mRNA_H-elongata_contig15700.3713.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig15700.3713.1
Unique NamemRNA_H-elongata_contig15700.3713.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
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BLAST of mRNA_H-elongata_contig15700.3713.1 vs. uniprot
Match: A0A6H5L6Q9_9PHAE (Protein xylosyltransferase n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5L6Q9_9PHAE)

HSP 1 Score: 70.5 bits (171), Expect = 6.180e-13
Identity = 30/38 (78.95%), Postives = 35/38 (92.11%), Query Frame = 1 
Query:    1 GYTVTLTAIFGLCKMVQSSADWDYFINLSASDFPLLPQ 114
            GYT+TLTAIFG+C MVQ + +WD+FINLSASDFPLLPQ
Sbjct:  244 GYTITLTAIFGICTMVQWNDEWDFFINLSASDFPLLPQ 281
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BLAST of mRNA_H-elongata_contig15700.3713.1 vs. uniprot
Match: A0A6H5L1U8_9PHAE (GT14 protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5L1U8_9PHAE)

HSP 1 Score: 61.6 bits (148), Expect = 8.150e-10
Identity = 26/36 (72.22%), Postives = 32/36 (88.89%), Query Frame = 1 
Query:    1 GYTVTLTAIFGLCKMVQSSADWDYFINLSASDFPLL 108
            GY++TLTA+FGL  +V+ S DWDYFINLSA+DFPLL
Sbjct:  198 GYSITLTALFGLSTLVEWSRDWDYFINLSATDFPLL 233
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BLAST of mRNA_H-elongata_contig15700.3713.1 vs. uniprot
Match: D8LCA7_ECTSI (Protein xylosyltransferase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LCA7_ECTSI)

HSP 1 Score: 51.2 bits (121), Expect = 3.690e-6
Identity = 21/36 (58.33%), Postives = 28/36 (77.78%), Query Frame = 1 
Query:    1 GYTVTLTAIFGLCKMVQSSADWDYFINLSASDFPLL 108
            G+T+TL A++GL + +  +  WDYFINLSASD PLL
Sbjct:   72 GFTMTLNAVYGLTQALHWNTKWDYFINLSASDLPLL 107
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BLAST of mRNA_H-elongata_contig15700.3713.1 vs. uniprot
Match: A0A6H5KJT8_9PHAE (Protein xylosyltransferase (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KJT8_9PHAE)

HSP 1 Score: 51.2 bits (121), Expect = 3.810e-6
Identity = 21/36 (58.33%), Postives = 28/36 (77.78%), Query Frame = 1 
Query:    1 GYTVTLTAIFGLCKMVQSSADWDYFINLSASDFPLL 108
            G+T+TL A++GL + +  +  WDYFINLSASD PLL
Sbjct:  165 GFTMTLNAVYGLTQALHWNTKWDYFINLSASDLPLL 200
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BLAST of mRNA_H-elongata_contig15700.3713.1 vs. uniprot
Match: UPI00053C1BFE (beta-glucuronosyltransferase GlcAT14C n=1 Tax=Tarenaya hassleriana TaxID=28532 RepID=UPI00053C1BFE)

HSP 1 Score: 50.8 bits (120), Expect = 5.200e-6
Identity = 23/50 (46.00%), Postives = 35/50 (70.00%), Query Frame = 1 
Query:    1 GYTVTLTAIFGLCKMVQSSADWDYFINLSASDFPLLPQVLVRSVFR-LPR 147
            G T+    + G+  M++ ++DWD+FINLSASD+PL+PQ  +  +F  LPR
Sbjct:  131 GPTMLANTLHGVAIMLKKASDWDWFINLSASDYPLMPQDDILHIFSYLPR 180
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BLAST of mRNA_H-elongata_contig15700.3713.1 vs. uniprot
Match: Q0WS14_ARATH (Putative RING zinc finger protein n=1 Tax=Arabidopsis thaliana TaxID=3702 RepID=Q0WS14_ARATH)

HSP 1 Score: 49.3 bits (116), Expect = 1.640e-5
Identity = 22/50 (44.00%), Postives = 35/50 (70.00%), Query Frame = 1 
Query:    1 GYTVTLTAIFGLCKMVQSSADWDYFINLSASDFPLLPQVLVRSVFR-LPR 147
            G T+  + + G+  +++ + DWD+FINLSASD+PL+PQ  +  +F  LPR
Sbjct:  130 GPTMLASTLHGVAILLKKAKDWDWFINLSASDYPLMPQDDILHIFSYLPR 179
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BLAST of mRNA_H-elongata_contig15700.3713.1 vs. uniprot
Match: GT14C_ARATH (Beta-glucuronosyltransferase GlcAT14C n=13 Tax=Pentapetalae TaxID=1437201 RepID=GT14C_ARATH)

HSP 1 Score: 49.3 bits (116), Expect = 1.820e-5
Identity = 22/50 (44.00%), Postives = 35/50 (70.00%), Query Frame = 1 
Query:    1 GYTVTLTAIFGLCKMVQSSADWDYFINLSASDFPLLPQVLVRSVFR-LPR 147
            G T+  + + G+  +++ + DWD+FINLSASD+PL+PQ  +  +F  LPR
Sbjct:  130 GPTMLASTLHGVAILLKKAKDWDWFINLSASDYPLMPQDDILHIFSYLPR 179
[Close]
BLAST of mRNA_H-elongata_contig15700.3713.1 vs. uniprot
Match: A0A7J7CSU6_TRIWF (Xylosyltransferase n=1 Tax=Tripterygium wilfordii TaxID=458696 RepID=A0A7J7CSU6_TRIWF)

HSP 1 Score: 49.3 bits (116), Expect = 1.830e-5
Identity = 23/50 (46.00%), Postives = 34/50 (68.00%), Query Frame = 1 
Query:    1 GYTVTLTAIFGLCKMVQSSADWDYFINLSASDFPLLPQVLVRSVFR-LPR 147
            G TV  + +  +  +++ + DWD+FINLSASD+PLLPQ  +  +F  LPR
Sbjct:  144 GPTVIASTLHSIAVLLKRAKDWDWFINLSASDYPLLPQDDILHIFSYLPR 193
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BLAST of mRNA_H-elongata_contig15700.3713.1 vs. uniprot
Match: A0A0D3BR65_BRAOL (Uncharacterized protein n=10 Tax=Brassiceae TaxID=981071 RepID=A0A0D3BR65_BRAOL)

HSP 1 Score: 48.1 bits (113), Expect = 4.670e-5
Identity = 21/50 (42.00%), Postives = 35/50 (70.00%), Query Frame = 1 
Query:    1 GYTVTLTAIFGLCKMVQSSADWDYFINLSASDFPLLPQVLVRSVFR-LPR 147
            G T+  + + G+  +++ + DWD+FINLS+SD+PL+PQ  +  +F  LPR
Sbjct:  128 GPTMLASTLHGVAILLKKAEDWDWFINLSSSDYPLMPQDDILHIFSYLPR 177
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BLAST of mRNA_H-elongata_contig15700.3713.1 vs. uniprot
Match: A0A067KHK7_JATCU (Uncharacterized protein n=1 Tax=Jatropha curcas TaxID=180498 RepID=A0A067KHK7_JATCU)

HSP 1 Score: 47.8 bits (112), Expect = 6.400e-5
Identity = 20/50 (40.00%), Postives = 35/50 (70.00%), Query Frame = 1 
Query:    1 GYTVTLTAIFGLCKMVQSSADWDYFINLSASDFPLLPQVLVRSVFR-LPR 147
            G T+  + +  +  +++ ++DWD+F+NLSASD+PL+PQ  +  +F  LPR
Sbjct:  143 GPTMIASTLHAIAILLKQASDWDWFVNLSASDYPLMPQDDILHIFSYLPR 192
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig15700.3713.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 11
Match NameE-valueIdentityDescription
A0A6H5L6Q9_9PHAE6.180e-1378.95Protein xylosyltransferase n=2 Tax=Ectocarpus TaxI... [more]
A0A6H5L1U8_9PHAE8.150e-1072.22GT14 protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A... [more]
D8LCA7_ECTSI3.690e-658.33Protein xylosyltransferase n=1 Tax=Ectocarpus sili... [more]
A0A6H5KJT8_9PHAE3.810e-658.33Protein xylosyltransferase (Fragment) n=1 Tax=Ecto... [more]
UPI00053C1BFE5.200e-646.00beta-glucuronosyltransferase GlcAT14C n=1 Tax=Tare... [more]
Q0WS14_ARATH1.640e-544.00Putative RING zinc finger protein n=1 Tax=Arabidop... [more]
GT14C_ARATH1.820e-544.00Beta-glucuronosyltransferase GlcAT14C n=13 Tax=Pen... [more]
A0A7J7CSU6_TRIWF1.830e-546.00Xylosyltransferase n=1 Tax=Tripterygium wilfordii ... [more]
A0A0D3BR65_BRAOL4.670e-542.00Uncharacterized protein n=10 Tax=Brassiceae TaxID=... [more]
A0A067KHK7_JATCU6.400e-540.00Uncharacterized protein n=1 Tax=Jatropha curcas Ta... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig15700contigH-elongata_contig15700:7462..7608 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score71.2
Seed ortholog evalue1.5e-10
Seed eggNOG ortholog2880.D7FMI2
Preferred nameXYLT2
KEGG koko:K00771
KEGG ReactionR05925
KEGG Pathwayko00532,ko00534,ko01100,map00532,map00534,map01100
KEGG ModuleM00057
GOsGO:0000003,GO:0000139,GO:0002009,GO:0002119,GO:0002164,GO:0003674,GO:0003824,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005794,GO:0005975,GO:0005996,GO:0006022,GO:0006023,GO:0006024,GO:0006029,GO:0006082,GO:0006139,GO:0006725,GO:0006790,GO:0006793,GO:0006807,GO:0006950,GO:0007275,GO:0007399,GO:0007610,GO:0008150,GO:0008152,GO:0008194,GO:0009058,GO:0009059,GO:0009100,GO:0009101,GO:0009225,GO:0009266,GO:0009408,GO:0009628,GO:0009653,GO:0009791,GO:0009888,GO:0009987,GO:0010033,GO:0010721,GO:0010975,GO:0010977,GO:0012505,GO:0015012,GO:0016020,GO:0016021,GO:0016740,GO:0016757,GO:0016763,GO:0018991,GO:0019098,GO:0019321,GO:0019538,GO:0022008,GO:0022414,GO:0030154,GO:0030158,GO:0030166,GO:0030201,GO:0030202,GO:0030203,GO:0030204,GO:0030206,GO:0030210,GO:0031090,GO:0031224,GO:0031344,GO:0031345,GO:0031984,GO:0032101,GO:0032102,GO:0032501,GO:0032502,GO:0032504,GO:0033319,GO:0033554,GO:0034097,GO:0034605,GO:0034641,GO:0034645,GO:0035252,GO:0040025,GO:0042221,GO:0042285,GO:0042732,GO:0043170,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043436,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044272,GO:0044281,GO:0044422,GO:0044424,GO:0044425,GO:0044431,GO:0044444,GO:0044446,GO:0044464,GO:0045595,GO:0045596,GO:0045664,GO:0045665,GO:0046483,GO:0048513,GO:0048519,GO:0048523,GO:0048569,GO:0048583,GO:0048585,GO:0048609,GO:0048679,GO:0048681,GO:0048699,GO:0048729,GO:0048731,GO:0048856,GO:0048869,GO:0050650,GO:0050654,GO:0050767,GO:0050768,GO:0050789,GO:0050793,GO:0050794,GO:0050896,GO:0051093,GO:0051128,GO:0051129,GO:0051239,GO:0051241,GO:0051716,GO:0051960,GO:0051961,GO:0055086,GO:0060284,GO:0060429,GO:0065007,GO:0070555,GO:0070570,GO:0070571,GO:0071704,GO:0080134,GO:0080135,GO:0098588,GO:0098791,GO:0120035,GO:0140096,GO:1901135,GO:1901137,GO:1901360,GO:1901564,GO:1901566,GO:1901576,GO:1903034,GO:1903035,GO:1903510,GO:2000026
EggNOG free text desc.acetylglucosaminyltransferase activity
EggNOG OGsKOG0799@1,KOG0799@2759
EC2.4.2.26
COG Functional cat.O
CAZyGT14
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00002,ko01000,ko01003
Hectar predicted targeting categorysignal peptide
Exons1
Model size147
Cds size147
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929927.3693652-CDS-H-elongata_contig15700:7461..76081622929927.3693652-CDS-H-elongata_contig15700:7461..7608Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig15700 7462..7608 +
1691679211.0292113-CDS-H-elongata_contig15700:7461..76081691679211.0292113-CDS-H-elongata_contig15700:7461..7608Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig15700 7462..7608 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig15700.3713.1prot_H-elongata_contig15700.3713.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig15700 7462..7608 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig15700.3713.1

>prot_H-elongata_contig15700.3713.1 ID=prot_H-elongata_contig15700.3713.1|Name=mRNA_H-elongata_contig15700.3713.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=49bp
GYTVTLTAIFGLCKMVQSSADWDYFINLSASDFPLLPQVLVRSVFRLPR
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mRNA from alignment at H-elongata_contig15700:7462..7608+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig15700.3713.1 ID=mRNA_H-elongata_contig15700.3713.1|Name=mRNA_H-elongata_contig15700.3713.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=147bp|location=Sequence derived from alignment at H-elongata_contig15700:7462..7608+ (Himanthalia elongata Himel1 dioecious)
GGCTATACTGTAACACTGACTGCGATCTTCGGCTTGTGCAAGATGGTACA
GTCAAGCGCTGACTGGGATTACTTCATCAACCTATCCGCTTCCGACTTCC
CTCTCCTTCCTCAGGTGCTCGTCAGATCTGTGTTTCGTTTACCTCGC
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Coding sequence (CDS) from alignment at H-elongata_contig15700:7462..7608+

>mRNA_H-elongata_contig15700.3713.1 ID=mRNA_H-elongata_contig15700.3713.1|Name=mRNA_H-elongata_contig15700.3713.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=294bp|location=Sequence derived from alignment at H-elongata_contig15700:7462..7608+ (Himanthalia elongata Himel1 dioecious)
GGCTATACTGTAACACTGACTGCGATCTTCGGCTTGTGCAAGATGGTACA
GTCAAGCGCTGACTGGGATTACTTCATCAACCTATCCGCTTCCGACTTCC
CTCTCCTTCCTCAGGTGCTCGTCAGATCTGTGTTTCGTTTACCTCGCGGC
TATACTGTAACACTGACTGCGATCTTCGGCTTGTGCAAGATGGTACAGTC
AAGCGCTGACTGGGATTACTTCATCAACCTATCCGCTTCCGACTTCCCTC
TCCTTCCTCAGGTGCTCGTCAGATCTGTGTTTCGTTTACCTCGC
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