mRNA_H-elongata_contig155610.3644.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	mRNA_H-elongata_contig155610.3644.1
Unique Name	mRNA_H-elongata_contig155610.3644.1
Type	mRNA
Organism	Himanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)

Homology

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BLAST of mRNA_H-elongata_contig155610.3644.1 vs. uniprot
Match: A0A7S3URR6_HETAK (Hypothetical protein n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3URR6_HETAK)

HSP 1 Score: 62.8 bits (151), Expect = 3.630e-11
Identity = 32/44 (72.73%), Postives = 35/44 (79.55%), Query Frame = 1

Query:    7 TMHAENGKLALETLRRRSNQIDLVLLDIVMPVMDGVEFLNIVKA 138
            TMHAENGK+AL+ LRR     DLVLLDIVMPVMDGVE L  +KA
Sbjct:   52 TMHAENGKVALQLLRRFPGDFDLVLLDIVMPVMDGVELLTTMKA 95

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BLAST of mRNA_H-elongata_contig155610.3644.1 vs. uniprot
Match: A0A835ZEX5_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZEX5_9STRA)

HSP 1 Score: 56.6 bits (135), Expect = 3.790e-8
Identity = 30/46 (65.22%), Postives = 36/46 (78.26%), Query Frame = 1

Query:    1 HATMHAENGKLALETLRRRSNQIDLVLLDIVMPVMDGVEFLNIVKA 138
            H T+HA+NG  ALE LR    ++DLVLLDIVMPVMDGVE L I++A
Sbjct:  124 HRTVHADNGLNALEMLRS-GQEVDLVLLDIVMPVMDGVELLTILQA 168

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BLAST of mRNA_H-elongata_contig155610.3644.1 vs. uniprot
Match: A0A1B2I555_9BACT (Uncharacterized protein n=2 Tax=Cloacibacillus porcorum TaxID=1197717 RepID=A0A1B2I555_9BACT)

HSP 1 Score: 55.1 bits (131), Expect = 1.460e-7
Identity = 25/46 (54.35%), Postives = 34/46 (73.91%), Query Frame = 1

Query:    1 HATMHAENGKLALETLRRRSNQIDLVLLDIVMPVMDGVEFLNIVKA 138
            HAT  AENG  ALE L+R   ++ ++LLD++MPVMDG E L ++KA
Sbjct:  271 HATAEAENGAAALEYLKRHGRKVKIILLDLLMPVMDGFELLALIKA 316

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BLAST of mRNA_H-elongata_contig155610.3644.1 vs. uniprot
Match: UPI001BBE1DA8 (Response regulator n=2 Tax=Lachnospiraceae TaxID=186803 RepID=UPI001BBE1DA8)

HSP 1 Score: 55.1 bits (131), Expect = 1.460e-7
Identity = 26/46 (56.52%), Postives = 34/46 (73.91%), Query Frame = 1

Query:    1 HATMHAENGKLALETLRRRSNQIDLVLLDIVMPVMDGVEFLNIVKA 138
            + T+ AENGK+ LE L R    + L+LLDIVMPVM+G EFL+ +KA
Sbjct:   28 YETLEAENGKVGLEILEREKEAVSLILLDIVMPVMNGYEFLDALKA 73

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BLAST of mRNA_H-elongata_contig155610.3644.1 vs. uniprot
Match: UPI001FD477C3 (EAL domain-containing protein n=1 Tax=Cuneatibacter sp. NSJ-177 TaxID=2931401 RepID=UPI001FD477C3)

HSP 1 Score: 54.7 bits (130), Expect = 1.990e-7
Identity = 26/46 (56.52%), Postives = 35/46 (76.09%), Query Frame = 1

Query:    1 HATMHAENGKLALETLRRRSNQIDLVLLDIVMPVMDGVEFLNIVKA 138
            +  + AENG++AL  LR +  +I L+LLDIVMPVMDG  FL+I+KA
Sbjct:   28 YTVLEAENGEVALSILREQREEISLILLDIVMPVMDGYTFLSIMKA 73

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BLAST of mRNA_H-elongata_contig155610.3644.1 vs. uniprot
Match: UPI0011819A74 (EAL domain-containing protein n=1 Tax=Oscillibacter ruminantium TaxID=1263547 RepID=UPI0011819A74)

HSP 1 Score: 54.7 bits (130), Expect = 1.990e-7
Identity = 24/43 (55.81%), Postives = 34/43 (79.07%), Query Frame = 1

Query:   10 MHAENGKLALETLRRRSNQIDLVLLDIVMPVMDGVEFLNIVKA 138
            + AENG+ AL+ L+   NQ+D++LLD++MPVMDG EFL I +A
Sbjct:  745 LEAENGQQALDVLKEYQNQVDIILLDLMMPVMDGTEFLEIKRA 787

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BLAST of mRNA_H-elongata_contig155610.3644.1 vs. uniprot
Match: K2F1T5_9BACT (Response regulatory domain-containing protein n=1 Tax=uncultured bacterium TaxID=77133 RepID=K2F1T5_9BACT)

HSP 1 Score: 52.4 bits (124), Expect = 2.660e-7
Identity = 25/42 (59.52%), Postives = 33/42 (78.57%), Query Frame = 1

Query:   10 MHAENGKLALETLRRRSNQIDLVLLDIVMPVMDGVEFLNIVK 135
            + A+NGK ALE L R+ ++I L++LDIVMPVMDG EFL  +K
Sbjct:   33 LQAKNGKEALEWLDRKGSEIKLIILDIVMPVMDGFEFLETIK 74

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BLAST of mRNA_H-elongata_contig155610.3644.1 vs. uniprot
Match: A0A355JDM4_9FIRM (Stage 0 sporulation protein A homolog n=2 Tax=Eubacteriales TaxID=186802 RepID=A0A355JDM4_9FIRM)

HSP 1 Score: 52.4 bits (124), Expect = 2.660e-7
Identity = 26/46 (56.52%), Postives = 33/46 (71.74%), Query Frame = 1

Query:    1 HATMHAENGKLALETLRRRSNQIDLVLLDIVMPVMDGVEFLNIVKA 138
            +  + AENG+ ALE  RR    I ++LLD+VMPVMDG  FL+IVKA
Sbjct:   35 YEVLEAENGQKALEIARRYKEGISIILLDLVMPVMDGYTFLSIVKA 80

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BLAST of mRNA_H-elongata_contig155610.3644.1 vs. uniprot
Match: K2G5H1_9BACT (Response regulatory domain-containing protein n=1 Tax=uncultured bacterium TaxID=77133 RepID=K2G5H1_9BACT)

HSP 1 Score: 52.4 bits (124), Expect = 2.710e-7
Identity = 26/42 (61.90%), Postives = 33/42 (78.57%), Query Frame = 1

Query:   10 MHAENGKLALETLRRRSNQIDLVLLDIVMPVMDGVEFLNIVK 135
            + A+NGK ALE L R+S +I L++LDIVMPVMDG EFL  +K
Sbjct:   34 LQAKNGKEALEWLDRKSAEIKLIILDIVMPVMDGFEFLESIK 75

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BLAST of mRNA_H-elongata_contig155610.3644.1 vs. uniprot
Match: A0A0M2NH98_9FIRM (Stage 0 sporulation protein A homolog n=2 Tax=Christensenella hongkongensis TaxID=270498 RepID=A0A0M2NH98_9FIRM)

HSP 1 Score: 54.3 bits (129), Expect = 2.730e-7
Identity = 26/46 (56.52%), Postives = 34/46 (73.91%), Query Frame = 1

Query:    1 HATMHAENGKLALETLRRRSNQIDLVLLDIVMPVMDGVEFLNIVKA 138
            +  + AENG+ ALE L++    I L+LLDIVMPVMDG  FL+I+KA
Sbjct:   64 YQVLEAENGQAALEVLKKHHEDISLILLDIVMPVMDGYTFLSIMKA 109

The following BLAST results are available for this feature:

BLAST of mRNA_H-elongata_contig155610.3644.1 vs. uniprot

BLAST of mRNA_H-elongata_contig155610.3644.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25


Match Name	E-value	Identity	Description
A0A7S3URR6_HETAK	3.630e-11	72.73	Hypothetical protein n=1 Tax=Heterosigma akashiwo ...	[more]
A0A835ZEX5_9STRA	3.790e-8	65.22	Uncharacterized protein n=1 Tax=Tribonema minus Ta...	[more]
A0A1B2I555_9BACT	1.460e-7	54.35	Uncharacterized protein n=2 Tax=Cloacibacillus por...	[more]
UPI001BBE1DA8	1.460e-7	56.52	Response regulator n=2 Tax=Lachnospiraceae TaxID=1...	[more]
UPI001FD477C3	1.990e-7	56.52	EAL domain-containing protein n=1 Tax=Cuneatibacte...	[more]
UPI0011819A74	1.990e-7	55.81	EAL domain-containing protein n=1 Tax=Oscillibacte...	[more]
K2F1T5_9BACT	2.660e-7	59.52	Response regulatory domain-containing protein n=1 ...	[more]
A0A355JDM4_9FIRM	2.660e-7	56.52	Stage 0 sporulation protein A homolog n=2 Tax=Euba...	[more]
K2G5H1_9BACT	2.710e-7	61.90	Response regulatory domain-containing protein n=1 ...	[more]
A0A0M2NH98_9FIRM	2.730e-7	56.52	Stage 0 sporulation protein A homolog n=2 Tax=Chri...	[more]

Pages

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
H-elongata_contig155610	contig	H-elongata_contig155610:1124..1261 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Diamond blastx: OGS1.0 vs UniRef90	2022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious	2021-02-24

Properties


Property Name	Value
Hectar predicted targeting category	no signal peptide or anchor
Ec32 ortholog description	Response receiver
Ec32 ortholog	Ec-08_005640.1
Exons	1
Model size	138
Cds size	129
Stop	0
Start	1

Relationships

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
1622929918.3246238-CDS-H-elongata_contig155610:1123..1252	1622929918.3246238-CDS-H-elongata_contig155610:1123..1252	Himanthalia elongata Himel1 dioecious	CDS	H-elongata_contig155610 1124..1252 -
1691679207.9371607-CDS-H-elongata_contig155610:1123..1252	1691679207.9371607-CDS-H-elongata_contig155610:1123..1252	Himanthalia elongata Himel1 dioecious	CDS	H-elongata_contig155610 1124..1252 -

The following UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
1622929918.3393464-UTR-H-elongata_contig155610:1252..1261	1622929918.3393464-UTR-H-elongata_contig155610:1252..1261	Himanthalia elongata Himel1 dioecious	UTR	H-elongata_contig155610 1253..1261 -
1691679207.9462545-UTR-H-elongata_contig155610:1252..1261	1691679207.9462545-UTR-H-elongata_contig155610:1252..1261	Himanthalia elongata Himel1 dioecious	UTR	H-elongata_contig155610 1253..1261 -

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
mRNA_H-elongata_contig155610.3644.1	prot_H-elongata_contig155610.3644.1	Himanthalia elongata Himel1 dioecious	polypeptide	H-elongata_contig155610 1124..1252 -

Sequences

The following sequences are available for this feature:

protein sequence
mRNA from alignment at H-elongata_contig155610:1124..1261-
coding sequence from alignment at H-elongata_contig155610:1124..1261-

protein sequence of mRNA_H-elongata_contig155610.3644.1

>prot_H-elongata_contig155610.3644.1 ID=prot_H-elongata_contig155610.3644.1|Name=mRNA_H-elongata_contig155610.3644.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=43bp
MHAENGKLALETLRRRSNQIDLVLLDIVMPVMDGVEFLNIVKA

mRNA from alignment at H-elongata_contig155610:1124..1261-

Legend: UTRCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_H-elongata_contig155610.3644.1 ID=mRNA_H-elongata_contig155610.3644.1|Name=mRNA_H-elongata_contig155610.3644.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=138bp|location=Sequence derived from alignment at H-elongata_contig155610:1124..1261- (Himanthalia elongata Himel1 dioecious)
CACGCTACCATGCACGCGGAGAACGGGAAGTTGGCCTTGGAGACATTGCG
ACGGAGATCCAATCAGATCGATTTAGTCCTGCTGGACATCGTGATGCCCG
TCATGGATGGCGTGGAATTTCTCAACATCGTGAAGGCA

Coding sequence (CDS) from alignment at H-elongata_contig155610:1124..1261-

>mRNA_H-elongata_contig155610.3644.1 ID=mRNA_H-elongata_contig155610.3644.1|Name=mRNA_H-elongata_contig155610.3644.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=258bp|location=Sequence derived from alignment at H-elongata_contig155610:1124..1261- (Himanthalia elongata Himel1 dioecious)
ATGCACGCGGAGAACGGGAAGTTGGCCTTGGAGACATTGCGACGGAGATC
CAATCAGATCGATTTAGTCCTGCTGGACATCGTGATGCCCGTCATGGATG
GCGTGGAATTTCTCAACATCGTGAAGGCAATGCACGCGGAGAACGGGAAG
TTGGCCTTGGAGACATTGCGACGGAGATCCAATCAGATCGATTTAGTCCT
GCTGGACATCGTGATGCCCGTCATGGATGGCGTGGAATTTCTCAACATCG
TGAAGGCA