mRNA_H-elongata_contig156173.3666.1 (mRNA) Himanthalia elongata Himel1 dioecious
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Overview
Homology
BLAST of mRNA_H-elongata_contig156173.3666.1 vs. uniprot
Match: D7FNT8_ECTSI (Exportin-T n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FNT8_ECTSI) HSP 1 Score: 236 bits (601), Expect = 4.200e-69 Identity = 117/158 (74.05%), Postives = 131/158 (82.91%), Query Frame = 1
Query: 55 RYPSDFAFDPSDEDEGEEDMLRQQLRKHLVNAVRQAPELVLDFLCRALSSLPTPLSALPFPDLEAALRLIFHFGEGCGGMTGLNSR-----------------GELLRSGTFPQMVIALHESDVAQHKHPQVLILYFQLTVRYGKLLAEGPSHLLPKV 477
+YP DFAFDPSDEDEGEEDMLRQQLRKHLVNA+R APE VL+F+CRALSSLPTPLS LPFPDLEAALRLIFHFGEGCGG++ LNS ELLRSG FPQMV+ALH+SDVA+HKHPQV++LYFQLTVRY K+LA+GP HL+PKV
Sbjct: 419 KYPPDFAFDPSDEDEGEEDMLRQQLRKHLVNAIRNAPETVLEFICRALSSLPTPLSGLPFPDLEAALRLIFHFGEGCGGVSVLNSSXXXXXXXXXXXPAAPGAAELLRSGAFPQMVLALHDSDVARHKHPQVVMLYFQLTVRYSKMLADGPPHLIPKV 576
BLAST of mRNA_H-elongata_contig156173.3666.1 vs. uniprot
Match: A0A836CAL0_9STRA (Exportin-T n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CAL0_9STRA) HSP 1 Score: 166 bits (419), Expect = 1.940e-44 Identity = 83/141 (58.87%), Postives = 100/141 (70.92%), Query Frame = 1
Query: 55 RYPSDFAFDPSDEDEGEEDMLRQQLRKHLVNAVRQAPELVLDFLCRALSSLPTPLSALPFPDLEAALRLIFHFGEGCGGMTGLNSRGELLRSGTFPQMVIALHESDVAQHKHPQVLILYFQLTVRYGKLLAEGPSHLLPKV 477
++P+DF FD DE++GEE+ LR LRK LVN R APELVL F C ALS+LP+PLSALP+P EAALRL++HF EGC + LL G FPQMV ALH SD+A+H HPQVLILYF + VRY K+L G + L P V
Sbjct: 427 QFPADFEFDAEDEEDGEEEALRGALRKVLVNTCRAAPELVLRFACEALSALPSPLSALPWPAAEAALRLLYHFSEGCASAAAAANAQALLHEGAFPQMVAALHRSDIARHPHPQVLILYFDIAVRYVKVLRGGGAELTPLV 567
BLAST of mRNA_H-elongata_contig156173.3666.1 vs. uniprot
Match: A0A7S4M7Y7_9STRA (Exportin-T (Fragment) n=1 Tax=Odontella aurita TaxID=265563 RepID=A0A7S4M7Y7_9STRA) HSP 1 Score: 124 bits (310), Expect = 8.290e-30 Identity = 68/138 (49.28%), Postives = 90/138 (65.22%), Query Frame = 1
Query: 55 RYPSDFAFDPSDEDEGEEDMLRQQLRKHLVNAVRQAPELVLDFLCRALSS-LPTPLSALPFPDLEAALRLIFHFGEGCGGMTGLNSRGELLRSGTFPQMVIALHESDVAQHKHPQVLILYFQLTVRYGKLLAEGPSHL 465
RYP DFAFDP DEDE EE++ R +LRK +AVR P+ ++FL LSS L PLS+ P PD+EAALRL++H EG G + L + G F M+I LH+SDV+ H H +VL+LY+ ++VRY LL + P L
Sbjct: 161 RYPPDFAFDPEDEDEAEEEVYRSKLRKLHRDAVRSRPDESMEFLSSTLSSRLSAPLSSAPMPDVEAALRLVYHHCEGVRPPPGART---LAKDGRFRSMLIGLHDSDVSSHPHGEVLMLYYDVSVRYHPLLRDRPDLL 295
BLAST of mRNA_H-elongata_contig156173.3666.1 vs. uniprot
Match: A0A448ZS68_9STRA (Exportin-T n=1 Tax=Pseudo-nitzschia multistriata TaxID=183589 RepID=A0A448ZS68_9STRA) HSP 1 Score: 114 bits (286), Expect = 1.510e-26 Identity = 62/141 (43.97%), Postives = 88/141 (62.41%), Query Frame = 1
Query: 55 RYPSDFAFDPSDEDEGEEDMLRQQLRKHLVNAVRQAPELVLDFLCRALSSLPTPLSALPFPDLEAALRLIFHFGEGCGGMTGLNSRGELLRSGTFPQMVIALHESDVAQHKHPQVLILYFQLTVRYGKLLAEGPSHLLPKV 477
RYP DF +D D+DE EE+M R +LRK VR P+L L F C+ LS LP PLS P P++E A+ L++ + EG G+ ++R+ TF +++ LH SD+ +H H ++LILY++ +VRY LL E S LL KV
Sbjct: 441 RYPPDFQYDFEDDDEAEEEMYRTELRKLNKKFVRANPDLCLQFTCQILSQLPLPLSTAPTPNVEVAISLVYQYCEGIRPPPGMKV---VMRNETFCNLLVGLHTSDITEHPHREILILYYETSVRYYPLLKER-SDLLQKV 577
BLAST of mRNA_H-elongata_contig156173.3666.1 vs. uniprot
Match: B8C3C8_THAPS (Exportin-T n=1 Tax=Thalassiosira pseudonana TaxID=35128 RepID=B8C3C8_THAPS) HSP 1 Score: 113 bits (283), Expect = 3.880e-26 Identity = 67/156 (42.95%), Postives = 86/156 (55.13%), Query Frame = 1
Query: 1 FPSSTSLLRPKSSQSRLSRYPSDFAFDPSDEDEGEEDMLRQQLRKHLVNAVRQAPELVLDFLCRALSSLPTPLSALPFPDLEAALRLIFHFGEGCGGMTGLNSRGELLRSGTFPQMVIALHESDVAQHKHPQVLILYFQLTVRYGKLLAEGPSHLL 468
PS L R S +YPS F F EE++ R LRK VR P++VL F+ +LSSLP PLS + D+E ALRL+ H+GEG G + LR F +MV ALH SDV+ H H +VL+LY+ L+VRY LL + P LL
Sbjct: 594 IPSDRLLQRVLSILQERMKYPSSFDFXXXXXXXAEEEVYRTHLRKLYQRIVRFKPQMVLHFMAASLSSLPQPLSMVSTSDMEVALRLVHHYGEGRRPAPGAKTA---LRDAQFREMVTALHRSDVSSHPHREVLLLYYDLSVRYASLLKDSPPELL 746
BLAST of mRNA_H-elongata_contig156173.3666.1 vs. uniprot
Match: K0SEF1_THAOC (Exportin-T n=1 Tax=Thalassiosira oceanica TaxID=159749 RepID=K0SEF1_THAOC) HSP 1 Score: 106 bits (264), Expect = 1.370e-23 Identity = 61/137 (44.53%), Postives = 84/137 (61.31%), Query Frame = 1
Query: 58 YPSDFAFDPSDEDEGEEDMLRQQLRKHL-VNAVRQAPELVLDFLCRALSSLPTPLSALPFPDLEAALRLIFHFGEGCGGMTGLNSRGELLRSGTFPQMVIALHESDVAQHKHPQVLILYFQLTVRYGKLLAEGPSHL 465
YPSDF FD DE+E E+M R QLRK L V VR V F+ +LS+LP PLS D+E ALRL++H+ EG G ++ L + +F +++IALH+SDV H H +VL+LY+ + VRY +L + P L
Sbjct: 471 YPSDFRFDYEDEEEXXEEMYRAQLRKQLFVRIVRLRKTAVEAFMGVSLSALPQPLSRAQTSDIEVALRLVYHYAEGRRPPPG--AKTALKQDVSFREIIIALHQSDVTGHPHREVLLLYYDIAVRYATVLKDSPDLL 605
BLAST of mRNA_H-elongata_contig156173.3666.1 vs. uniprot
Match: A0A7S0A169_9STRA (Exportin-T (Fragment) n=1 Tax=Rhizosolenia setigera TaxID=3005 RepID=A0A7S0A169_9STRA) HSP 1 Score: 104 bits (260), Expect = 4.640e-23 Identity = 60/147 (40.82%), Postives = 87/147 (59.18%), Query Frame = 1
Query: 55 RYPSDFAFDPSDEDEGEEDMLRQQLRKHLVNAVRQAP-ELVLDFLCRALSSLPTPLSALPFPDLEAALRLIFHFGEGCGGMTGLNSRGE----LLRSGTFPQMVIALHE-SDVAQHKHPQVLILYFQLTVRYGKLLAEGPSHLLPKV 477
+YPSDF FD +D+DE +E R LRK + VR P +L + FLC+ ++LP PLS P LEA+LRL+FHF EG T +S+ + + F +V+AL+ SD+ +H H ++ +LYF + VRY L + P LLP +
Sbjct: 486 KYPSDFQFDYNDDDEADEQAFRFNLRKLYIQMVRTYPIDLTIRFLCQVFANLPMPLSTCPIMSLEASLRLLFHFSEGIRPSTYKSSKSASAYLMNKIDAFHDLVVALYSNSDLVEHSHDEITLLYFDVAVRYLDLFKKHPE-LLPNL 631
BLAST of mRNA_H-elongata_contig156173.3666.1 vs. uniprot
Match: A0A7S1D0W2_CYCTE (Exportin-T (Fragment) n=1 Tax=Cyclophora tenuis TaxID=216820 RepID=A0A7S1D0W2_CYCTE) HSP 1 Score: 95.9 bits (237), Expect = 2.350e-22 Identity = 49/86 (56.98%), Postives = 59/86 (68.60%), Query Frame = 1
Query: 46 RLSRYPSDFAFDPSDEDEGEEDMLRQQLRKHLVNAVRQAPELVLDFLCRALSSLPTPLSALPFPDLEAALRLIFHFGEGCGGMTGL 303
R SRYP+DF FD DEDE EE++ R ++RK VR A EL L FLC AL SLP PLS P PD+EAA+RL++H+GEG GL
Sbjct: 46 RQSRYPADFQFDHEDEDEAEEELYRSEMRKLYRKLVRVAAELCLQFLCEALGSLPMPLSTAPTPDIEAAVRLVYHYGEGVRPPPGL 131
BLAST of mRNA_H-elongata_contig156173.3666.1 vs. uniprot
Match: A0A7S2DJX0_9STRA (Exportin-T (Fragment) n=1 Tax=Dictyocha speculum TaxID=35687 RepID=A0A7S2DJX0_9STRA) HSP 1 Score: 98.6 bits (244), Expect = 5.310e-21 Identity = 53/122 (43.44%), Postives = 74/122 (60.66%), Query Frame = 1
Query: 94 DEGEEDMLRQQLRKHLVNAVRQAPELVLDFLCRALSSLPTPLSALPFPDLEAALRLIFHFGEGCGGMTGLNSRGELLRSGTFPQMVIALHESDVAQHKHPQVLILYFQLTVRYGKLLAEGPS 459
+E EE++ R ++R+ + +R PEL L+F+C LS L PLS L +P EAALRL++HFGEG G L +SG FP ++ A+H+SD+ H H V LY +L+VRY K L P
Sbjct: 138 EEAEEEVHRGRIRRLFLKCIRVVPELSLEFVCSMLSELQPPLSDLRWPRAEAALRLVYHFGEGLGP-----KNQTLCQSGAFPTVLAAVHQSDIGMHPHWCVKTLYLELSVRYVKRLEGQPE 254
BLAST of mRNA_H-elongata_contig156173.3666.1 vs. uniprot
Match: A0A7S2DK11_9STRA (Exportin-T n=1 Tax=Dictyocha speculum TaxID=35687 RepID=A0A7S2DK11_9STRA) HSP 1 Score: 98.6 bits (244), Expect = 6.310e-21 Identity = 53/122 (43.44%), Postives = 74/122 (60.66%), Query Frame = 1
Query: 94 DEGEEDMLRQQLRKHLVNAVRQAPELVLDFLCRALSSLPTPLSALPFPDLEAALRLIFHFGEGCGGMTGLNSRGELLRSGTFPQMVIALHESDVAQHKHPQVLILYFQLTVRYGKLLAEGPS 459
+E EE++ R ++R+ + +R PEL L+F+C LS L PLS L +P EAALRL++HFGEG G L +SG FP ++ A+H+SD+ H H V LY +L+VRY K L P
Sbjct: 138 EEAEEEVHRGRIRRLFLKCIRVVPELSLEFVCSMLSELQPPLSDLRWPRAEAALRLVYHFGEGLGP-----KNQTLCQSGAFPTVLAAVHQSDIGMHPHWCVKTLYLELSVRYVKRLEGQPE 254 The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig156173.3666.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-elongata_contig156173.3666.1 >prot_H-elongata_contig156173.3666.1 ID=prot_H-elongata_contig156173.3666.1|Name=mRNA_H-elongata_contig156173.3666.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=162bp FPSSTSLLRPKSSQSRLSRYPSDFAFDPSDEDEGEEDMLRQQLRKHLVNAback to top mRNA from alignment at H-elongata_contig156173:76..1020+ Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-elongata_contig156173.3666.1 ID=mRNA_H-elongata_contig156173.3666.1|Name=mRNA_H-elongata_contig156173.3666.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=945bp|location=Sequence derived from alignment at H-elongata_contig156173:76..1020+ (Himanthalia elongata Himel1 dioecious)back to top Coding sequence (CDS) from alignment at H-elongata_contig156173:76..1020+ >mRNA_H-elongata_contig156173.3666.1 ID=mRNA_H-elongata_contig156173.3666.1|Name=mRNA_H-elongata_contig156173.3666.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=972bp|location=Sequence derived from alignment at H-elongata_contig156173:76..1020+ (Himanthalia elongata Himel1 dioecious)back to top |