mRNA_H-elongata_contig15525.3616.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig15525.3616.1
Unique NamemRNA_H-elongata_contig15525.3616.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig15525.3616.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig15525contigH-elongata_contig15525:5797..6544 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size652
Cds size651
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929915.2363799-CDS-H-elongata_contig15525:5797..61451622929915.2363799-CDS-H-elongata_contig15525:5797..6145Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig15525 5798..6145 -
1691679206.866084-CDS-H-elongata_contig15525:5797..61451691679206.866084-CDS-H-elongata_contig15525:5797..6145Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig15525 5798..6145 -
1622929915.2500482-CDS-H-elongata_contig15525:6241..65441622929915.2500482-CDS-H-elongata_contig15525:6241..6544Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig15525 6242..6544 -
1691679206.8777876-CDS-H-elongata_contig15525:6241..65441691679206.8777876-CDS-H-elongata_contig15525:6241..6544Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig15525 6242..6544 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig15525.3616.1prot_H-elongata_contig15525.3616.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig15525 5798..6544 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig15525.3616.1

>prot_H-elongata_contig15525.3616.1 ID=prot_H-elongata_contig15525.3616.1|Name=mRNA_H-elongata_contig15525.3616.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=217bp
AEGQGGSIIAEECSSDASGSDKTVSCGDKVVDIGSSSNIGGDIVIGIGTE
GNDGNAVAVAGSNAIGSSSGNVIGSVGVGNGVGASTDSHRGVDDCVISNK
TIPAAGAPPRGFSSPAAKITLAEGRSAIGEGDIAVFNTSKAEEADGTLSP
AGSMASSSEETKAFEKVAWPVPRVVPSVWMPTTAAPAALPPKKSATKARP
TPKDAAASAVEVEAGAG
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mRNA from alignment at H-elongata_contig15525:5797..6544-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig15525.3616.1 ID=mRNA_H-elongata_contig15525.3616.1|Name=mRNA_H-elongata_contig15525.3616.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=748bp|location=Sequence derived from alignment at H-elongata_contig15525:5797..6544- (Himanthalia elongata Himel1 dioecious)
GCCGAGGGTCAAGGCGGTAGCATCATCGCCGAGGAGTGCAGCAGCGATGC
CTCTGGCAGCGACAAAACGGTTAGCTGTGGCGACAAGGTTGTCGATATTG
GCTCCAGCAGCAACATAGGTGGTGACATCGTGATCGGAATAGGTACCGAG
GGCAACGATGGGAATGCCGTTGCCGTCGCGGGCAGTAACGCAATCGGCAG
CAGCAGTGGCAATGTCATCGGCAGCGTCGGAGTTGGTAACGGCGTCGGTG
CCAGCACCGACAGTCACCGTGGCGTCGACGACTGTGTCATCAGCAACAAG
ACCGTCTTTGGTACGAGTAGCTCAGCTAGCGGAGGCGGTGGTGATGGTGC
AACGGAATGGAACGGCCCTTATATGGCGAGCCACGAGGCCGGGAAGAAGA
TTCCCGCCGCCGGCGCACCTCCTCGAGGTTTCAGCTCTCCGGCGGCGAAG
ATCACCCTGGCGGAAGGACGATCAGCAATAGGAGAAGGGGATATCGCGGT
GTTCAACACGTCCAAGGCAGAGGAGGCTGACGGAACCCTGTCGCCCGCCG
GGAGCATGGCGTCTTCGTCCGAAGAGACGAAGGCGTTTGAGAAAGTTGCT
TGGCCCGTGCCCCGCGTGGTGCCCTCCGTGTGGATGCCGACAACCGCAGC
GCCAGCAGCACTGCCACCGAAGAAATCAGCGACGAAAGCGCGGCCTACTC
CGAAGGATGCGGCCGCCTCGGCCGTGGAAGTGGAGGCGGGGGCCGGGG
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Coding sequence (CDS) from alignment at H-elongata_contig15525:5797..6544-

>mRNA_H-elongata_contig15525.3616.1 ID=mRNA_H-elongata_contig15525.3616.1|Name=mRNA_H-elongata_contig15525.3616.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=1302bp|location=Sequence derived from alignment at H-elongata_contig15525:5797..6544- (Himanthalia elongata Himel1 dioecious)
GCCGAGGGTCAAGGCGGTAGCATCATCGCCGAGGAGTGCAGCAGCGATGC
CTCTGGCAGCGACAAAACGGTTAGCTGTGGCGACAAGGTTGTCGATATTG
GCTCCAGCAGCAACATAGGTGGTGACATCGTGATCGGAATAGGTACCGAG
GGCAACGATGGGAATGCCGTTGCCGTCGCGGGCAGTAACGCAATCGGCAG
CAGCAGTGGCAATGTCATCGGCAGCGTCGGAGTTGGTAACGGCGTCGGTG
CCAGCACCGACAGTCACCGTGGCGTCGACGACTGTGTCATCAGCAACAAG
ACCGCCGAGGGTCAAGGCGGTAGCATCATCGCCGAGGAGTGCAGCAGCGA
TGCCTCTGGCAGCGACAAAACGGTTAGCTGTGGCGACAAGGTTGTCGATA
TTGGCTCCAGCAGCAACATAGGTGGTGACATCGTGATCGGAATAGGTACC
GAGGGCAACGATGGGAATGCCGTTGCCGTCGCGGGCAGTAACGCAATCGG
CAGCAGCAGTGGCAATGTCATCGGCAGCGTCGGAGTTGGTAACGGCGTCG
GTGCCAGCACCGACAGTCACCGTGGCGTCGACGACTGTGTCATCAGCAAC
AAGACCATTCCCGCCGCCGGCGCACCTCCTCGAGGTTTCAGCTCTCCGGC
GGCGAAGATCACCCTGGCGGAAGGACGATCAGCAATAGGAGAAGGGGATA
TCGCGGTGTTCAACACGTCCAAGGCAGAGGAGGCTGACGGAACCCTGTCG
CCCGCCGGGAGCATGGCGTCTTCGTCCGAAGAGACGAAGGCGTTTGAGAA
AGTTGCTTGGCCCGTGCCCCGCGTGGTGCCCTCCGTGTGGATGCCGACAA
CCGCAGCGCCAGCAGCACTGCCACCGAAGAAATCAGCGACGAAAGCGCGG
CCTACTCCGAAGGATGCGGCCGCCTCGGCCGTGGAAGTGGAGGCGGGGGC
CGGGATTCCCGCCGCCGGCGCACCTCCTCGAGGTTTCAGCTCTCCGGCGG
CGAAGATCACCCTGGCGGAAGGACGATCAGCAATAGGAGAAGGGGATATC
GCGGTGTTCAACACGTCCAAGGCAGAGGAGGCTGACGGAACCCTGTCGCC
CGCCGGGAGCATGGCGTCTTCGTCCGAAGAGACGAAGGCGTTTGAGAAAG
TTGCTTGGCCCGTGCCCCGCGTGGTGCCCTCCGTGTGGATGCCGACAACC
GCAGCGCCAGCAGCACTGCCACCGAAGAAATCAGCGACGAAAGCGCGGCC
TACTCCGAAGGATGCGGCCGCCTCGGCCGTGGAAGTGGAGGCGGGGGCCG
GG
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