mRNA_H-elongata_contig15880.3806.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig15880.3806.1
Unique NamemRNA_H-elongata_contig15880.3806.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig15880.3806.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig15880contigH-elongata_contig15880:5998..7249 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score88.6
Seed ortholog evalue1.6e-15
Seed eggNOG ortholog2880.D7G112
KEGG rclassRC00561,RC00839,RC02139
KEGG koko:K00461
KEGG ReactionR01595,R03058,R08527
KEGG Pathwayko00590,ko01100,ko04664,ko04726,ko04913,ko05145,map00590,map01100,map04664,map04726,map04913,map05145
EggNOG free text desc.oxidoreductase activity, acting on single donors with incorporation of molecular oxygen, incorporation of two atoms of oxygen
EggNOG OGs28IFU@1,2QQSP@2759
EC1.13.11.34
COG Functional cat.I
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko01000
Hectar predicted targeting categoryother localisation
Exons3
Model size259
Cds size258
Stop0
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig15880.3806.1prot_H-elongata_contig15880.3806.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig15880 5999..7249 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929935.4409242-CDS-H-elongata_contig15880:5998..60811622929935.4409242-CDS-H-elongata_contig15880:5998..6081Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig15880 5999..6081 -
1691679214.1173306-CDS-H-elongata_contig15880:5998..60811691679214.1173306-CDS-H-elongata_contig15880:5998..6081Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig15880 5999..6081 -
1622929935.4726999-CDS-H-elongata_contig15880:6515..66241622929935.4726999-CDS-H-elongata_contig15880:6515..6624Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig15880 6516..6624 -
1691679214.128952-CDS-H-elongata_contig15880:6515..66241691679214.128952-CDS-H-elongata_contig15880:6515..6624Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig15880 6516..6624 -
1622929935.486472-CDS-H-elongata_contig15880:7183..72491622929935.486472-CDS-H-elongata_contig15880:7183..7249Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig15880 7184..7249 -
1691679214.1362104-CDS-H-elongata_contig15880:7183..72491691679214.1362104-CDS-H-elongata_contig15880:7183..7249Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig15880 7184..7249 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig15880.3806.1

>prot_H-elongata_contig15880.3806.1 ID=prot_H-elongata_contig15880.3806.1|Name=mRNA_H-elongata_contig15880.3806.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=86bp
DGIASAIANYANSVTNVTDKDRATDISDYEALHGFPVQRPESVFDYDDDD
VFVRYRLQGVNPITIKKCTAETRAKLKALDFDPAYE
back to top

mRNA from alignment at H-elongata_contig15880:5998..7249-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig15880.3806.1 ID=mRNA_H-elongata_contig15880.3806.1|Name=mRNA_H-elongata_contig15880.3806.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=1252bp|location=Sequence derived from alignment at H-elongata_contig15880:5998..7249- (Himanthalia elongata Himel1 dioecious)
GACGGAATTGCATCAGCAATTGCCAACTACGCGAACAGCGTAACAAATGT
CACAGACAAAGATAGGGTGGGTTATCATCAAAAAGAGTAAGCTATGAGAA
GTTTTGAAGAACTTCCCCTTGATCTCTTTCAATATCGTGTGGTAAGAGGT
ATCTAAATCCCCTGATATTTCACTTTGAACAAGAAGGCGTACGACATGCA
CACCACACGCACCCAATAACTAATATATGATTACATGAGGGCGCCGGACG
CTCGTCGCCTATTTTCATGGTGTGCACGCGCCTCGGGTATGTTACGATAA
GGCAACCGAATTCGTAGTTTTTGAAGGATGTGCCTGTTACCGTCGGTAAC
GCATTACCTTTGAACCACGCACACCCCGGAGGTGACATATCCACCCGGGG
TTGTGTGTTATCGAGGGTGCGTGTGGCACTCAAGGTAGCCCCAATAACCA
CTTGTTTTGTGTCCTTTCCGGTGGCTTGATGAAACATGGACAAGAACTTT
CACCCCCGGGGCATGCTATCTAGAGGGATTGAGCATCATGCGCCACCTCC
GGGACTCCTACTACATGCGTCACACCGTCCTCGTCTGTCTGTTCGGTGTG
ACTGCTCCTCATCTGCCATCCACAGGCAACCGATATAAGCGACTACGAAG
CTCTACATGGCTTCCCCGTGCAGAGGCCCGAGTCCGTATTCGACTACGAT
GACGACGATGTGTTTGTTCGCTACCGCCTGCAGGGTAAAGAAAACCTCAT
ACATCCCCCCACATTTCGCCGCTTGAGCCGAGAGAGAGAAAGAGAGTACC
AGGGGTCAAATCCATATGGCATCTTGGCTAAGACTACACAACAACAGGGT
AGATTTCCGTGAAGAGCCGCCTAAGAAAATAATTTCGTTGGATAAGGGCA
TGTAGGTATGTTGTTCTCGCCTTAAGCGTGTCACAGTAATCGATTTACAG
ATTAGTTTACACTTTCATTATGTAACATTAGTATATTGTTTAACTGTAGG
AGAGTCGTTCTCCTTCTCGGTTCTAGACCTACAGTTCCCTGCATCTTGCA
AACATCTATGGCTTTCATTTTGTTCAATGATATCTTTATAGTTGTTCGCA
CGTCATTTGACAGCGAAACGAAAGATTTCGTACGCCGTTTTCCCACGCTG
CCGATGAACGGGATACAGGGGTCAACCCGATTACTATTAAGAAATGCACG
GCAGAGACGCGAGCAAAGCTGAAGGCCCTCGACTTTGACCCCGCATACGA
GG
back to top

Coding sequence (CDS) from alignment at H-elongata_contig15880:5998..7249-

>mRNA_H-elongata_contig15880.3806.1 ID=mRNA_H-elongata_contig15880.3806.1|Name=mRNA_H-elongata_contig15880.3806.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=516bp|location=Sequence derived from alignment at H-elongata_contig15880:5998..7249- (Himanthalia elongata Himel1 dioecious)
GACGGAATTGCATCAGCAATTGCCAACTACGCGAACAGCGTAACAAATGT
CACAGACAAAGATAGGGACGGAATTGCATCAGCAATTGCCAACTACGCGA
ACAGCGTAACAAATGTCACAGACAAAGATAGGGCAACCGATATAAGCGAC
TACGAAGCTCTACATGGCTTCCCCGTGCAGAGGCCCGAGTCCGTATTCGA
CTACGATGACGACGATGTGTTTGTTCGCTACCGCCTGCAGGGCAACCGAT
ATAAGCGACTACGAAGCTCTACATGGCTTCCCCGTGCAGAGGCCCGAGTC
CGTATTCGACTACGATGACGACGATGTGTTTGTTCGCTACCGCCTGCAGG
GGGTCAACCCGATTACTATTAAGAAATGCACGGCAGAGACGCGAGCAAAG
CTGAAGGCCCTCGACTTTGACCCCGCATACGAGGGGTCAACCCGATTACT
ATTAAGAAATGCACGGCAGAGACGCGAGCAAAGCTGAAGGCCCTCGACTT
TGACCCCGCATACGAG
back to top