mRNA_H-elongata_contig156623.3691.1 (mRNA) Himanthalia elongata Himel1 dioecious
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Overview
Homology
BLAST of mRNA_H-elongata_contig156623.3691.1 vs. uniprot
Match: D8LTS5_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LTS5_ECTSI) HSP 1 Score: 115 bits (288), Expect = 6.130e-26 Identity = 114/219 (52.05%), Postives = 128/219 (58.45%), Query Frame = 1
Query: 1 FLFALLFGVSVVVXXXXXXXXXXXXXXXXXXXXXXXXFGLLIKGGAALEAAQRITTVVFDKTGTLTEGKPIVTDVVPVQRGKAFEEALLSSAPASEAVASAVLALAAACESSSEHPVXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXPGRGVACQHPLGRVC--VGNRTGVVDTLGEADGLMRDLEEAGKTAVIVTLDGEAIGVIAVADADKE 651
FLFALLFGVSVV XXXXXXXXXXXXXXXXXXXXXXXX G+LIKGGAALEAA R+ TVVFDKTGTLT GKP +TDVVP+ R A E L S+A S HPV G + G+V VGN G ++L EAD +M+ LEE GKTAVIVT+DGEA+GV+AVAD DKE
Sbjct: 934 FLFALLFGVSVVXXXXXXXXXXXXXXXXXXXXXXXXXNGVLIKGGAALEAAHRVNTVVFDKTGTLTRGKPFLTDVVPI-RSPALERLLASAA--------------------SLHPVGRVCVGTR-----------------------------GWAESNGRKAGKVVLVVGNGDGKKESLEEADRIMKGLEEEGKTAVIVTVDGEAVGVVAVADTDKE 1102
BLAST of mRNA_H-elongata_contig156623.3691.1 vs. uniprot
Match: A0A7L4R1L1_9EURY (Heavy metal translocating P-type ATPase (Fragment) n=2 Tax=Methanosarcinales TaxID=94695 RepID=A0A7L4R1L1_9EURY) HSP 1 Score: 94.0 bits (232), Expect = 1.580e-18 Identity = 72/220 (32.73%), Postives = 102/220 (46.36%), Query Frame = 1
Query: 1 FLFALLFGVSVVVXXXXXXXXXXXXXXXXXXXXXXXXFGLLIKGGAALEAAQRITTVVFDKTGTLTEGKPIVTDVVPVQRGKAFEEALLSSAPASEAVASAVLALAAACESSSEHPVXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXPGRGVACQHPLGRVCVGNRTGVVDT---LGEADGLMRDLEEAGKTAVIVTLDGEAIGVIAVADADKE 651
FLF+LL G++V+V G+LIKGG ALE ++++ T+VFDKTGTLTEGKP++TD++ V G+ E+ +LS LAA E SEHP+ PG GV V +G R + D+ + G + +LE GKTA++V++DG A G++AVAD KE
Sbjct: 555 FLFSLLIGITVLVISCPCAVGLATPVAIMVGTGKGAENGILIKGGEALEVSRKVDTIVFDKTGTLTEGKPVLTDIIAV--GEHSEDEVLS--------------LAATAEKGSEHPLGEAIVNAAVDGNIPIHDVSSFESI------------PGHGVKAVIKEQEVLLGTRKLMSDSNIDVSSLTGRLEELEHQGKTAMLVSVDGNATGIVAVADTLKE 746
BLAST of mRNA_H-elongata_contig156623.3691.1 vs. uniprot
Match: A0A284VN25_9EURY (Copper-exporting P-type ATPase A n=2 Tax=Archaea TaxID=2157 RepID=A0A284VN25_9EURY) HSP 1 Score: 92.8 bits (229), Expect = 4.040e-18 Identity = 72/220 (32.73%), Postives = 102/220 (46.36%), Query Frame = 1
Query: 1 FLFALLFGVSVVVXXXXXXXXXXXXXXXXXXXXXXXXFGLLIKGGAALEAAQRITTVVFDKTGTLTEGKPIVTDVVPVQRGKAFEEALLSSAPASEAVASAVLALAAACESSSEHPVXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXPGRGVACQHPLGRVCVGNRTGVVDT---LGEADGLMRDLEEAGKTAVIVTLDGEAIGVIAVADADKE 651
FLF+LL ++V++ G+LIKGG ALE AQ++ T+VFDKTGTLT+G+P +TDV+ + +G E VL LAA E SEHP+ PGRGV +H R+ +G R +++ + A+ M LE GKTA++V+LD E +G++AVAD KE
Sbjct: 476 FLFSLLISITVLIISCPCAVGLATPTAIMVGTGKGAENGILIKGGEALERAQKLDTIVFDKTGTLTKGEPALTDVIAI-KGTEHE----------------VLKLAATAEKGSEHPLGEAILKGAKARGIDIPDAEAFRAI------------PGRGVEVKHDGKRLLIGTRKLMLENSIDILPANSNMEKLEHDGKTAMLVSLDSELMGIVAVADTLKE 666
BLAST of mRNA_H-elongata_contig156623.3691.1 vs. uniprot
Match: Q12Y93_METBU (Copper-transporting P-type ATPase n=2 Tax=Methanococcoides TaxID=2225 RepID=Q12Y93_METBU) HSP 1 Score: 90.9 bits (224), Expect = 1.900e-17 Identity = 72/219 (32.88%), Postives = 97/219 (44.29%), Query Frame = 1
Query: 1 FLFALLFGVSVVVXXXXXXXXXXXXXXXXXXXXXXXXFGLLIKGGAALEAAQRITTVVFDKTGTLTEGKPIVTDVVPVQRGKAFEEALLSSAPASEAVASAVLALAAACESSSEHPVXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXPGRGVACQHPLGRVCVGNRTGVVDTLGEADGL---MRDLEEAGKTAVIVTLDGEAIGVIAVADADK 648
FLF+LL G++V+V G+LIKGG ALE ++I T+VFDKTGTLTEGKP++TDV+ E VL+LAA E SEHP+ PG GV +V +G R + D + G+ + +LE GKTA++V+ DG AIG++AVAD K
Sbjct: 570 FLFSLLIGITVLVISCPCAVGLATPVAIMVGTGKGAENGILIKGGEALEVTRKIGTIVFDKTGTLTEGKPVLTDVITFGDHSRDE----------------VLSLAATAEKGSEHPLGEAIVNGAVDSNVDILDTTAFDSI------------PGHGVTATIDGRKVLLGTRKLMADNNVDVSGMTDALEELELQGKTAMLVSADGNAIGIVAVADTLK 760
BLAST of mRNA_H-elongata_contig156623.3691.1 vs. uniprot
Match: A0A2V7EZY4_9BACT (Heavy metal translocating P-type ATPase (Fragment) n=1 Tax=Candidatus Rokubacteria bacterium TaxID=2053607 RepID=A0A2V7EZY4_9BACT) HSP 1 Score: 90.1 bits (222), Expect = 2.270e-17 Identity = 75/187 (40.11%), Postives = 94/187 (50.27%), Query Frame = 1
Query: 112 FGLLIKGGAALEAAQRITTVVFDKTGTLTEGKPIVTDVVPVQRGKAFEEALLSSAPASEAVASA--VLALAAACESSSEHPVXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXPGRGVACQHPLGRVCVGNRT-----GV-VDTLGEADGLMRDLEEAGKTAVIVTLDGEAIGVIAVADADK 648
FG+LIK A LE R+ TVVFDKTGTLT G+P VTDV+PV A ++A AS +A+A +LALAAA E +SEHP+ G+G+ GRV +GNRT G+ VD L A G+ R L GKT + V G+ +GVIAVAD K
Sbjct: 93 FGVLIKSAATLELLHRVDTVVFDKTGTLTVGRPAVTDVIPVGPAVGVRAAGGAAAEASGEMAAADEILALAAAAEQASEHPLGEAVVARAKERGLALPPMREFSTVA------------GQGIDAMTTDGRVLLGNRTLMDARGIDVDVL--APGVQR-LAAEGKTVIYVAFAGQVLGVIAVADVPK 264
BLAST of mRNA_H-elongata_contig156623.3691.1 vs. uniprot
Match: A0A534L6C7_9EURY (Heavy metal translocating P-type ATPase n=1 Tax=Euryarchaeota archaeon TaxID=2026739 RepID=A0A534L6C7_9EURY) HSP 1 Score: 90.1 bits (222), Expect = 3.270e-17 Identity = 70/182 (38.46%), Postives = 90/182 (49.45%), Query Frame = 1
Query: 115 GLLIKGGAALEAAQRITTVVFDKTGTLTEGKPIVTDVVPVQRGKAFEEALLSSAPASEAVASAVLALAAACESSSEHPVXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXPGRGVACQHPLGRVCVGNRTGVVDT---LGEADGLMRDLEEAGKTAVIVTLDGEAIGVIAVADADKE 651
GLLIKGG LE A ++TTVVFDKTGTLT+G+P VTDVVPV G EE +L LA + E SEHP+ PG+GV R+ +GNR + L A+ ++ +E+AGKTA+I+ +DG+ GVIAVAD KE
Sbjct: 365 GLLIKGGEYLEKAHKLTTVVFDKTGTLTKGRPSVTDVVPV--GAIPEEDILR--------------LAGSVEKGSEHPLGEAIVRTATARGLSPEDPKDFEAI------------PGQGVRAVIDDRRILLGNRMLMASASIPLHAAESILHAMEDAGKTAMILAVDGKVEGVIAVADTLKE 518
BLAST of mRNA_H-elongata_contig156623.3691.1 vs. uniprot
Match: A0A2V7B787_9BACT (HMA domain-containing protein n=5 Tax=unclassified Candidatus Rokubacteria TaxID=2760815 RepID=A0A2V7B787_9BACT) HSP 1 Score: 90.1 bits (222), Expect = 3.330e-17 Identity = 69/182 (37.91%), Postives = 88/182 (48.35%), Query Frame = 1
Query: 112 FGLLIKGGAALEAAQRITTVVFDKTGTLTEGKPIVTDVVPVQRGKAFEEALLSSAPASEAVASAVLALAAACESSSEHPVXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXPGRGVACQHPLGRVCVGNRTGVVDT---LGEADGLMRDLEEAGKTAVIVTLDGEAIGVIAVADADK 648
FG+LIK AALE R+ T+VFDKTGTLT G+P+VTDV+P+ APA+E +LALAAA E +SEHP+ PG+G+ GRV +GNRT + +G +R L GKTAV + G +GVIAVAD K
Sbjct: 409 FGVLIKSAAALELLHRVDTIVFDKTGTLTVGRPVVTDVIPI-------------APATE---DEILALAAAAEQASEHPLGEAIVARAKERGLALPPIVEFATV------------PGQGIDAMTTEGRVLLGNRTLMAARGIDVGPLAARVRGLAAEGKTAVHLAFAGRLLGVIAVADVLK 562
BLAST of mRNA_H-elongata_contig156623.3691.1 vs. uniprot
Match: A0A1H9ZVK5_9EURY (Cu+-exporting ATPase n=5 Tax=Methanococcoides TaxID=2225 RepID=A0A1H9ZVK5_9EURY) HSP 1 Score: 90.1 bits (222), Expect = 3.500e-17 Identity = 68/219 (31.05%), Postives = 98/219 (44.75%), Query Frame = 1
Query: 1 FLFALLFGVSVVVXXXXXXXXXXXXXXXXXXXXXXXXFGLLIKGGAALEAAQRITTVVFDKTGTLTEGKPIVTDVVPVQRGKAFEEALLSSAPASEAVASAVLALAAACESSSEHPVXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXPGRGVACQHPLGRVCVGNRTGVVDT---LGEADGLMRDLEEAGKTAVIVTLDGEAIGVIAVADADK 648
FLF+LL G++V+V G+LIKGG ALE +++I T+VFDKTGTLTEGKP++TD++ G+ E+ +LS LAA E SEHP+ PG GV + +G R + D + G + +LE GKT +++++DG A G++AVAD K
Sbjct: 554 FLFSLLIGITVLVISCPCAVGLATPVAIMVGTGKGAENGILIKGGEALEVSRKIDTIVFDKTGTLTEGKPVITDIIAF--GEHTEDEVLS--------------LAATAEKGSEHPLGEAIVNGAVDGNVPILDVSSFESI------------PGHGVKAMIKEQEILLGTRKLMADNNVDVSSLTGRLEELEHQGKTGMLISVDGNATGIVAVADTLK 744
BLAST of mRNA_H-elongata_contig156623.3691.1 vs. uniprot
Match: A0A062V3X2_9EURY (Heavy metal translocating P-type ATPase n=2 Tax=Candidatus Methanoperedens nitroreducens TaxID=1392998 RepID=A0A062V3X2_9EURY) HSP 1 Score: 90.1 bits (222), Expect = 3.500e-17 Identity = 69/220 (31.36%), Postives = 101/220 (45.91%), Query Frame = 1
Query: 1 FLFALLFGVSVVVXXXXXXXXXXXXXXXXXXXXXXXXFGLLIKGGAALEAAQRITTVVFDKTGTLTEGKPIVTDVVPVQRGKAFEEALLSSAPASEAVASAVLALAAACESSSEHPVXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXPGRGVACQHPLGRVCVGNRTGVVDT---LGEADGLMRDLEEAGKTAVIVTLDGEAIGVIAVADADKE 651
FLFALL ++V++ G+LIKGG ALE AQ++ T+VFDKTGTLT+G+P +TDVV ++ + + VL LAA E SEHP+ PG+GV ++ R+ +G R +++ + + + M +LE GKTA++V+ D E G+IAVAD KE
Sbjct: 553 FLFALLISITVLIISCPCAVGLATPTAIMVGTGKGAENGILIKGGEALERAQKLDTIVFDKTGTLTKGEPALTDVVAIKGTE-----------------NDVLKLAAIAEKGSEHPLGEAILNGAKARSIDVPDTDEFKAI------------PGKGVEVRYDGKRIMIGTRKLMIENGIDITQVNNKMEELEREGKTAMLVSKDNELAGIIAVADTLKE 743
BLAST of mRNA_H-elongata_contig156623.3691.1 vs. uniprot
Match: A0A1F7NV53_9BACT (Copper-translocating P-type ATPase n=6 Tax=unclassified Candidatus Rokubacteria TaxID=2760815 RepID=A0A1F7NV53_9BACT) HSP 1 Score: 89.4 bits (220), Expect = 6.140e-17 Identity = 71/189 (37.57%), Postives = 92/189 (48.68%), Query Frame = 1
Query: 112 FGLLIKGGAALEAAQRITTVVFDKTGTLTEGKPIVTDVVPVQRGKAFEEALLSSAPASEAVASAVLALAAACESSSEHPVXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXPGRGVACQHPLGRVCVGNRTGVVDTLGEADGLMRDLEEA----GKTAVIVTLDGEAIGVIAVADADKEVGSAA 666
FG+LIK AALE R T+VFDKTGTLT G+P VTDV+PV+ G A +E VLALAAA E SEHP+ PG+G+ P GRV +GNRT ++D G G + + +A GKTA+ + L G +G++A AD K +AA
Sbjct: 409 FGVLIKSAAALELLHRCDTIVFDKTGTLTVGRPSVTDVIPVE-GVAEDE---------------VLALAAAAEQGSEHPLGEAIVTRAKERGLALPPVAEFRTV------------PGQGIDAMAPEGRVLLGNRT-LMDMRGIEVGALAERAQALAREGKTAMYLALAGRPLGLVAAADVLKPEAAAA 568 The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig156623.3691.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-elongata_contig156623.3691.1 >prot_H-elongata_contig156623.3691.1 ID=prot_H-elongata_contig156623.3691.1|Name=mRNA_H-elongata_contig156623.3691.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=222bp FLFALLFGVSVVVVACPCALGLATPTAVMVGTGVGAGFGLLIKGGAALEAback to top mRNA from alignment at H-elongata_contig156623:349..1197+ Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-elongata_contig156623.3691.1 ID=mRNA_H-elongata_contig156623.3691.1|Name=mRNA_H-elongata_contig156623.3691.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=849bp|location=Sequence derived from alignment at H-elongata_contig156623:349..1197+ (Himanthalia elongata Himel1 dioecious)back to top Coding sequence (CDS) from alignment at H-elongata_contig156623:349..1197+ >mRNA_H-elongata_contig156623.3691.1 ID=mRNA_H-elongata_contig156623.3691.1|Name=mRNA_H-elongata_contig156623.3691.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=1332bp|location=Sequence derived from alignment at H-elongata_contig156623:349..1197+ (Himanthalia elongata Himel1 dioecious)back to top |