mRNA_H-elongata_contig157312.3734.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig157312.3734.1
Unique NamemRNA_H-elongata_contig157312.3734.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
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BLAST of mRNA_H-elongata_contig157312.3734.1 vs. uniprot
Match: D7FM58_ECTSI (Adenine DNA glycosylase n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FM58_ECTSI)

HSP 1 Score: 81.6 bits (200), Expect = 7.590e-17
Identity = 37/45 (82.22%), Postives = 40/45 (88.89%), Query Frame = 1 
Query:   16 SAYGTWVSEVMLQQTRVETVVEYYVRWMALFPTPKALANADLEQV 150
            SAYGTWVSEVMLQQTRVETV++YYV+WM LFPTP  LA A LEQV
Sbjct:  176 SAYGTWVSEVMLQQTRVETVIDYYVKWMTLFPTPNDLAAASLEQV 220
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BLAST of mRNA_H-elongata_contig157312.3734.1 vs. uniprot
Match: A0A7S1QR20_ALECA (Hypothetical protein (Fragment) n=1 Tax=Alexandrium catenella TaxID=2925 RepID=A0A7S1QR20_ALECA)

HSP 1 Score: 72.0 bits (175), Expect = 3.280e-15
Identity = 33/47 (70.21%), Postives = 40/47 (85.11%), Query Frame = 1 
Query:   10 QKSAYGTWVSEVMLQQTRVETVVEYYVRWMALFPTPKALANADLEQV 150
            ++SAYGTWVSEVMLQQT+VE VVEY+ RWM LFPT  ALA A+ ++V
Sbjct:   17 ERSAYGTWVSEVMLQQTQVERVVEYWTRWMKLFPTASALAVAEGDEV 63
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BLAST of mRNA_H-elongata_contig157312.3734.1 vs. uniprot
Match: A0A7S3M064_9STRA (Adenine DNA glycosylase (Fragment) n=1 Tax=Spumella elongata TaxID=89044 RepID=A0A7S3M064_9STRA)

HSP 1 Score: 72.4 bits (176), Expect = 8.140e-14
Identity = 32/45 (71.11%), Postives = 39/45 (86.67%), Query Frame = 1 
Query:   16 SAYGTWVSEVMLQQTRVETVVEYYVRWMALFPTPKALANADLEQV 150
            SAYGTW+SEVMLQQTRVETV+EY+ RWMA+FP  K LA+A  ++V
Sbjct:   67 SAYGTWISEVMLQQTRVETVIEYWNRWMAVFPDVKTLASASPDEV 111
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BLAST of mRNA_H-elongata_contig157312.3734.1 vs. uniprot
Match: A0A1V9ZNM1_9STRA (Adenine DNA glycosylase n=1 Tax=Thraustotheca clavata TaxID=74557 RepID=A0A1V9ZNM1_9STRA)

HSP 1 Score: 72.8 bits (177), Expect = 9.770e-14
Identity = 34/45 (75.56%), Postives = 37/45 (82.22%), Query Frame = 1 
Query:   16 SAYGTWVSEVMLQQTRVETVVEYYVRWMALFPTPKALANADLEQV 150
            S Y TWVSE+M QQTRVETVVEYYV+WM  FPT +ALA AD EQV
Sbjct:   55 SPYATWVSEIMCQQTRVETVVEYYVKWMEKFPTVEALAAADPEQV 99
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BLAST of mRNA_H-elongata_contig157312.3734.1 vs. uniprot
Match: A0A1V9ZA94_9STRA (Adenine DNA glycosylase n=1 Tax=Achlya hypogyna TaxID=1202772 RepID=A0A1V9ZA94_9STRA)

HSP 1 Score: 72.8 bits (177), Expect = 9.830e-14
Identity = 34/45 (75.56%), Postives = 37/45 (82.22%), Query Frame = 1 
Query:   16 SAYGTWVSEVMLQQTRVETVVEYYVRWMALFPTPKALANADLEQV 150
            S YGTWVSE+M QQTRVETVV+YYVRWM  FPT  ALA A+ EQV
Sbjct:   57 SPYGTWVSEIMCQQTRVETVVDYYVRWMEKFPTVHALAAAEPEQV 101
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BLAST of mRNA_H-elongata_contig157312.3734.1 vs. uniprot
Match: A0A516AG53_LINPO (Adenine DNA glycosylase n=1 Tax=Lingulodinium polyedra TaxID=160621 RepID=A0A516AG53_LINPO)

HSP 1 Score: 72.8 bits (177), Expect = 9.890e-14
Identity = 34/45 (75.56%), Postives = 37/45 (82.22%), Query Frame = 1 
Query:   16 SAYGTWVSEVMLQQTRVETVVEYYVRWMALFPTPKALANADLEQV 150
            SAYGTWVSEVMLQQT+VE VVEY+ RWM  FPT +ALA AD E V
Sbjct:  155 SAYGTWVSEVMLQQTQVERVVEYWARWMRRFPTVRALAEADAEAV 199
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BLAST of mRNA_H-elongata_contig157312.3734.1 vs. uniprot
Match: A0A067BVX9_SAPPC (Adenine DNA glycosylase n=2 Tax=Saprolegnia TaxID=4769 RepID=A0A067BVX9_SAPPC)

HSP 1 Score: 71.6 bits (174), Expect = 2.450e-13
Identity = 33/45 (73.33%), Postives = 37/45 (82.22%), Query Frame = 1 
Query:   16 SAYGTWVSEVMLQQTRVETVVEYYVRWMALFPTPKALANADLEQV 150
            S YGTWVSE+M QQTRVETVV+YYVRWM  FPT  ALA A+ +QV
Sbjct:   57 SPYGTWVSEIMCQQTRVETVVDYYVRWMEKFPTVHALAAAEPDQV 101
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BLAST of mRNA_H-elongata_contig157312.3734.1 vs. uniprot
Match: A0A5B8MNV0_9CHLO (Adenine DNA glycosylase n=1 Tax=Chloropicon primus TaxID=1764295 RepID=A0A5B8MNV0_9CHLO)

HSP 1 Score: 71.6 bits (174), Expect = 2.500e-13
Identity = 33/49 (67.35%), Postives = 39/49 (79.59%), Query Frame = 1 
Query:    4 DKQKSAYGTWVSEVMLQQTRVETVVEYYVRWMALFPTPKALANADLEQV 150
            DK   AY  WVSEVMLQQTRVETV +YY+RWM  +PT + LANAD+E+V
Sbjct:   86 DKSGFAYCVWVSEVMLQQTRVETVKDYYLRWMQKYPTVEDLANADIEEV 134
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BLAST of mRNA_H-elongata_contig157312.3734.1 vs. uniprot
Match: UPI001262DD77 (adenine DNA glycosylase-like isoform X2 n=1 Tax=Pistacia vera TaxID=55513 RepID=UPI001262DD77)

HSP 1 Score: 71.2 bits (173), Expect = 3.220e-13
Identity = 32/49 (65.31%), Postives = 39/49 (79.59%), Query Frame = 1 
Query:    4 DKQKSAYGTWVSEVMLQQTRVETVVEYYVRWMALFPTPKALANADLEQV 150
            DK++ AYG WVSEVMLQQTRV+TV+EYY RWM  +PT   L+ A LE+V
Sbjct:   51 DKERRAYGVWVSEVMLQQTRVQTVIEYYNRWMKKWPTIHHLSEASLEEV 99
[Close]
BLAST of mRNA_H-elongata_contig157312.3734.1 vs. uniprot
Match: A0A067EIJ3_CITSI (Adenine DNA glycosylase n=6 Tax=Citrus TaxID=2706 RepID=A0A067EIJ3_CITSI)

HSP 1 Score: 71.2 bits (173), Expect = 3.440e-13
Identity = 32/49 (65.31%), Postives = 39/49 (79.59%), Query Frame = 1 
Query:    4 DKQKSAYGTWVSEVMLQQTRVETVVEYYVRWMALFPTPKALANADLEQV 150
            +K+K AYG WVSEVMLQQTRV+TV++YY RWM  +PT   LA A LE+V
Sbjct:  111 EKEKRAYGVWVSEVMLQQTRVQTVIDYYNRWMTKWPTIHHLAKASLEEV 159
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig157312.3734.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FM58_ECTSI7.590e-1782.22Adenine DNA glycosylase n=2 Tax=Ectocarpus TaxID=2... [more]
A0A7S1QR20_ALECA3.280e-1570.21Hypothetical protein (Fragment) n=1 Tax=Alexandriu... [more]
A0A7S3M064_9STRA8.140e-1471.11Adenine DNA glycosylase (Fragment) n=1 Tax=Spumell... [more]
A0A1V9ZNM1_9STRA9.770e-1475.56Adenine DNA glycosylase n=1 Tax=Thraustotheca clav... [more]
A0A1V9ZA94_9STRA9.830e-1475.56Adenine DNA glycosylase n=1 Tax=Achlya hypogyna Ta... [more]
A0A516AG53_LINPO9.890e-1475.56Adenine DNA glycosylase n=1 Tax=Lingulodinium poly... [more]
A0A067BVX9_SAPPC2.450e-1373.33Adenine DNA glycosylase n=2 Tax=Saprolegnia TaxID=... [more]
A0A5B8MNV0_9CHLO2.500e-1367.35Adenine DNA glycosylase n=1 Tax=Chloropicon primus... [more]
UPI001262DD773.220e-1365.31adenine DNA glycosylase-like isoform X2 n=1 Tax=Pi... [more]
A0A067EIJ3_CITSI3.440e-1365.31Adenine DNA glycosylase n=6 Tax=Citrus TaxID=2706 ... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig157312contigH-elongata_contig157312:318..467 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score81.6
Seed ortholog evalue1.1e-13
Seed eggNOG ortholog2880.D7FM58
Preferred nameMUTYH
KEGG koko:K03575,ko:K21121
KEGG Pathwayko03410,map03410
GOsGO:0000075,GO:0000077,GO:0000700,GO:0000701,GO:0000702,GO:0003674,GO:0003676,GO:0003677,GO:0003684,GO:0003690,GO:0003824,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0005737,GO:0005739,GO:0006139,GO:0006259,GO:0006281,GO:0006284,GO:0006285,GO:0006298,GO:0006304,GO:0006725,GO:0006807,GO:0006950,GO:0006974,GO:0006979,GO:0008150,GO:0008152,GO:0008534,GO:0009314,GO:0009411,GO:0009416,GO:0009628,GO:0009893,GO:0009987,GO:0010604,GO:0016787,GO:0016798,GO:0016799,GO:0019104,GO:0019219,GO:0019222,GO:0030983,GO:0031323,GO:0031325,GO:0031570,GO:0031974,GO:0031981,GO:0032069,GO:0032075,GO:0032356,GO:0032357,GO:0032404,GO:0032407,GO:0033554,GO:0034039,GO:0034641,GO:0034644,GO:0035485,GO:0042769,GO:0043085,GO:0043170,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043233,GO:0043412,GO:0044093,GO:0044237,GO:0044238,GO:0044260,GO:0044422,GO:0044424,GO:0044428,GO:0044444,GO:0044446,GO:0044464,GO:0044877,GO:0045007,GO:0045786,GO:0045935,GO:0046483,GO:0048037,GO:0048518,GO:0048519,GO:0048522,GO:0048523,GO:0050789,GO:0050790,GO:0050794,GO:0050896,GO:0051171,GO:0051173,GO:0051336,GO:0051345,GO:0051536,GO:0051539,GO:0051540,GO:0051606,GO:0051716,GO:0051726,GO:0060255,GO:0065007,GO:0065009,GO:0070013,GO:0071214,GO:0071478,GO:0071482,GO:0071704,GO:0072421,GO:0080090,GO:0090304,GO:0097159,GO:0104004,GO:0140097,GO:1901360,GO:1901363,GO:1902799,GO:1902800,GO:1905777,GO:1905779
EggNOG free text desc.purine-specific mismatch base pair DNA N-glycosylase activity
EggNOG OGsCOG1194@1,KOG2457@2759
EC2.3.1.259
COG Functional cat.L
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko01000,ko03036,ko03400
Hectar predicted targeting categoryno signal peptide or anchor
Exons1
Model size150
Cds size150
Stop0
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929928.8952246-CDS-H-elongata_contig157312:317..4671622929928.8952246-CDS-H-elongata_contig157312:317..467Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig157312 318..467 -
1691679211.7822342-CDS-H-elongata_contig157312:317..4671691679211.7822342-CDS-H-elongata_contig157312:317..467Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig157312 318..467 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig157312.3734.1prot_H-elongata_contig157312.3734.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig157312 318..467 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig157312.3734.1

>prot_H-elongata_contig157312.3734.1 ID=prot_H-elongata_contig157312.3734.1|Name=mRNA_H-elongata_contig157312.3734.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=50bp
MDKQKSAYGTWVSEVMLQQTRVETVVEYYVRWMALFPTPKALANADLEQV
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mRNA from alignment at H-elongata_contig157312:318..467-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig157312.3734.1 ID=mRNA_H-elongata_contig157312.3734.1|Name=mRNA_H-elongata_contig157312.3734.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=150bp|location=Sequence derived from alignment at H-elongata_contig157312:318..467- (Himanthalia elongata Himel1 dioecious)
ATGGATAAACAGAAGAGTGCTTATGGTACCTGGGTGTCCGAGGTGATGCT
CCAGCAGACTAGGGTTGAGACGGTGGTGGAGTACTACGTGAGATGGATGG
CACTTTTCCCAACGCCCAAGGCGCTGGCGAATGCTGATCTAGAGCAGGTA
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Coding sequence (CDS) from alignment at H-elongata_contig157312:318..467-

>mRNA_H-elongata_contig157312.3734.1 ID=mRNA_H-elongata_contig157312.3734.1|Name=mRNA_H-elongata_contig157312.3734.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=300bp|location=Sequence derived from alignment at H-elongata_contig157312:318..467- (Himanthalia elongata Himel1 dioecious)
ATGGATAAACAGAAGAGTGCTTATGGTACCTGGGTGTCCGAGGTGATGCT
CCAGCAGACTAGGGTTGAGACGGTGGTGGAGTACTACGTGAGATGGATGG
CACTTTTCCCAACGCCCAAGGCGCTGGCGAATGCTGATCTAGAGCAGGTA
ATGGATAAACAGAAGAGTGCTTATGGTACCTGGGTGTCCGAGGTGATGCT
CCAGCAGACTAGGGTTGAGACGGTGGTGGAGTACTACGTGAGATGGATGG
CACTTTTCCCAACGCCCAAGGCGCTGGCGAATGCTGATCTAGAGCAGGTA
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