mRNA_H-elongata_contig159040.3816.1 (mRNA) Himanthalia elongata Himel1 dioecious
|
Overview
Homology
BLAST of mRNA_H-elongata_contig159040.3816.1 vs. uniprot
Match: A0A6H5KSA7_9PHAE (Dimer_Tnp_hAT domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KSA7_9PHAE) HSP 1 Score: 111 bits (277), Expect = 6.980e-30 Identity = 49/63 (77.78%), Postives = 54/63 (85.71%), Query Frame = 1
Query: 1 DVLPWWRQRGRKTFPCLSPVAQQVFGNQASGSQVERDFSGCGILLAPNRSCIDTYWVEMVMFL 189
++LPWWRQ GRKTFP L+PVAQQVFGNQA +QVERDFSGC LL NRS +DTYWVEMVMFL
Sbjct: 29 EILPWWRQTGRKTFPYLAPVAQQVFGNQAGAAQVERDFSGCANLLTRNRSRMDTYWVEMVMFL 91
BLAST of mRNA_H-elongata_contig159040.3816.1 vs. uniprot
Match: A0A6H5JZQ5_9PHAE (Dimer_Tnp_hAT domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JZQ5_9PHAE) HSP 1 Score: 108 bits (269), Expect = 5.070e-27 Identity = 48/63 (76.19%), Postives = 56/63 (88.89%), Query Frame = 1
Query: 1 DVLPWWRQRGRKTFPCLSPVAQQVFGNQASGSQVERDFSGCGILLAPNRSCIDTYWVEMVMFL 189
+VLPWW++ G+ FP L+PVAQQVFGNQA+ SQVERDFSG GILLAPNRS +DTYWVE+VMFL
Sbjct: 191 EVLPWWKRTGKNIFPHLAPVAQQVFGNQAAVSQVERDFSGVGILLAPNRSRMDTYWVEIVMFL 253
BLAST of mRNA_H-elongata_contig159040.3816.1 vs. uniprot
Match: A0A6H5JVT2_9PHAE (Dimer_Tnp_hAT domain-containing protein n=3 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JVT2_9PHAE) HSP 1 Score: 103 bits (258), Expect = 3.560e-26 Identity = 47/63 (74.60%), Postives = 50/63 (79.37%), Query Frame = 1
Query: 1 DVLPWWRQRGRKTFPCLSPVAQQVFGNQASGSQVERDFSGCGILLAPNRSCIDTYWVEMVMFL 189
+VLPWWR GRK FP L+PVAQQV GNQA +QVERDFS C LL NRS IDTYWVEMVMFL
Sbjct: 104 EVLPWWRNTGRKMFPYLAPVAQQVLGNQAGAAQVERDFSSCANLLTRNRSRIDTYWVEMVMFL 166
BLAST of mRNA_H-elongata_contig159040.3816.1 vs. uniprot
Match: A0A6H5KZ46_9PHAE (Dimer_Tnp_hAT domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KZ46_9PHAE) HSP 1 Score: 108 bits (269), Expect = 6.030e-26 Identity = 48/63 (76.19%), Postives = 51/63 (80.95%), Query Frame = 1
Query: 1 DVLPWWRQRGRKTFPCLSPVAQQVFGNQASGSQVERDFSGCGILLAPNRSCIDTYWVEMVMFL 189
+VLPWWR GRK FPCL+PVAQQV GNQA +QVERDFS C LL NRS IDTYWVEMVMFL
Sbjct: 502 EVLPWWRNTGRKMFPCLAPVAQQVLGNQAGAAQVERDFSSCANLLTRNRSRIDTYWVEMVMFL 564
BLAST of mRNA_H-elongata_contig159040.3816.1 vs. uniprot
Match: A0A6H5K8W6_9PHAE (Dimer_Tnp_hAT domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K8W6_9PHAE) HSP 1 Score: 93.6 bits (231), Expect = 7.860e-21 Identity = 40/63 (63.49%), Postives = 48/63 (76.19%), Query Frame = 1
Query: 1 DVLPWWRQRGRKTFPCLSPVAQQVFGNQASGSQVERDFSGCGILLAPNRSCIDTYWVEMVMFL 189
+VL +W + G+ FP L VAQQ FGNQAS + VERDFSGCG+ + PNRS +D YWVEMVMFL
Sbjct: 389 EVLSYWGRTGKHAFPSLKHVAQQTFGNQASAAPVERDFSGCGLFMVPNRSRVDEYWVEMVMFL 451
BLAST of mRNA_H-elongata_contig159040.3816.1 vs. uniprot
Match: A0A6H5JJJ9_9PHAE (Dimer_Tnp_hAT domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JJJ9_9PHAE) HSP 1 Score: 90.5 bits (223), Expect = 1.080e-19 Identity = 39/63 (61.90%), Postives = 47/63 (74.60%), Query Frame = 1
Query: 1 DVLPWWRQRGRKTFPCLSPVAQQVFGNQASGSQVERDFSGCGILLAPNRSCIDTYWVEMVMFL 189
+VL +W GR +FP L VAQQ FG+Q S + VERDFSGCG+ L PNRS ++ YWVEMVMFL
Sbjct: 731 EVLSYWATTGRHSFPALKHVAQQTFGSQPSAAPVERDFSGCGLFLVPNRSRVEEYWVEMVMFL 793
BLAST of mRNA_H-elongata_contig159040.3816.1 vs. uniprot
Match: A0A6H5KP16_9PHAE (Dimer_Tnp_hAT domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KP16_9PHAE) HSP 1 Score: 80.5 bits (197), Expect = 3.290e-18 Identity = 38/50 (76.00%), Postives = 40/50 (80.00%), Query Frame = 1
Query: 40 FPCLSPVAQQVFGNQASGSQVERDFSGCGILLAPNRSCIDTYWVEMVMFL 189
FP L+PVAQQV GNQA +QVERDFS C LL NRS IDTYWVEMVMFL
Sbjct: 2 FPYLAPVAQQVLGNQAGAAQVERDFSSCANLLTRNRSRIDTYWVEMVMFL 51
BLAST of mRNA_H-elongata_contig159040.3816.1 vs. uniprot
Match: A0A6H5KBM2_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KBM2_9PHAE) HSP 1 Score: 68.2 bits (165), Expect = 5.770e-12 Identity = 33/50 (66.00%), Postives = 35/50 (70.00%), Query Frame = 1
Query: 40 FPCLSPVAQQVFGNQASGSQVERDFSGCGILLAPNRSCIDTYWVEMVMFL 189
F L A +V GNQA +QVERDFS C LL NRS IDTYWVEMVMFL
Sbjct: 218 FQALYMTAGEVLGNQAGAAQVERDFSSCANLLTRNRSRIDTYWVEMVMFL 267
BLAST of mRNA_H-elongata_contig159040.3816.1 vs. uniprot
Match: A0A0P1AKL2_PLAHL (Ribonuclease H-like domain n=1 Tax=Plasmopara halstedii TaxID=4781 RepID=A0A0P1AKL2_PLAHL) HSP 1 Score: 61.6 bits (148), Expect = 2.330e-10 Identity = 29/63 (46.03%), Postives = 43/63 (68.25%), Query Frame = 1
Query: 1 DVLPWWRQRGRKTFPCLSPVAQQVFGNQASGSQVERDFSGCGILLAPNRSCIDTYWVEMVMFL 189
DVL + + + FP L+ VA+ +FGN AS + +ERDF G+LL P R+ +DT+ VEM++FL
Sbjct: 9 DVLDGFCIKHQGRFPHLAAVARCIFGNSASAAGIERDFEIAGVLLNPRRTNLDTFVVEMILFL 71
BLAST of mRNA_H-elongata_contig159040.3816.1 vs. uniprot
Match: A0A0P1AQK6_PLAHL (Ribonuclease H-like domain n=1 Tax=Plasmopara halstedii TaxID=4781 RepID=A0A0P1AQK6_PLAHL) HSP 1 Score: 60.1 bits (144), Expect = 5.220e-9 Identity = 31/65 (47.69%), Postives = 43/65 (66.15%), Query Frame = 1
Query: 1 DVLP--WWRQRGRKTFPCLSPVAQQVFGNQASGSQVERDFSGCGILLAPNRSCIDTYWVEMVMFL 189
DVL W + +GR FP L+ VA+ FGN A + +ERDF G+LL P R+ +DT+ VEM++FL
Sbjct: 232 DVLDGFWIKHQGR--FPRLAAVARYTFGNSALTAGIERDFGIAGVLLNPRRNNLDTFVVEMILFL 294 The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig159040.3816.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 14
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-elongata_contig159040.3816.1 >prot_H-elongata_contig159040.3816.1 ID=prot_H-elongata_contig159040.3816.1|Name=mRNA_H-elongata_contig159040.3816.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=64bp DVLPWWRQRGRKTFPCLSPVAQQVFGNQASGSQVERDFSGCGILLAPNRSback to top mRNA from alignment at H-elongata_contig159040:205..396- Legend: CDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-elongata_contig159040.3816.1 ID=mRNA_H-elongata_contig159040.3816.1|Name=mRNA_H-elongata_contig159040.3816.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=192bp|location=Sequence derived from alignment at H-elongata_contig159040:205..396- (Himanthalia elongata Himel1 dioecious)back to top Coding sequence (CDS) from alignment at H-elongata_contig159040:205..396- >mRNA_H-elongata_contig159040.3816.1 ID=mRNA_H-elongata_contig159040.3816.1|Name=mRNA_H-elongata_contig159040.3816.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=384bp|location=Sequence derived from alignment at H-elongata_contig159040:205..396- (Himanthalia elongata Himel1 dioecious)back to top |