCAAGGGAATTCCAGCGGAGATT
GGCGCTTGCGTGCACTTAGCAGAGCTATACATTAACAACAATCAGAAGGT
GCCTGCGTTTTCGATAGGCAATATCTCGACGTTGGGGTCGTTGGGAATTC
CAGCGGAGATTGGCGCTTGCGTGCACTTAGCAGAGCTATACATTAACAAC
AATCAGAAGGTGCCTGCGTTTTCGATAGGCAATATCTCGACGTTGGGGTC
GTTG
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