mRNA_H-elongata_contig157322.3735.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig157322.3735.1
Unique NamemRNA_H-elongata_contig157322.3735.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
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BLAST of mRNA_H-elongata_contig157322.3735.1 vs. uniprot
Match: D7FW89_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FW89_ECTSI)

HSP 1 Score: 101 bits (251), Expect = 3.610e-23
Identity = 76/170 (44.71%), Postives = 91/170 (53.53%), Query Frame = 3 
Query:   66 MDLPRSSLLGRLEAFLPEMEKANRETEKLAEEGKLEIIDKKLEVASSDDQREQAXXXXXXXXXXXXXDGLPGA----AEGNAIPPRVVKLDFALGDFDDTPIAKMEEAKQDKEYYDARHVAADDQDRVNEGALKEAV--GSLILVPGARIESSGEASSQPKSRKPLIEEL 557
            M+LP SSLLGRLEAFLPEMEKAN++TEKLA+EGKLE++        SD Q E A             +   G     A G     R V+LDFALGDFDDTPIAKME+ K+      AR     D         +E V  G  ++VPGA        +   K  +PLIEEL
Sbjct:    1 MNLPPSSLLGRLEAFLPEMEKANQKTEKLAQEGKLEVLXXXXXXXXSDKQTEGAEGTDDEAGDSEVEEEEEGGQVEGAAGVVAAGRTVQLDFALGDFDDTPIAKMEQEKEA-----AREAGGVDAGATGGVEEEEGVEEGGDVVVPGA--------AHPKKPSQPLIEEL 157
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BLAST of mRNA_H-elongata_contig157322.3735.1 vs. uniprot
Match: A0A836CNZ4_9STRA (Uncharacterized protein (Fragment) n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CNZ4_9STRA)

HSP 1 Score: 66.2 bits (160), Expect = 1.870e-10
Identity = 43/106 (40.57%), Postives = 61/106 (57.55%), Query Frame = 3 
Query:   66 MDLPRSSLLGRLEAFLPEMEKANRETEKLAEEGKLEIIDKKLEVASSDDQREQAXXXXXXXXXXXXXDGLPGAAEGNAIPP---RVVKLDFALGDFDDTPIAKMEE 374
            M+LP SSLLG+LEAFLP++ +ANR+ ++   EG+ E ID  L + ++D   E++                    EG        +VV+L FALGDFDDTP+A+ EE
Sbjct:    1 MELPPSSLLGKLEAFLPKLAQANRDLQQQTLEGQAETIDAHLALDAADGNDEESESSDGEGDVAVAGASARAINEGAGDMQGGGKVVQLSFALGDFDDTPVAQFEE 106
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig157322.3735.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D7FW89_ECTSI3.610e-2344.71Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A836CNZ4_9STRA1.870e-1040.57Uncharacterized protein (Fragment) n=1 Tax=Tribone... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig157322contigH-elongata_contig157322:2..1104 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionhypothetical protein
Ec32 orthologEc-01_003810.1
Exons2
Model size746
Cds size495
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig157322.3735.1prot_H-elongata_contig157322.3735.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig157322 188..1039 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929928.9293606-UTR-H-elongata_contig157322:1..1871622929928.9293606-UTR-H-elongata_contig157322:1..187Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig157322 2..187 -
1691679211.7946124-UTR-H-elongata_contig157322:1..1871691679211.7946124-UTR-H-elongata_contig157322:1..187Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig157322 2..187 -
1622929929.070074-UTR-H-elongata_contig157322:1039..11041622929929.070074-UTR-H-elongata_contig157322:1039..1104Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig157322 1040..1104 -
1691679211.8166943-UTR-H-elongata_contig157322:1039..11041691679211.8166943-UTR-H-elongata_contig157322:1039..1104Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig157322 1040..1104 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929929.0398088-CDS-H-elongata_contig157322:187..4241622929929.0398088-CDS-H-elongata_contig157322:187..424Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig157322 188..424 -
1691679211.802069-CDS-H-elongata_contig157322:187..4241691679211.802069-CDS-H-elongata_contig157322:187..424Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig157322 188..424 -
1622929929.0561507-CDS-H-elongata_contig157322:781..10391622929929.0561507-CDS-H-elongata_contig157322:781..1039Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig157322 782..1039 -
1691679211.809359-CDS-H-elongata_contig157322:781..10391691679211.809359-CDS-H-elongata_contig157322:781..1039Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig157322 782..1039 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig157322.3735.1

>prot_H-elongata_contig157322.3735.1 ID=prot_H-elongata_contig157322.3735.1|Name=mRNA_H-elongata_contig157322.3735.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=165bp
MDLPRSSLLGRLEAFLPEMEKANRETEKLAEEGKLEIIDKKLEVASSDDQ
REQAEETDPEDGEEEEEDGLPGAAEGNAIPPRVVKLDFALGDFDDTPIAK
MEEAKQDKEYYDARHVAADDQDRVNEGALKEAVGSLILVPGARIESSGEA
SSQPKSRKPLIEEL*
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mRNA from alignment at H-elongata_contig157322:2..1104-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig157322.3735.1 ID=mRNA_H-elongata_contig157322.3735.1|Name=mRNA_H-elongata_contig157322.3735.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=1103bp|location=Sequence derived from alignment at H-elongata_contig157322:2..1104- (Himanthalia elongata Himel1 dioecious)
AGGCTGTGTGCTACGACGACGACCTGCTGAGTGCTGCCGTTAAATTGCCG
GTGGATCGTGAAACCATGGACCTGCCGCGAAGTTCGCTTCTCGGGCGGCT
GGAAGCGTTTCTCCCGGAAATGGAGAAGGCCAACCGTGAGACGGAAAAGT
TGGCTGAAGAGGGCAAGCTTGAGATCATCGATAAAAAGCTAGAGGTGGCC
AGTTCCGATGATCAAAGGGAGCAAGCGGAGGAGACGGATCCCGAGGATGG
CGAAGAGGAAGAAGAGGACGGACTGCCTGGGGCGGCGGAAGGAAATGCGA
TTCCTCCTCGAGTAGTCAAACTGGCGAGTTTGTCTCTCTCAAACGCGTGT
CTGCACTGCTGTAAACGATGCACACACCCGCGAACACCGTGGGCTATAAA
TATATTATCGTAATAATACTTGATCAATGTATACTCGTTTAACGATAATG
GGTGTATTTCCTTAAGACTTCATTTGTGACCCATGTAGTGTACAGTAACA
GTACTTGATTATTAATGGTAAAACGTTGATCTTGGCGAACATGTTAAACA
AACCTATAGAAATGCGGCGGTAGCACTATTCTTTTAATCACTGTCTCCTA
ACTGTGATATACTCTCGTGACAAGCGATCTACATACACCATCCCCCCTCC
TAATCGAAGCCCCATGAATGCCATTTACAGGATTTCGCTCTAGGAGATTT
CGACGACACTCCAATAGCCAAGATGGAGGAAGCCAAACAAGATAAGGAAT
ATTACGACGCACGGCATGTCGCAGCCGATGACCAAGATCGTGTTAACGAG
GGCGCTCTGAAGGAGGCGGTTGGAAGCTTGATCCTAGTGCCCGGGGCAAG
GATAGAGTCTTCCGGAGAGGCATCTTCCCAACCCAAGTCGCGCAAACCTT
TGATTGAGGAATTGTAGTCATGAGCGCTCGTTAGGCGGGCTAGTTCTTTA
TAGAGGAAACGCTTGTACAATACAGTATGCACGGAGATAATGTCGCCAAC
TCTAACGAAGATATATTTTGTACGGCCGAGATAGGAAGCGGTTAAATTGT
TGACGTGTGCGTGTTTTTTTTTACCAGTAAAAATCGGAAAATCTCGTTTG
GGA
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Coding sequence (CDS) from alignment at H-elongata_contig157322:2..1104-

>mRNA_H-elongata_contig157322.3735.1 ID=mRNA_H-elongata_contig157322.3735.1|Name=mRNA_H-elongata_contig157322.3735.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=990bp|location=Sequence derived from alignment at H-elongata_contig157322:2..1104- (Himanthalia elongata Himel1 dioecious)
ATGGACCTGCCGCGAAGTTCGCTTCTCGGGCGGCTGGAAGCGTTTCTCCC
GGAAATGGAGAAGGCCAACCGTGAGACGGAAAAGTTGGCTGAAGAGGGCA
AGCTTGAGATCATCGATAAAAAGCTAGAGGTGGCCAGTTCCGATGATCAA
AGGGAGCAAGCGGAGGAGACGGATCCCGAGGATGGCGAAGAGGAAGAAGA
GGACGGACTGCCTGGGGCGGCGGAAGGAAATGCGATTCCTCCTCGAGTAG
TCAAACTGATGGACCTGCCGCGAAGTTCGCTTCTCGGGCGGCTGGAAGCG
TTTCTCCCGGAAATGGAGAAGGCCAACCGTGAGACGGAAAAGTTGGCTGA
AGAGGGCAAGCTTGAGATCATCGATAAAAAGCTAGAGGTGGCCAGTTCCG
ATGATCAAAGGGAGCAAGCGGAGGAGACGGATCCCGAGGATGGCGAAGAG
GAAGAAGAGGACGGACTGCCTGGGGCGGCGGAAGGAAATGCGATTCCTCC
TCGAGTAGTCAAACTGGATTTCGCTCTAGGAGATTTCGACGACACTCCAA
TAGCCAAGATGGAGGAAGCCAAACAAGATAAGGAATATTACGACGCACGG
CATGTCGCAGCCGATGACCAAGATCGTGTTAACGAGGGCGCTCTGAAGGA
GGCGGTTGGAAGCTTGATCCTAGTGCCCGGGGCAAGGATAGAGTCTTCCG
GAGAGGCATCTTCCCAACCCAAGTCGCGCAAACCTTTGATTGAGGAATTG
TAGGATTTCGCTCTAGGAGATTTCGACGACACTCCAATAGCCAAGATGGA
GGAAGCCAAACAAGATAAGGAATATTACGACGCACGGCATGTCGCAGCCG
ATGACCAAGATCGTGTTAACGAGGGCGCTCTGAAGGAGGCGGTTGGAAGC
TTGATCCTAGTGCCCGGGGCAAGGATAGAGTCTTCCGGAGAGGCATCTTC
CCAACCCAAGTCGCGCAAACCTTTGATTGAGGAATTGTAG
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