mRNA_H-elongata_contig15839.3786.1 (mRNA) Himanthalia elongata Himel1 dioecious
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Overview
Homology
BLAST of mRNA_H-elongata_contig15839.3786.1 vs. uniprot
Match: A0A6H5JFY8_9PHAE (DUF1995 domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5JFY8_9PHAE) HSP 1 Score: 354 bits (909), Expect = 2.530e-116 Identity = 176/236 (74.58%), Postives = 200/236 (84.75%), Query Frame = 1
Query: 1 SGKDPYLTLRTQTAEATQAAISAGITLIELEFPPVRGKLDISLGETLDANRVFARELARTFSARMGQELWLVFPDDAEATLARETYGGTTFRVVSIQSAIRDLKDDNCQLQIVVNPGFNVEEWIVLDKLARPSVPMVMLNGGLDRLRGGYYPRIFYPGLYDATKRFLKNFETVYYLKALPGGWIFRKAPEDWQIISMSQLGNKQGRQAVESRVLESTADRPDYNRALKVVQAAAQQ 708
SGKDPY +R QTAEATQ AI+AGI LIELEFPPVRGKLDISLGETLDANR FARELAR+FSARMG+ LWL A LA+ TYGGTTFRVV I SAI+DLKD+ CQ+QIVVNPGF+V EWIVLD L RP VPMVMLNG LD+LRGGYYPRIF+PGLY+A +RFLK FETVYYLKALPGGWIFR+APEDWQ++S +Q K+G++A ES+VL ST DRPDYN A+K VQAA ++
Sbjct: 143 SGKDPYAAVRKQTAEATQDAINAGINLIELEFPPVRGKLDISLGETLDANRSFARELARSFSARMGKALWL-------AELAQNTYGGTTFRVVGINSAIKDLKDEECQMQIVVNPGFDVNEWIVLDSLVRPDVPMVMLNGNLDKLRGGYYPRIFFPGLYNAKERFLKKFETVYYLKALPGGWIFRRAPEDWQVVSAAQ-SEKRGQRAAESKVLSSTPDRPDYNTAVKTVQAAGRE 370
BLAST of mRNA_H-elongata_contig15839.3786.1 vs. uniprot
Match: W7TLD5_9STRA (DUF1995 domain-containing protein n=1 Tax=Nannochloropsis gaditana TaxID=72520 RepID=W7TLD5_9STRA) HSP 1 Score: 232 bits (592), Expect = 1.990e-69 Identity = 120/260 (46.15%), Postives = 173/260 (66.54%), Query Frame = 1
Query: 4 GKDPYLTLRTQTAEATQAAISAGITLIELEFPPVRGKLDISLGETLDANRVFARELARTFSARMGQELWLVFPDDAEATLARETYGGTTFRVVSIQSAIRDLKDDNCQLQIVVNPGFNVEEWIVLDKLARPSVPMVMLNGGLDRLRGGYYPRIFYPGLYDATKRFLKNFETVYYLKALPGGWIFRKAPEDWQ-IISMSQL--------GNKQGRQAVESRVLESTADRPDYN--------RALKVVQAAAQQQRAQSKES 732
G Y +R Q EA QA + AG +E+EFP G++D+SLGE LD +R + RE R F+ + G +LW++FPD EATLA + +GG FR++ I +A++ KD+ C+LQI V PGFNV+E+I L+K+ RP VPM+++NG LDR+RGGYYPRIFYPGLY+ +R L+ FE VYYLK GG+IFRK PE+WQ +++ L G+K GR+ V ++V+ ++ +RP YN +L + +AA + Q A +E+
Sbjct: 64 GSSFYAEVRKQATEAVQAGLKAGFEQMEIEFPISPGRIDVSLGEFLDDSREWTREFVRPFTPK-GAKLWVIFPDGKEATLAGKRWGGVNFRIMGIDTAMKASKDEPCELQIAVTPGFNVQEYINLEKVRRPGVPMIVVNGNLDRIRGGYYPRIFYPGLYNVKERMLQYFEPVYYLKPAQGGFIFRKFPEEWQQVLAYYDLQPGTGRGRGDK-GRKEVLTKVVATSEERPAYNDVVNALKKESLSMARAAQEAQEAAEREA 321
BLAST of mRNA_H-elongata_contig15839.3786.1 vs. uniprot
Match: A0A836CP02_9STRA (DUF1995 domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CP02_9STRA) HSP 1 Score: 213 bits (543), Expect = 1.750e-63 Identity = 114/223 (51.12%), Postives = 150/223 (67.26%), Query Frame = 1
Query: 103 VRGKLDISLGETLDANRVFARELARTFSARMGQELWLVFPDDAEATLARETY-----GGTTFRVVSIQSAI--RDLKDDNCQLQIVVNPGFNVEEWIVLDKL------------ARPSVPMVMLNGGLDRLRGGYYPRIFYPGLYDATKRFLKNFETVYYLKALPGGWIFRKAPEDWQIISMSQLGNKQGRQAVESRVLESTADRPDYNRALKVVQAAAQQQR 714
++GKLDISLGETLDANR FAREL R FSA+MG+ LW VF D EA LA + + G FRV SI+ A+ R D C LQ+VV PGFN++EWI LD L A MV+LNG LD++RGGYYP++ YPGL+ A RF+KNFE VYYLKALP GW+FR+ PEDWQ+I ++ G+ + VL++++ RP+YN A K+++AAA +++
Sbjct: 1 MQGKLDISLGETLDANRGFARELMRAFSAKMGKALWAVFADPGEAKLAAKAFTGGASGSLPFRVTSIKEALGKRAAADGGCDLQLVVQPGFNIDEWIQLDTLYAAGAKARQAAGAAGQPSMVVLNGSLDKVRGGYYPKLVYPGLHAAKDRFIKNFEPVYYLKALPEGWLFRRYPEDWQVI-YAERGS-------DPVVLQTSSTRPEYNNAAKLIKAAALERQ 215
BLAST of mRNA_H-elongata_contig15839.3786.1 vs. uniprot
Match: A0A4D9D5M4_9STRA (DUF1995 domain-containing protein n=1 Tax=Nannochloropsis salina CCMP1776 TaxID=1027361 RepID=A0A4D9D5M4_9STRA) HSP 1 Score: 213 bits (543), Expect = 2.560e-63 Identity = 109/234 (46.58%), Postives = 159/234 (67.95%), Query Frame = 1
Query: 82 IELEFPPVRGKLDISLGETLDANRVFARELARTFSARMGQELWLVFPDDAEATLARETYGGTTFRVVSIQSAIRDLKDDNCQLQIVVNPGFNVEEWIVLDKLARPSVPMVMLNGGLDRLRGGYYPRIFYPGLYDATKRFLKNFETVYYLKALPGGWIFRKAPEDWQ-IISMSQL--------GNKQGRQAVESRVLESTADRPDYN--------RALKVVQAAAQQQRAQSKES 732
+E+EFP G++D+SLGE LD +R + RE R F+ + G +LW++FPD EATLA + +GG FR++ I +A++ KD+ C+LQI V PGFNV+E+I L+K+ RP VPM+++NG LDR+RGGYYPRIFYPGLY +R L+ FE VYYLK GG++FRK PE+WQ +++ L G+K GR+ V ++V+ + +RP YN +L + +AA + Q A +E+
Sbjct: 1 MEIEFPISPGRIDVSLGEFLDDSREWTREFVRPFTPK-GAKLWVIFPDGKEATLAGKRWGGVNFRIMGIDTAMKASKDEACELQIAVTPGFNVQEYINLEKVRRPGVPMIVVNGNLDRIRGGYYPRIFYPGLYKVKERMLQYFEPVYYLKPAQGGFLFRKFPEEWQQVLAYYDLQPGAGRGRGDK-GRKQVLTKVVATCEERPAYNDVVNALKKESLSMARAAQEAQEAAEREA 232
BLAST of mRNA_H-elongata_contig15839.3786.1 vs. uniprot
Match: M2Y6Q8_GALSU (DUF1995 domain-containing protein n=1 Tax=Galdieria sulphuraria TaxID=130081 RepID=M2Y6Q8_GALSU) HSP 1 Score: 149 bits (375), Expect = 4.510e-38 Identity = 72/182 (39.56%), Postives = 109/182 (59.89%), Query Frame = 1
Query: 43 EATQAAISAGITLIELEFPPVRGKLDISLGETLDANRVFARELARTFSARMGQ-ELWLVFPDDAEATLARETYGGTTFRVVSIQSAIRDLKDDNCQLQIVVNPGFNVEEWIVLDKLARPSVPMVMLNGGLDRLRGGYYPRIFYPGLYDATKRFLKNFETVYYLKALPGGWIFRKAPEDWQII 585
E+ ++AI G+ L+E++FPP++ +L + +DANR FA+ + + F G ++VFPDDAE+ LARE T V I S RD+ + L +++NPGF V+EW +++ VP+++ N LD+LRGGYYPR YP LY + L FE VYY++ G + R+ P WQI+
Sbjct: 61 ESCKSAICDGLKLLEVQFPPLKNIGSAALNQVMDANRTFAKSVVQRFPHVSGNGTTFVVFPDDAESKLAREDRDFRTLDSVFITSLQRDIDLQDASLVVILNPGFQVQEWFEVERFCNYQVPVILFNADLDKLRGGYYPRFLYPKLYATKDKCLTKFEPVYYVRFFVNGALIRRYPNPWQIV 242
BLAST of mRNA_H-elongata_contig15839.3786.1 vs. uniprot
Match: A0A5J4Z109_PORPP (Protein LOW PSII ACCUMULATION 3, chloroplastic n=1 Tax=Porphyridium purpureum TaxID=35688 RepID=A0A5J4Z109_PORPP) HSP 1 Score: 147 bits (370), Expect = 5.300e-37 Identity = 98/250 (39.20%), Postives = 139/250 (55.60%), Query Frame = 1
Query: 16 YLTLRTQTAEATQAAISAGITLIELEFPPVRGKLDISLGETLDANRVFARELARTFSA-RMGQELWLVFPDDAEATLARETYGGTT---FRVVSIQSAI-----RDLKDDNCQ-LQIVVNPGFNVEEWIVLDKL--ARPSVPMVMLNGGLDRLRGGYYPRIFYPGLYDATKRFLKNFETVYYLKALPGGW--IFRKAPEDWQIISMSQLGNKQGRQAVESRVLESTADRPDYNRALKVVQAAAQQQRAQS 723
Y L Q+ EA +AA+ + +ELEFP +R +L + DANR AR LA +A + + LVFPD EA LA + +G +T F V S+ +A R+ + + L +VVNPGFN+EEW+ L+ L PS P++++NGG+DR+R GYYPR+FYP L+ RFL FE V++ K G ++RK P DWQ + + G R+L A RP+Y KVV+ Q RA+S
Sbjct: 62 YPQLYVQSLEAIRAALKEKVQFLELEFPALRNMATSALNQIADANREHARALATALAADKDAGTVCLVFPDAKEAALATKVFGESTVLPFEVGSLAAAATMQAEREQPAGSTRTLFVVVNPGFNIEEWLQLESLHLGHPSDPILVINGGMDRVRSGYYPRLFYPKLHQTKDRFLCKFEPVFFYKPFGSGLGTLYRKFPADWQTLFHVKDGGGY-------RLLSQDAQRPEY----KVVE---QNFRAES 297
BLAST of mRNA_H-elongata_contig15839.3786.1 vs. uniprot
Match: A0A7S0G1A8_9RHOD (Hypothetical protein n=1 Tax=Rhodosorus marinus TaxID=101924 RepID=A0A7S0G1A8_9RHOD) HSP 1 Score: 143 bits (361), Expect = 1.020e-36 Identity = 82/224 (36.61%), Postives = 126/224 (56.25%), Query Frame = 1
Query: 79 LIELEFPPVR-GKLDISLGETLDANRVFARELARTFSARMGQELWLVFPDDAEATLARETY----GGTTFRVVSIQSAIRDLKDDNCQLQIVVNPGFNVEEWIVLDKLARPSVPMVMLNGGLDRLRGGYYPRIFYPGLYDATKRFLKNFETVYYLKALPG-GWIFRKAPEDWQIISMSQLGNKQGRQAVESRVLESTADRPDYNRALKVVQAAAQQQRAQSKES 732
L+E++FPP +L ET+DANR AREL R F+ L + FPD EA LA+ ++ G F + +I++A RD N +L V+NPGFN++E+I L+ +V++NG LDR+RGGYYPRIFYP L+ +R L+ F ++Y+ K+ P G + R P W++ S G E + L + +RP Y ++++ AA +R S ++
Sbjct: 2 LLEVQFPPTTTAAASAALNETMDANRRHARELIRGFTMEYSGRLSVAFPDKGEAVLAQRSWKVDEGEERFYISTIEAAPRD---PNAELFFVLNPGFNIDEYINLENFDDEKRTIVVINGELDRIRGGYYPRIFYPKLHKVAERSLRKFVSIYFFKSYPNRGTLLRAYPGPWRLFYTSAQG--------EIKCLIESEERPSYQEMERILRKAADDERLSSYDA 214
BLAST of mRNA_H-elongata_contig15839.3786.1 vs. uniprot
Match: A0A2V3IVF9_9FLOR (DUF1995 domain-containing protein n=1 Tax=Gracilariopsis chorda TaxID=448386 RepID=A0A2V3IVF9_9FLOR) HSP 1 Score: 142 bits (359), Expect = 2.170e-36 Identity = 74/186 (39.78%), Postives = 109/186 (58.60%), Query Frame = 1
Query: 58 AISAGITLIELEFPPVRGKLDISLGETLDANRVFARELARTFSARM-GQELWLVFPDDAEATLARETYGGTTFRVVSIQSAIRDLKDDNCQLQIVVNPGFNVEEWIVLDKLARPS--VPMVMLNGGLDRLRGGYYPRIFYPGLYDATKRFLKNFETVYYLKALP-GGWIFRKAPEDWQIISMSQLG 603
A+S+G LIEL+FPP+ +L E LDANR F R+L R+ + ++L ++FPD EA LAR+ YG F + I + + ++VNPGFN+ EWI + L +V +N D++RGGYYPR+FYPGL+ A + LK FE +YY+K+ GG + R+ PE W++ + G
Sbjct: 4 ALSSGKPLIELQFPPISNMATAALNELLDANRAFTRDLMRSLVPKYDAKDLRVLFPDVGEARLARDVYGDVPFGIGVIPKQQPEFVQ-RAGVAVIVNPGFNISEWINIQNLVSEDSKCTLVTVNADFDKVRGGYYPRLFYPGLHKARDKVLKRFEEIYYIKSFSNGGTLLRRFPEGWKLFYADKDG 188
BLAST of mRNA_H-elongata_contig15839.3786.1 vs. uniprot
Match: M1VKG6_CYAM1 (DUF1995 domain-containing protein n=1 Tax=Cyanidioschyzon merolae (strain NIES-3377 / 10D) TaxID=280699 RepID=M1VKG6_CYAM1) HSP 1 Score: 135 bits (341), Expect = 1.820e-33 Identity = 82/219 (37.44%), Postives = 119/219 (54.34%), Query Frame = 1
Query: 79 LIELEFPPVRGKLDISLGETLDANRVFARELARTFSARMGQELWLVFPDDAEATLARETYGGT--TFRVVSIQSAIRDLKDDNCQ---LQIVVNPGFNVEEWIVLDK--LARPSVPMVMLNGGLDRLRGGYYPRIFYPGLYDATKRFLKNFETVYYLKALPGGWIFRKAPEDWQIISMSQLGNKQGRQAVESRVLESTADRPDYNRALKVVQAAAQQQR 714
L E+ FP VR +L LDAN ARE+ + F+A + L LVFPD AEA +A + YG + TF + ++ R + L VV PGFN++EW+ L++ L P +V+LNG +DRLR YYP +FYP L KR+L+ FE +YYLK LP G +FR PE WQ + G E+ + +RP + + + + +++QR
Sbjct: 38 LYEVSFPAVRDTT-AALSRILDANTSHAREIIKPFAASFRKRLHLVFPDVAEAKIAEKVYGSSEHTFTLSALPLYERPAFLQQVEAPALVFVVQPGFNIDEWLQLERPALLYPDASIVVLNGNMDRLRSNYYPPLFYPRLTALRKRYLEQFEPIYYLKPLPNGLLFRVFPEPWQTFFCASPG--------EATRIAVDDERPTFPQTTQRLMELSREQR 247
BLAST of mRNA_H-elongata_contig15839.3786.1 vs. uniprot
Match: A0A7S0ZAT4_9RHOD (Hypothetical protein n=2 Tax=Timspurckia oligopyrenoides TaxID=708627 RepID=A0A7S0ZAT4_9RHOD) HSP 1 Score: 133 bits (334), Expect = 9.460e-32 Identity = 76/193 (39.38%), Postives = 109/193 (56.48%), Query Frame = 1
Query: 34 QTAEATQAAISAGITLIELEFPPVRGKLDISLGETLDANRVFARELARTFSARMGQELWLVFPDDAEATLARETYGGTTFRVVSIQSAIRDLKDDNCQLQIVVNPGFNVEEWIVLDKLARPSVPMVMLNGGLDRLRGGYYPRIFYPGLYDATKRFLKNFETVYYLKALPGGW--IFRKAPEDWQIISMSQLGN 606
Q A A+ AG+ L E++FP V +L + LDANR A L++ R + + FPD E LA+ + + + I S L D+ + +VV PGFNV+EW+ ++KL R P+++LNG +DR+RGGYYPRIFYPGL+ RFL FE +++LK G +FRK PE WQ + G+
Sbjct: 95 QVNAAISEALDAGMELAEVQFPAVPNIATAALNQLLDANRNHALVLSKALEKR--GSVRVAFPDAGETKLAKNAWKNESDNI-KISSIKAGLDSDSGKSILVVMPGFNVDEWLDMEKL-RIGPPIIVLNGEMDRVRGGYYPRIFYPGLHRVKDRFLNKFEPIFFLKQFGSGLGVLFRKYPEPWQTLFRDSDGS 283 The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig15839.3786.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-elongata_contig15839.3786.1 >prot_H-elongata_contig15839.3786.1 ID=prot_H-elongata_contig15839.3786.1|Name=mRNA_H-elongata_contig15839.3786.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=181bp MGQELWLVFPDDAEATLARETYGGTTFRVVSIQSAIRDLKDDNCQLQIVVback to top mRNA from alignment at H-elongata_contig15839:970..4615+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-elongata_contig15839.3786.1 ID=mRNA_H-elongata_contig15839.3786.1|Name=mRNA_H-elongata_contig15839.3786.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=3646bp|location=Sequence derived from alignment at H-elongata_contig15839:970..4615+ (Himanthalia elongata Himel1 dioecious)back to top Coding sequence (CDS) from alignment at H-elongata_contig15839:970..4615+ >mRNA_H-elongata_contig15839.3786.1 ID=mRNA_H-elongata_contig15839.3786.1|Name=mRNA_H-elongata_contig15839.3786.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=1086bp|location=Sequence derived from alignment at H-elongata_contig15839:970..4615+ (Himanthalia elongata Himel1 dioecious)back to top |