mRNA_H-elongata_contig15673.3698.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig15673.3698.1
Unique NamemRNA_H-elongata_contig15673.3698.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig15673.3698.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig15673contigH-elongata_contig15673:967..2182 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons3
Model size342
Cds size276
Stop1
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig15673.3698.1prot_H-elongata_contig15673.3698.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig15673 1033..2182 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929924.9998193-UTR-H-elongata_contig15673:966..10321622929924.9998193-UTR-H-elongata_contig15673:966..1032Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig15673 967..1032 -
1691679210.37718-UTR-H-elongata_contig15673:966..10321691679210.37718-UTR-H-elongata_contig15673:966..1032Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig15673 967..1032 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929925.0906909-CDS-H-elongata_contig15673:1032..11891622929925.0906909-CDS-H-elongata_contig15673:1032..1189Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig15673 1033..1189 -
1691679210.3854575-CDS-H-elongata_contig15673:1032..11891691679210.3854575-CDS-H-elongata_contig15673:1032..1189Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig15673 1033..1189 -
1622929925.109408-CDS-H-elongata_contig15673:1750..18211622929925.109408-CDS-H-elongata_contig15673:1750..1821Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig15673 1751..1821 -
1691679210.4013965-CDS-H-elongata_contig15673:1750..18211691679210.4013965-CDS-H-elongata_contig15673:1750..1821Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig15673 1751..1821 -
1622929925.1477668-CDS-H-elongata_contig15673:2134..21821622929925.1477668-CDS-H-elongata_contig15673:2134..2182Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig15673 2135..2182 -
1691679210.416695-CDS-H-elongata_contig15673:2134..21821691679210.416695-CDS-H-elongata_contig15673:2134..2182Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig15673 2135..2182 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig15673.3698.1

>prot_H-elongata_contig15673.3698.1 ID=prot_H-elongata_contig15673.3698.1|Name=mRNA_H-elongata_contig15673.3698.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=92bp
RVASYAQIRYHSVQYQAGDRSRIDTRIPDCGNLTEVILGSATTGPSHFVY
QVVSLTRESSLFSCMPPSRWRCGTFGTARGVTRYLVTIRRE*
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mRNA from alignment at H-elongata_contig15673:967..2182-

Legend: polypeptideCDSUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig15673.3698.1 ID=mRNA_H-elongata_contig15673.3698.1|Name=mRNA_H-elongata_contig15673.3698.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=1216bp|location=Sequence derived from alignment at H-elongata_contig15673:967..2182- (Himanthalia elongata Himel1 dioecious)
CGGGTCGCTAGTTACGCCCAAATAAGATACCACTCAGTTCAATATCAGGT
GAGCCCTTGTTTGTACATCCCACGATGCAAGTCCCGTTTTAGATTTATCA
CTGAACCCACAGTGTCATTCATCGATCATACCAACTTTACGCCGAGTTCG
CGAAGGTTGGTGCTTTGAAGCCCGGCGAAACATAGACTTTGGAATTCCAA
ACGGGACACTTCCTTGATGCATATAAAATTTATTAGACTTGAACTATATG
GTCTTTTAACAAAATAATTAAGATGATATTCCCCAGCTTTCTTTGCTGAT
AACCGGCTGTAGCACGTCTTCATCCTTCTGCTACTGATGGCTACTGCTGG
CGCTTTCACAGGCTGGCGATCGTTCGCGGATTGATACTAGAATTCCTGAT
TGTGGCAACCTCACTGAAGTCATCCTTGGCAGGTACCGGAACCCTCGTCT
TCCCGATCTAAGGAGATTATATTGGGGGATCTCTGCGCATCGTTTAGGTT
GATTCTGGGTTTCTGATTTGGGCAGCGTCTCTAACCATTTTGCATTTTTA
GCTGACCGTAAGACGCCTTGTAGCTATAATTATTAAAAAACATATGAACT
CATTCCAACCCTCCGAACATCCACACCTTCTTAGCATCGTAAGAGGTGTA
GTCCAGGACCAACTATCGTCAGGTTCGAATGTGGACATTTTTATTACATT
TATTATAGTAAGGTGTAGAAAGGAGACCAAAATTCTGCGGGCATTGTTGC
AGGTAGTCAATCCCGCTTCAAAACCACTTGTCTCTTTTGGCGGTTGCGGG
TGTAGCTTCCCCAGCAATCCGCAACGGATATAAGCGGCCGATACGAATCG
CTAAAGTACCTGACTGTACAAAATGTTGTTTAAAGCAGCTGCAAGTATAT
AATTGAAACCGGAAGGTACAGTAAAATAGCGCCGTCTACAGCAACTAACT
TTGGTTCCCTGTCCCACGATCTCCATATCCAATGTCTATACAGCGCTACG
ACGGGGCCATCACATTTTGTGTATCAAGTCGTAAGCTTAACCCGCGAGAG
TAGCTTATTCAGCTGTATGCCACCATCACGATGGAGGTGTGGTACGTTCG
GCACGGCGAGAGGTGTGACGAGGTACCTAGTGACAATACGGAGAGAATAG
CTTGGCAAAATTCCGCTGTACACAGACAGGGTCGCTGGTATGACCCGCCC
CTCACCCAGCTTGGCC
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Coding sequence (CDS) from alignment at H-elongata_contig15673:967..2182-

>mRNA_H-elongata_contig15673.3698.1 ID=mRNA_H-elongata_contig15673.3698.1|Name=mRNA_H-elongata_contig15673.3698.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=552bp|location=Sequence derived from alignment at H-elongata_contig15673:967..2182- (Himanthalia elongata Himel1 dioecious)
CGGGTCGCTAGTTACGCCCAAATAAGATACCACTCAGTTCAATATCAGCG
GGTCGCTAGTTACGCCCAAATAAGATACCACTCAGTTCAATATCAGGCTG
GCGATCGTTCGCGGATTGATACTAGAATTCCTGATTGTGGCAACCTCACT
GAAGTCATCCTTGGCAGGCTGGCGATCGTTCGCGGATTGATACTAGAATT
CCTGATTGTGGCAACCTCACTGAAGTCATCCTTGGCAGCGCTACGACGGG
GCCATCACATTTTGTGTATCAAGTCGTAAGCTTAACCCGCGAGAGTAGCT
TATTCAGCTGTATGCCACCATCACGATGGAGGTGTGGTACGTTCGGCACG
GCGAGAGGTGTGACGAGGTACCTAGTGACAATACGGAGAGAATAGCGCTA
CGACGGGGCCATCACATTTTGTGTATCAAGTCGTAAGCTTAACCCGCGAG
AGTAGCTTATTCAGCTGTATGCCACCATCACGATGGAGGTGTGGTACGTT
CGGCACGGCGAGAGGTGTGACGAGGTACCTAGTGACAATACGGAGAGAAT
AG
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