mRNA_H-elongata_contig15939.3831.1 (mRNA) Himanthalia elongata Himel1 dioecious
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Overview
Homology
BLAST of mRNA_H-elongata_contig15939.3831.1 vs. uniprot
Match: A0A6H5KWQ8_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KWQ8_9PHAE) HSP 1 Score: 159 bits (401), Expect = 7.230e-42 Identity = 121/289 (41.87%), Postives = 140/289 (48.44%), Query Frame = 1
Query: 1 ITLYFNRSRVGVFSTFLVVENLANPADLQV-----------------------------SGILEHNLASTDC-----------------------WAIYGVEGG------------------------------------------------------KKPLVLDFGDVYEGELYQRRSFVIVNHASIPLEFQLSSSLLASELNFSLSSATLKQFKFVHVEANTRLQ---------KPPAKVLR-GFEQELPTS----EPCQDAEAVLVRERLSITCRLVKDFQQEIQL 507
+TLYFNRSRVGVFSTF+VV+NL NPAD++V + E + AS GG ++PLVLD+GDVYEG+LYQRRSFVIVNHA++PLEFQLSSSL ASELNFSLS+ TLKQFK VHVEA TRLQ K PA V R G ++ L S +P ++AEAV VRERLSITCRLVKDFQQEIQL
Sbjct: 2707 VTLYFNRSRVGVFSTFMVVDNLTNPADIKVVRVEMEVVEGGPKDMVPQLFEVLVSPAVPASTRELSTASGSSNXXXXXXXXXXXXXXXXXXXXXXXXXXESSGGXXXXXXXXXXXXXXXXXXDKTDGVVXXXXXXXXXXXXXXXXXXXXXXXXXXXXRREPLVLDYGDVYEGKLYQRRSFVIVNHAAMPLEFQLSSSLPASELNFSLSAVTLKQFKSVHVEAKTRLQVFAHYRPVEKSPAAVARKGSQRALTVSAAADDPGKEAEAVTVRERLSITCRLVKDFQQEIQL 2995
BLAST of mRNA_H-elongata_contig15939.3831.1 vs. uniprot
Match: D8LHH6_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LHH6_ECTSI) HSP 1 Score: 154 bits (389), Expect = 2.990e-40 Identity = 91/131 (69.47%), Postives = 103/131 (78.63%), Query Frame = 1
Query: 157 KKPLVLDFGDVYEGELYQRRSFVIVNHASIPLEFQLSSSLLASELNFSLSSATLKQFKFVHVEANTRLQ---------KPPAKVLR-GFEQELPTS----EPCQDAEAVLVRERLSITCRLVKDFQQEIQL 507
++PLVLD+GDVYEG+LYQRRSFVIVN A++PLEFQLSSSL ASELNFSLS+ATLKQFK VHVEA T LQ K PA V R G ++ L S +P ++AEAV VRERLSITCRLVKDFQQEIQL
Sbjct: 4266 REPLVLDYGDVYEGKLYQRRSFVIVNRAAMPLEFQLSSSLPASELNFSLSAATLKQFKSVHVEAKTSLQVYAHYRPVAKSPAAVARKGSQRALDVSAAADDPGKEAEAVTVRERLSITCRLVKDFQQEIQL 4396
BLAST of mRNA_H-elongata_contig15939.3831.1 vs. uniprot
Match: A0A835YYQ9_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YYQ9_9STRA) HSP 1 Score: 145 bits (365), Expect = 4.940e-37 Identity = 91/193 (47.15%), Postives = 124/193 (64.25%), Query Frame = 1
Query: 1 ITLYFNRSRVGVFSTFLVVENLANPADLQV----SGILEHNLASTDCWAIY---------GVEGGKKPLVLDFGDVYEGELYQRRSFVIVNHASIPLEFQLSSSLLASELNFSLSSATLKQFKFVHVEANTRLQ-----KPPAKVLRGFEQELPTSEPCQDAEAVL------VRERLSITCRLVKDFQQEIQL 507
+TLY NR+R+GVFST++V+EN NPADL+ +++ ++ G ++ LV++FGDVYEG+LY RRSFVI+N +++PLEFQLSSSL SELNFSLS+ TLKQFK V +EAN++LQ P A+ ++L +S ++A A L VRE + ITCRLVKDFQQ +QL
Sbjct: 1721 VTLYLNRTRMGVFSTYMVMENARNPADLKFVRVEMEVVQQTHEGQQLARLFQVLVSPFTTGAAQQEQGLVMNFGDVYEGKLYNRRSFVILNSSAMPLEFQLSSSLSPSELNFSLSAVTLKQFKSVTIEANSKLQVFVHYAPVARQAARSTRQL-SSAGWEEANASLPVQEVPVREHIYITCRLVKDFQQVVQL 1912
BLAST of mRNA_H-elongata_contig15939.3831.1 vs. uniprot
Match: A0A151ZJ75_9MYCE (Uncharacterized protein n=1 Tax=Tieghemostelium lacteum TaxID=361077 RepID=A0A151ZJ75_9MYCE) HSP 1 Score: 100 bits (249), Expect = 1.930e-21 Identity = 64/176 (36.36%), Postives = 107/176 (60.80%), Query Frame = 1
Query: 1 ITLYFNRSRVGVFSTFLVVENLANPADLQVSGILEHNLASTDCWAIYGVEGGKKPL-VLDFGDVYEGELYQRRSFVIVNHASIPLEFQLSSSLLAS---ELNFSLSSATLKQFKFVHVEANTRLQKPPAKVLRGFEQELPTSEP--CQDAEAVLVRE-RLSITCRLVKDFQQEIQL 507
I+L F+ ++ ++ST+++VEN NPAD++ I + + VEG + P V++ GDVY G Y RSF++ N +S+PL+F +S+SLL + E+ FSLS + L+QF ++VE N+++ KV F PTS+ DAE+ + ++ ++ + CRL++D+QQ I L
Sbjct: 2688 ISLTFSTKKIEMYSTYIIVENKNNPADIKTIQITLDVVVKQNSHFSVLVEGKQNPSPVINLGDVYYGTTYTDRSFIVSNSSSMPLDFMVSTSLLPTDPFEVCFSLSRSYLRQFNTLYVEPNSQV-----KVFIYFHASDPTSQSGGTSDAESAIPKDIKIYLNCRLIRDYQQVITL 2858
BLAST of mRNA_H-elongata_contig15939.3831.1 vs. uniprot
Match: A0A2K1KP58_PHYPA (Uncharacterized protein n=2 Tax=Physcomitrium patens TaxID=3218 RepID=A0A2K1KP58_PHYPA) HSP 1 Score: 86.3 bits (212), Expect = 1.770e-16 Identity = 60/177 (33.90%), Postives = 98/177 (55.37%), Query Frame = 1
Query: 1 ITLYFNRSRVGVFSTFLVVENLANPADLQVSGILEHNLASTDC--------WAIYGVEGGK-KPLVLDFGDVYEGELYQRRSFVIVNHASIPLEFQLSSSLL---ASELNFSLSSATLKQFKFVHVEANTRLQKPPAKVLRGFEQELPTSEPCQDAEAVLVRERLSITCRLVKDFQQ 495
+ L F+ +GV+ST+LVVENL NPADL+ + +A + + V+G + + + +D ++Y Y+ RSFVIVN AS+ +EF LSS+L ++ELNFSL + +LK+F V ++A + ++ + F P EP + + + + CRLVKD+Q+
Sbjct: 2993 VKLSFSTKAMGVYSTYLVVENLDNPADLKTVHLSMEVVALKNARPEAPLVPFFYVLVQGDRAEGVAIDMAEIYYNFWYRNRSFVIVNEASVAMEFLLSSTLDHNDSTELNFSLENTSLKRFSSVTIDAKSSIR-----LWIHFCIGAPKEEPLAEDMCDELSATIFVNCRLVKDYQR 3164
BLAST of mRNA_H-elongata_contig15939.3831.1 vs. uniprot
Match: F0ZM04_DICPU (Uncharacterized protein n=1 Tax=Dictyostelium purpureum TaxID=5786 RepID=F0ZM04_DICPU) HSP 1 Score: 85.9 bits (211), Expect = 2.410e-16 Identity = 60/178 (33.71%), Postives = 96/178 (53.93%), Query Frame = 1
Query: 1 ITLYFNRSRVGVFSTFLVVENLANPADLQVSGILEHNLASTDCWAIYGVEGGKKPLV-LDFGDVYEGELYQRRSFVIVNHASIPLEFQLSSSLLAS---ELNFSLSSATLKQFKFVHVEANTRLQKPPAKVLRGFEQELPTSEPCQ----DAEAVLVRE-RLSITCRLVKDFQQEIQL 507
IT F+ R+ ++ST+L++EN NPAD++ I + + VEG + P ++ GDVY Y RSF++ N +S+PL+F LS+SL S E+ FSLS + L+QF ++VE N+++ KV F P + +E ++ + CRL++D+QQ I L
Sbjct: 2669 ITATFSTKRIDMYSTYLIIENRNNPADIKTIQITFDVVVKQNSHFSVLVEGKQNPTPSINLGDVYYNITYTDRSFIVSNSSSMPLDFMLSTSLPPSDPTEVCFSLSRSYLRQFNTLYVEPNSQV-----KVFLYFHCPSPQNTSANPLSLSTNNTTTKEIKIFLNCRLIRDYQQVINL 2841
BLAST of mRNA_H-elongata_contig15939.3831.1 vs. uniprot
Match: Q55ED2_DICDI (Uncharacterized protein n=1 Tax=Dictyostelium discoideum TaxID=44689 RepID=Q55ED2_DICDI) HSP 1 Score: 85.9 bits (211), Expect = 2.410e-16 Identity = 58/174 (33.33%), Postives = 99/174 (56.90%), Query Frame = 1
Query: 1 ITLYFNRSRVGVFSTFLVVENLANPADLQVSGILEHNLASTDCWAIYGVEGGKKPL-VLDFGDVYEGELYQRRSFVIVNHASIPLEFQLSSSLLAS---ELNFSLSSATLKQFKFVHVEANTRLQKPPAKVLRGFEQELPTSE-PCQDAEAVLVRERLSITCRLVKDFQQEIQL 507
IT+ F+ R+ ++ST+L++EN NPAD++ I + + VEG + +++ GDV+ Y RSF++ N +S+PL+F LS+SL + E+ FSLS + L+QF ++VE N+++ KV F +P+S P + ++ + CRL++D+QQ I L
Sbjct: 2899 ITVNFSTKRIDMYSTYLIIENRNNPADIKTIQITFDVVVKQNSHFSVLVEGKQNSAPIINLGDVFYNITYTDRSFIVSNSSSMPLDFMLSTSLSPNDPTEVCFSLSRSYLRQFNTLYVEPNSQV-----KVFVYFH--VPSSSNPTNNTSFTQKDIKIFLNCRLIRDYQQIITL 3065
BLAST of mRNA_H-elongata_contig15939.3831.1 vs. uniprot
Match: A0A2R6WBQ4_MARPO (Uncharacterized protein n=2 Tax=Marchantia polymorpha TaxID=3197 RepID=A0A2R6WBQ4_MARPO) HSP 1 Score: 85.5 bits (210), Expect = 3.290e-16 Identity = 65/183 (35.52%), Postives = 99/183 (54.10%), Query Frame = 1
Query: 1 ITLYFNRSRVGVFSTFLVVENLANPADLQVSGILEHNLASTDC--------WAIYGVEGGKKP-LVLDFGDVYEGELYQRRSFVIVNHASIPLEFQLSSSL---LASELNFSLSSATLKQFKFVHVEANTRLQ------KPPAKVLRGFEQELPTSEPCQDAEAVLVRERLSITCRLVKDFQQ 495
+ L F+ +GV+ST+LVVENL NPADL+ + +A + + V+G + +V+D G+VY Y+ RSF IVN A + +EF LSSS+ ++ELNFSL++ +LK+F + + A + ++ PAK E P +E D A + + CRLVKD+QQ
Sbjct: 3047 VQLSFSTKSMGVYSTYLVVENLENPADLKTVHLSLEVVAPRNARPEAPSLTFFHVLVQGDRSEGMVIDMGEVYYNFWYRNRSFAIVNEAPVAMEFLLSSSMDQNESTELNFSLANTSLKRFSSITLGAKSSVRIWIHFCPGPAK-------EKPITEDTCDEMAA----NIFVNCRLVKDYQQ 3218
BLAST of mRNA_H-elongata_contig15939.3831.1 vs. uniprot
Match: A9SLM4_PHYPA (Predicted protein n=5 Tax=Physcomitrium patens TaxID=3218 RepID=A9SLM4_PHYPA) HSP 1 Score: 84.0 bits (206), Expect = 1.130e-15 Identity = 57/177 (32.20%), Postives = 100/177 (56.50%), Query Frame = 1
Query: 1 ITLYFNRSRVGVFSTFLVVENLANPADLQVSGILEHNLASTDC--------WAIYGVEGGK-KPLVLDFGDVYEGELYQRRSFVIVNHASIPLEFQLSSSLL---ASELNFSLSSATLKQFKFVHVEANTRLQKPPAKVLRGFEQELPTSEPCQDAEAVLVRERLSITCRLVKDFQQ 495
+ L F+ +GV+ST+LVVEN NPAD++ + +A + + V+G + + + +D ++Y Y+ +SFVI+N AS+ +EF LSS+L ++ELNFSL +++LK+F V V+A + ++ + ++EL + C + A + + CRLVKD+Q+
Sbjct: 3192 VKLSFSTKAMGVYSTYLVVENFDNPADIKTVHLSMEVVALKNARPEAPLVPFFDVLVQGNRAEGVAIDMAEIYYNFWYRNQSFVILNEASVAMEFLLSSTLDHNDSTELNFSLENSSLKRFSSVTVDAKSSIRLWIHFCIAAPKEELLMEDVCDELRATIF-----VNCRLVKDYQR 3363
BLAST of mRNA_H-elongata_contig15939.3831.1 vs. uniprot
Match: A0A7S4PAK4_GUITH (Hypothetical protein n=2 Tax=Guillardia theta TaxID=55529 RepID=A0A7S4PAK4_GUITH) HSP 1 Score: 68.6 bits (166), Expect = 2.330e-10 Identity = 57/196 (29.08%), Postives = 100/196 (51.02%), Query Frame = 1
Query: 22 SRVGVFSTFLVVENLANPAD---LQVSGIL-------EHNLASTDCWAIY-------------GVEGGKKPLVLDFGDVYEGELYQRRSFVIVNHASIPLEFQLSSSL---LASELNFSLSSATLKQFKFVHVEANTRLQKPPAKVL---RGFEQELPTSEPCQDAEAVLVRE------RLSITCRLVKDFQQEIQ 504
SR+GV+ST++ ++NL NP D +QVS + +H ++++ + G++ KP ++ G V+ G+LY+ RSF+I N + +PL+F +SS++ A+E+NFS + LK + + ++ T ++V R Q S +DAE L + + + CRLVKD Q+ I+
Sbjct: 433 SRMGVYSTYMWIDNLLNPLDRKTIQVSMEVVGNHKTPQHGTSTSESSPWFSILTSGFGDEREDGMKDSAKPPCINLGHVFYGQLYRSRSFLIRNDSEMPLDFTISSNVDSHSATEVNFSSTHHILKSLRLLSLQPQTT-----SRVFVFYRPGRQSANNSTVVEDAEDGLGNDGTGESFEVYVRCRLVKDHQRVIR 623 The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig15939.3831.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 20
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-elongata_contig15939.3831.1 >prot_H-elongata_contig15939.3831.1 ID=prot_H-elongata_contig15939.3831.1|Name=mRNA_H-elongata_contig15939.3831.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=169bp ITLYFNRSRVGVFSTFLVVENLANPADLQVSGILEHNLASTDCWAIYGVEback to top mRNA from alignment at H-elongata_contig15939:6000..7090- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-elongata_contig15939.3831.1 ID=mRNA_H-elongata_contig15939.3831.1|Name=mRNA_H-elongata_contig15939.3831.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=1091bp|location=Sequence derived from alignment at H-elongata_contig15939:6000..7090- (Himanthalia elongata Himel1 dioecious)back to top Coding sequence (CDS) from alignment at H-elongata_contig15939:6000..7090- >mRNA_H-elongata_contig15939.3831.1 ID=mRNA_H-elongata_contig15939.3831.1|Name=mRNA_H-elongata_contig15939.3831.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=1014bp|location=Sequence derived from alignment at H-elongata_contig15939:6000..7090- (Himanthalia elongata Himel1 dioecious)back to top |