mRNA_H-elongata_contig1579.3763.1 (mRNA) Himanthalia elongata Himel1 dioecious
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Overview
Homology
BLAST of mRNA_H-elongata_contig1579.3763.1 vs. uniprot
Match: D7G8Q2_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7G8Q2_ECTSI) HSP 1 Score: 451 bits (1161), Expect = 2.400e-151 Identity = 218/277 (78.70%), Postives = 243/277 (87.73%), Query Frame = 1
Query: 13 VSDSEAWRRPIILPSEILNRPPSAECGVEWETEVSHRVWGCELLQEAGVLLRFSQVVMCTAQTLLQRFFYRISLTKIDAFSVAMACMLLAMKIEEDRRQPTALVLVFHRMFERRMGVEPSAAMSMEAMRMLRDEMFRVERHVLAGLGFGFYNIMDHPHKFILYYLRVLELNVEGDVSQRAWNYLNDSLRTDLSLRFRSEIIACAAIYMASRSLGIKLPDNPPWWILFNADIKAIGQICNTILALYRRPKIAFLEPLCERSVFRNGGPLRKGAVGKNI 843
+ D EAW R IILP +IL+ PPS E V+WETE SHR+WGCELLQEAGVLLR QVVMCTAQ LLQRFFYR LTK DAFSVAM CMLLAMKIEED RQP A+VLVFHRMFERR+GV+P+ + E++R+LRDEM RVE HVL LGFGFYNIMDHPHKFILYYLRVLEL++EGDVSQRAWNY+NDSLRTDLSLRFRSE+IACAAIYMASRSLGIKLPDNPPWW+LFNAD++ +G+ICNTILALY RPK+AFLEPLC+ SVFR GGPLR AV +NI
Sbjct: 55 IPDDEAWHRTIILPRDILDNPPSGEHEVDWETESSHRIWGCELLQEAGVLLRLPQVVMCTAQNLLQRFFYRKPLTKFDAFSVAMGCMLLAMKIEEDPRQPRAVVLVFHRMFERRIGVDPAIVIPPESLRVLRDEMLRVELHVLKELGFGFYNIMDHPHKFILYYLRVLELDIEGDVSQRAWNYVNDSLRTDLSLRFRSEVIACAAIYMASRSLGIKLPDNPPWWVLFNADMQEMGEICNTILALYHRPKVAFLEPLCDNSVFRRGGPLRIDAVVQNI 331
BLAST of mRNA_H-elongata_contig1579.3763.1 vs. uniprot
Match: A0A835YUR3_9STRA (Cyclin-like protein (Fragment) n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YUR3_9STRA) HSP 1 Score: 330 bits (845), Expect = 4.170e-106 Identity = 166/273 (60.81%), Postives = 204/273 (74.73%), Query Frame = 1
Query: 25 EAWRRPIILPSEILNRPPSAECGVEWETEVSHRVWGCELLQEAGVLLRFSQVVMCTAQTLLQRFFYRISLTKIDAFSVAMACMLLAMKIEE--DRRQPTALVLVFHRMFERRMGV-----EPSAAMSMEAMRMLRDEMFRVERHVLAGLGFGFYNIMDHPHKFILYYLRVLELNVEGDVSQRAWNYLNDSLRTDLSLRFRSEIIACAAIYMASRSLGIKLPDNPPWWILFNADIKAIGQICNTILALYRRPKIAFLEPLCERSVFRNGGPLRK 822
E W ++LP EIL PPS + GV+WETE HR WGCEL+QEAG+LLR QVVMCT QTLLQRF+YR SLTK DAFSVAM C+LLA K+EE + +V+VFHRM+ RR G+ E + E L+ EM RVER+VL LGFGFYNIMDHPHKFILYY+RVL +E +QR W+YLND+LRTDL LR+R+E+IACAAIYMA+R+L ++LP +PPWW LFNA++ IGQICN ILALY++PK+ +LEPL SVF GG +R+
Sbjct: 1 EPWHSVVLLPEEILANPPSKDHGVDWETETQHRAWGCELIQEAGILLRLPQVVMCTGQTLLQRFYYRKSLTKFDAFSVAMGCVLLAAKLEEAIGHTRVRDVVMVFHRMYLRRRGLPLEFLELGGTVYAE----LKTEMIRVERYVLKDLGFGFYNIMDHPHKFILYYVRVLGWELEA--TQRVWSYLNDALRTDLCLRYRAEVIACAAIYMAARALRLRLPQSPPWWRLFNAELPEIGQICNAILALYKKPKVVWLEPLHSGSVFAPGGAVRR 267
BLAST of mRNA_H-elongata_contig1579.3763.1 vs. uniprot
Match: A0A7S4D4U7_HETAK (Hypothetical protein (Fragment) n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S4D4U7_HETAK) HSP 1 Score: 277 bits (708), Expect = 1.350e-85 Identity = 140/263 (53.23%), Postives = 184/263 (69.96%), Query Frame = 1
Query: 25 EAWRRPIILPSEILNRPPSAECGVEWETEVSHRVWGCELLQEAGVLLRFSQVVMCTAQTLLQRFFYRISLTKIDAFSVAMACMLLAMKIEEDRRQPTALVLVFHRMFERRMGVEPSAAMSMEAMRML--RDEMFRVERHVLAGLGFGFYNIMDHPHKFILYYLRVLELNVEGDVSQRAWNYLNDSLRTDLSLRFRSEIIACAAIYMASRSLGIKLPDNPPWWILFNADIKAIGQICNTILALYRRPKIAFLEPLCERSVFRNG 807
E W LP+EIL+ PS + GV WE E RVWGCEL+QEAGVLLR QVVM T Q LLQRFFYR SL + DAF+VAM C+ L+ K+EE ++ ++ VFH + + R G EP + + A + + E+ ++ERHVL LGF FYNIMDHPHKFILYY++VL+ + ++QRAW+Y+NDSLRTDL LR + +IACAAIYMA+R L + LP +PPWW LF+A ++ + IC+ ILALY K ++EPL E +VF+ G
Sbjct: 33 EPWHMVQTLPAEILDNSPSKKDGVPWEQEYKFRVWGCELVQEAGVLLRLPQVVMATGQNLLQRFFYRRSLKRFDAFTVAMGCLFLSCKVEEKPKRLREILFVFHHISQVRRG-EPITPLELGAQTYMQWKSELIKMERHVLKELGFSFYNIMDHPHKFILYYIKVLDGS--SALAQRAWSYVNDSLRTDLCLRHGAAVIACAAIYMAARVLRVPLPRSPPWWELFSAQLRDVAAICDAILALYEMEKTPWMEPLSEANVFKRG 292
BLAST of mRNA_H-elongata_contig1579.3763.1 vs. uniprot
Match: W7U1X8_9STRA (Ania-6a type cyclin n=3 Tax=Monodopsidaceae TaxID=425072 RepID=W7U1X8_9STRA) HSP 1 Score: 252 bits (643), Expect = 2.240e-73 Identity = 137/285 (48.07%), Postives = 180/285 (63.16%), Query Frame = 1
Query: 10 DVSDSEAWRRPIILPSEILNRPPSAECGVEWETEVSHRVWGCELLQEAGVLLRFSQVVMCTAQTLLQRFFYRISLTK-------------------IDAFSVAMACMLLAMKIEEDRRQPTALVLVFHRMFERRMGVEPSAAMSMEAMRM--LRDEMFRVERHVLAGLGFGFYNIMDHPHKFILYYLRVLELNVEGDVSQRAWNYLNDSLRTDLSLRFRSEIIACAAIYMASRSLGIKLPDNPPWWILFNADIKAIGQICNTILALYRRPK-------IAFLEPL 780
DVS W ++LP +L PS GV E HR++GCEL+QEAG+LLR QVVM TAQTL RFFYR +LT DAF+VAM C+ LA K+EE R P ++ VFH M RR G+ PS + + ++R LR+ + +E++VL LGFGFY+IMDHPHKFILYY++ L+ ++QRAWNYLNDSLR D +RFR+E+IAC A+YMASR LG+KLPD+PPW+ LF A ++ + + N IL+LYR + +LEPL
Sbjct: 35 DVSVDGEWHEVVLLPRHVLRESPSRRLGVPEAVERRHRIFGCELIQEAGILLRQPQVVMATAQTLFHRFFYRRALTSERAQDVPEPGPGKSPRVFLFDAFTVAMGCVFLASKLEEKPRAPRDVLFVFHHMCRRRRGLGPSL-LEVTSVRYHDLREALLMIEKYVLKELGFGFYSIMDHPHKFILYYIKTLDGT--PTLAQRAWNYLNDSLRLDCCVRFRAELIACTALYMASRDLGVKLPDDPPWFALFGASLEEMRHVGNVILSLYREKDEEGEEAPLRWLEPL 316
BLAST of mRNA_H-elongata_contig1579.3763.1 vs. uniprot
Match: A0A3F2S4S2_9STRA (Uncharacterized protein n=3 Tax=Phytophthora kernoviae TaxID=325452 RepID=A0A3F2S4S2_9STRA) HSP 1 Score: 233 bits (595), Expect = 2.170e-69 Identity = 126/312 (40.38%), Postives = 186/312 (59.62%), Query Frame = 1
Query: 43 IILPSEILNRPPSAECGVEWETEVSHRVWGCELLQEAGVLLRFSQVVMCTAQTLLQRFFYRISLTKIDAFSVAMACMLLAMKIEEDRRQPTALVLVFHRMFERRMGVEPSAAMSMEAM-----RMLRDEMFRVERHVLAGLGFGFYNIMDHPHKFILYYLRVLELNVEGDVSQRAWNYLNDSLRTDLSLRFRSEIIACAAIYMASRSLGIKLPDNPPWWILFNADIKAIGQICNTILALYRRPKIAFLEPLCE-----------------RSVFRNGGPLRKGAVGKNIPGERVDGSSACLTLPEIDFALTK 912
++LP+ +L R PS++ G++ TE HR +GCEL+QEAGVLLR QVVM TAQTL QRF+YR SL + DAF VA++C+ LA K+EE ++ ++ VF+ M RR + + + R + VER VL +GF YN+ +HPHK++LYY++VL+ + ++QRAW Y+NDSLR+DL +R+ +++IAC+AI++ASR G+ LP+NPPW+ LF + + + + I+ LY++ KI +LEPL E SV + G P K GK I + + T D TK
Sbjct: 9 VVLPASVLTRSPSSQDGIDPSTEHQHRFFGCELIQEAGVLLRLPQVVMATAQTLFQRFYYRKSLRQFDAFRVAISCLFLAAKVEERPKRIKDVLTVFYAMLRRRKWKRTVVSQQLVDLDGATYSQWRMWLIMVERQVLIDMGFSVYNVTEHPHKYVLYYVKVLDGS--SQLAQRAWGYINDSLRSDLCVRYSAQVIACSAIFLASRYQGVALPENPPWYSLFGVNKQQLYAVSVAIMELYKQEKIEWLEPLTETNPFAVDDHPVEEQLIVESVVKTGAPNEKIEPGKEISPQEPSSEAHFGTSNNNDLQATK 318
BLAST of mRNA_H-elongata_contig1579.3763.1 vs. uniprot
Match: A0A3M6VK16_9STRA (Uncharacterized protein n=1 Tax=Peronospora effusa TaxID=542832 RepID=A0A3M6VK16_9STRA) HSP 1 Score: 232 bits (592), Expect = 1.040e-68 Identity = 122/289 (42.21%), Postives = 181/289 (62.63%), Query Frame = 1
Query: 43 IILPSEILNRPPSAECGVEWETEVSHRVWGCELLQEAGVLLRFSQVVMCTAQTLLQRFFYRISLTKIDAFSVAMACMLLAMKIEEDRRQPTALVLVFHRMFERRMGVEPSAAMSMEAMR-----MLRDEMFRVERHVLAGLGFGFYNIMDHPHKFILYYLRVLELNVEGDVSQRAWNYLNDSLRTDLSLRFRSEIIACAAIYMASRSLGIKLPDNPPWWILFNADIKAIGQICNTILALYRRPKIAFLEPLCERSVFR-NGGPLRKGAVGKNIPGERVDGSSACLTLPE 891
++LP+ L PS + G+ TE HR +GCEL+QEAG+LLR QVVM TAQTLL RF+YR SL + DAF VA++C+ LA K+EE ++ ++ VF+ MF RR + + + R + VER VL LGF YN+ +HPHK++LYY++VL N ++Q+AW Y+NDSLRTDL +RF++++IACAAI++ASR + LP++PPW+ LF+ + + + I+ LY++ K+ +LEPL E + F + P+ K G+ VD + LP+
Sbjct: 10 VVLPTSTLIHSPSRDNGIALNTEKLHRSFGCELIQEAGILLRLPQVVMATAQTLLHRFYYRKSLHQFDAFRVALSCLFLAAKVEEKPKRIHEVIGVFYAMFRRRKWKNTTVTQKLMDLNGPTFSQWRMWLIMVERQVLIDLGFSVYNVTEHPHKYVLYYVKVL--NGSSQLAQQAWGYINDSLRTDLCVRFKAQVIACAAIFLASRFQEVALPEDPPWYALFDVEKTQLYAVSIVIMELYKQEKLEWLEPLTEANPFAVDDCPVEKEVSGQEEESVAVDNKAETEILPQ 296
BLAST of mRNA_H-elongata_contig1579.3763.1 vs. uniprot
Match: A0A484EGW5_BRELC (Uncharacterized protein n=1 Tax=Bremia lactucae TaxID=4779 RepID=A0A484EGW5_BRELC) HSP 1 Score: 232 bits (592), Expect = 2.150e-68 Identity = 121/257 (47.08%), Postives = 171/257 (66.54%), Query Frame = 1
Query: 43 IILPSEILNRPPSAECGVEWETEVSHRVWGCELLQEAGVLLRFSQVVMCTAQTLLQRFFYRISLTKIDAFSVAMACMLLAMKIEEDRRQPTALVLVFHRMFERRMGVEPSAAMSM-----EAMRMLRDEMFRVERHVLAGLGFGFYNIMDHPHKFILYYLRVLELNVEGDVSQRAWNYLNDSLRTDLSLRFRSEIIACAAIYMASRSLGIKLPDNPPWWILFNADIKAIGQICNTILALYRRPKIAFLEPLCERSVF 798
++LP+ L+R PS E GV + EV HR +GCEL+QEAGVLLR QVVM TAQTLLQRF+YR SL + DAF VA +C+ LA K+EE+ + ++ VF+ MF RR + A + R + VER +L LGF Y++ +HPHK++LYY +VL+ + ++Q+AW Y+NDSLRTDL +R+++E+IACAAI++ASR GI LP NPPW+ LF+ + + + I LY++ K+ +LEPL E + F
Sbjct: 10 VVLPTSSLSRSPSNEDGVNPDIEVLHRFFGCELIQEAGVLLRLPQVVMATAQTLLQRFYYRKSLRQFDAFRVAFSCLFLAAKVEENPTRIKDVIGVFYAMFRRRKWQRSTVAQQLIDLDGTTFNQWRMWLIMVERQILIDLGFSIYSVTEHPHKYVLYYAKVLDGS--SALAQQAWGYINDSLRTDLCVRYKAEVIACAAIFLASRFQGIALPYNPPWYSLFDVEQAQLYAVSLVIAKLYKQEKLQWLEPLTEANPF 264
BLAST of mRNA_H-elongata_contig1579.3763.1 vs. uniprot
Match: A0A8K1CU74_PYTOL (Uncharacterized protein n=1 Tax=Pythium oligandrum TaxID=41045 RepID=A0A8K1CU74_PYTOL) HSP 1 Score: 239 bits (611), Expect = 2.550e-68 Identity = 131/289 (45.33%), Postives = 185/289 (64.01%), Query Frame = 1
Query: 43 IILPSEILNRPPSAECGVEWETEVSHRVWGCELLQEAGVLLRFSQVVMCTAQTLLQRFFYRISLTKIDAFSVAMACMLLAMKIEEDRRQPTALVLVFHRMFERRMG---------VEPSAAMSMEAMRMLRDEMFRVERHVLAGLGFGFYNIMDHPHKFILYYLRVLELNVEGDVSQRAWNYLNDSLRTDLSLRFRSEIIACAAIYMASRSLGIKLPDNPPWWILFNADIKAIGQICNTILALYRRPKIAFLEPLCERSVFR-----NGGP--LRKGAVGKNIPGERVD 861
++LP IL R PS + GV E HR WGCEL++EAG+LLR QVVM TAQT+LQRF+YR SL DAF VA+ C+ LA K+EE ++ +V VF+ ++ RR +EP + ++ + D + VER +L LGF Y IM+HPHK+ILYY+++L+ + ++Q+AW YLNDSLR DL +R+R+E+IACAAI++ASR L +KLP +PPW+ LF+ D A+ Q I+ LY R KI +L+PL E + F + P +R+ A N+P + VD
Sbjct: 9 VVLPEAILARSPSQQDGVSAHEERDHRFWGCELIEEAGILLRLPQVVMVTAQTMLQRFYYRKSLRDFDAFRVAIGCLFLAAKVEEQPKRMREVVSVFYAIYRRRKWGKTRMTQQLLEPES----DSYYLWCDWLIMVERQILIDLGFSLYTIMEHPHKYILYYIKILDGSKA--LAQKAWGYLNDSLRVDLCVRYRAEVIACAAIFLASRMLQVKLPMSPPWFELFDVDETALLQASTVIMELYTRKKIVWLDPLTEVNPFAIDDLPDAEPQAVRQSAAVDNVPEKPVD 291
BLAST of mRNA_H-elongata_contig1579.3763.1 vs. uniprot
Match: A0A225WJ87_9STRA (Cyclin-L1 n=1 Tax=Phytophthora megakarya TaxID=4795 RepID=A0A225WJ87_9STRA) HSP 1 Score: 229 bits (585), Expect = 4.760e-68 Identity = 123/290 (42.41%), Postives = 184/290 (63.45%), Query Frame = 1
Query: 43 IILPSEILNRPPSAECGVEWETEVSHRVWGCELLQEAGVLLRFSQVVMCTAQTLLQRFFYRISLTKIDAFSVAMACMLLAMKIEEDRRQPTALVLVFHRMFERRMGVEPSAAMSM-----EAMRMLRDEMFRVERHVLAGLGFGFYNIMDHPHKFILYYLRVLELNVEGDVSQRAWNYLNDSLRTDLSLRFRSEIIACAAIYMASRSLGIKLPDNPPWWILFNADIKAIGQICNTILALYRRPKIAFLEPLCERSVFR-NGGPLRKGAVGKNIPGERVDGSSACLTLPEI 894
++LP+ L R PS E G+ +TE HR +GCEL+QEAGVLLR QVV+ TAQTLL RF+YR SL + DAF VA++C+ LA K+EE ++ ++ VF+ M RR + + R + VER VL LGF YN+ +HPHK++LYY++VL+ + ++Q+AW Y+NDSLRTDL +R+++++IACAAI++ASR G+ LP+NPPW+ LF+ + + + I+ LY++ K+ +LEPL E + F + P+ + V P +++ S T EI
Sbjct: 8 VVLPASSLQRSPSLEDGISSDTERLHRSFGCELIQEAGVLLRLPQVVLATAQTLLHRFYYRKSLRQFDAFRVAVSCLFLAAKVEEKPKRIKDVLGVFYAMLRRRKWRRTTVTQQLVDVDGATFSQWRMWLIMVERQVLIDLGFSVYNVTEHPHKYVLYYVKVLDGS--STLAQQAWGYINDSLRTDLCVRYKAQVIACAAIFLASRFQGVALPENPPWYSLFDVEKTQLYAVSVAIMQLYKQEKVEWLEPLTETNPFAVDDHPVEEDEV----PAQQIPVDSKMETEKEI 291
BLAST of mRNA_H-elongata_contig1579.3763.1 vs. uniprot
Match: W2R3U0_PHYPN (Uncharacterized protein (Fragment) n=11 Tax=Phytophthora TaxID=4783 RepID=W2R3U0_PHYPN) HSP 1 Score: 232 bits (591), Expect = 5.970e-68 Identity = 119/257 (46.30%), Postives = 174/257 (67.70%), Query Frame = 1
Query: 43 IILPSEILNRPPSAECGVEWETEVSHRVWGCELLQEAGVLLRFSQVVMCTAQTLLQRFFYRISLTKIDAFSVAMACMLLAMKIEEDRRQPTALVLVFHRMFERRMGVEPSAAMSM-----EAMRMLRDEMFRVERHVLAGLGFGFYNIMDHPHKFILYYLRVLELNVEGDVSQRAWNYLNDSLRTDLSLRFRSEIIACAAIYMASRSLGIKLPDNPPWWILFNADIKAIGQICNTILALYRRPKIAFLEPLCERSVF 798
++LP+ L R PS E ++ + E HR +GCEL+QEAGVLLR QVVM TAQTLLQRF+YR SL + DAF VA++C+ LA K+EE ++ +V VF+ MF RR + + + R + VER VL LGF Y++ +HPHK++LYY++VL+ + ++Q+AW Y+NDSLRTDL +R+++++IACAAI++ASR G+ LP+NPPW++LF+ D + + I+ LY++ KI +LEPL E + F
Sbjct: 10 VVLPASSLARSPSLEDDIKPDIERLHRSFGCELIQEAGVLLRLPQVVMATAQTLLQRFYYRKSLRQFDAFRVAVSCLFLAAKVEEKPKRIKDVVGVFYAMFRRRKWQRSTVSQQLVDLDGATFSQWRMWLIMVERQVLIDLGFSIYSVTEHPHKYVLYYVKVLDGS--SALAQQAWGYINDSLRTDLCVRYKAQVIACAAIFLASRFQGVALPENPPWYLLFDVDKTQLYAVSVVIMELYKQEKIQWLEPLTETNPF 264 The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig1579.3763.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-elongata_contig1579.3763.1 >prot_H-elongata_contig1579.3763.1 ID=prot_H-elongata_contig1579.3763.1|Name=mRNA_H-elongata_contig1579.3763.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=492bp MSIDVSDSEAWRRPIILPSEILNRPPSAECGVEWETEVSHRVWGCELLQEback to top mRNA from alignment at H-elongata_contig1579:5751..13993- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-elongata_contig1579.3763.1 ID=mRNA_H-elongata_contig1579.3763.1|Name=mRNA_H-elongata_contig1579.3763.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=8243bp|location=Sequence derived from alignment at H-elongata_contig1579:5751..13993- (Himanthalia elongata Himel1 dioecious)back to top Coding sequence (CDS) from alignment at H-elongata_contig1579:5751..13993- >mRNA_H-elongata_contig1579.3763.1 ID=mRNA_H-elongata_contig1579.3763.1|Name=mRNA_H-elongata_contig1579.3763.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=2952bp|location=Sequence derived from alignment at H-elongata_contig1579:5751..13993- (Himanthalia elongata Himel1 dioecious)back to top |