mRNA_H-elongata_contig15474.3596.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig15474.3596.1
Unique NamemRNA_H-elongata_contig15474.3596.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig15474.3596.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig15474contigH-elongata_contig15474:3940..7725 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons3
Model size213
Cds size213
Stop0
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig15474.3596.1prot_H-elongata_contig15474.3596.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig15474 3940..7725 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929913.3657281-CDS-H-elongata_contig15474:3939..40061622929913.3657281-CDS-H-elongata_contig15474:3939..4006Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig15474 3940..4006 +
1691679206.0481026-CDS-H-elongata_contig15474:3939..40061691679206.0481026-CDS-H-elongata_contig15474:3939..4006Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig15474 3940..4006 +
1622929913.3838573-CDS-H-elongata_contig15474:6360..64291622929913.3838573-CDS-H-elongata_contig15474:6360..6429Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig15474 6361..6429 +
1691679206.0615432-CDS-H-elongata_contig15474:6360..64291691679206.0615432-CDS-H-elongata_contig15474:6360..6429Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig15474 6361..6429 +
1622929913.4003854-CDS-H-elongata_contig15474:7648..77251622929913.4003854-CDS-H-elongata_contig15474:7648..7725Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig15474 7649..7725 +
1691679206.0761461-CDS-H-elongata_contig15474:7648..77251691679206.0761461-CDS-H-elongata_contig15474:7648..7725Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig15474 7649..7725 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig15474.3596.1

>prot_H-elongata_contig15474.3596.1 ID=prot_H-elongata_contig15474.3596.1|Name=mRNA_H-elongata_contig15474.3596.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=71bp
PTPAPVDPSTPAPVTPTPEPVTVPTPAPVDPSTPAPVTPTPKPVSAETPA
TVDPPTPAPVTPTPKPVTGEK
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mRNA from alignment at H-elongata_contig15474:3940..7725+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig15474.3596.1 ID=mRNA_H-elongata_contig15474.3596.1|Name=mRNA_H-elongata_contig15474.3596.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=3786bp|location=Sequence derived from alignment at H-elongata_contig15474:3940..7725+ (Himanthalia elongata Himel1 dioecious)
CCAACGCCTGCTCCTGTGGATCCATCCACACCTGCACCGGTAACTCCCAC
ACCTGAGCCTGTTACTGGTGAGAGGATCACGTAAATGTGCTATCGTGGTA
CCGCGTAAGGCATCCGCCGTCACGGGACAAAGTAGATGGTTATATCTAAT
TTGGACCGCTTCATGCTTTACCTCTCGCCATCAGGTCTGACGAGCCTTCT
GACTCCCATAGTTTTCTTTCTTTATATGAAAACGCTCAAATCATGTTTAT
TTCCTGTGAACCCTTCTACGATAGCGCCGACCACTTCTACACACAGGCAT
ATACTTTGCAGTGCTTCTACGACAGAATCAGTATTATATAAGGACCCCAC
AGAGGAGCAGGGCAACTAGGTTTGATTTAATTCGAAGCGCTTCACGCCCC
ATTTATTCGCATCGGGCCTACCAAGCCTTCTGATTCTTTGTATTGTATCC
CTTTCTCCCTAACAGCCTCAACACGTGCTCCTATAGACGCTTCTACGTTG
ACACCGTTGCTCCGACGCCTACGTCTAGGCCTGCTGAGAAAGTAATGTGC
TGATTCATTTAATATTGCTCCTTGAAAAATTAGTGGTCGTCGGGTAAGGT
GGGTGGTTTTAGCTTATTCAGAGCGTTTAACGCTCAAGCGATTCTTTCCA
TAGTCTTACAAGCCTTCTTATTTCCATCATTACAACTATATCTTACCAAT
AGCCCCCACGGAGGCTCCTGTCGAACCAGCTACGCCTGCGCCGTTGACTC
CCACACCTAAGCCTGTTTTTGGTGAGGCTTCATGCGGTGATTCATATTTT
ATCGCTGCGTAAGACATTCGCTGTCACGGGACAATGACAGCAGGTTTACG
CCATTAGGAGCGCGTTTCATGGTTCAACTCTTCTTCGTAGATTTCATAAA
CGTTCTGATTCCGAGCACTACTTCCATCTTACTGCGATACGTCTGACGGA
CGCTCAAGTCGGTCCTCCTGCGTTAGCGCTTGTGACGTCCACACACCAAC
CTGTTCCCTGCAGTGGACCCTCTAGGGGATTCGGATTGGTTTGATGACTA
AAGCTTCTAACGTTGCTGGACAAGATAATGTGAGCTCATTAGGAGCGCCT
CATACTCCGCACATAGTGCGGCGAGCTTTTATATTTTCATTAATATCTCC
CCTCTCCCCAACAATTCAGCCGTCCACTTCTCTGAATTTTACCTTCCCCG
AGCTCATGGCTCCCACGTGCTGGCTTGCCCCTTGTAATCCGTCTGTGAAA
AGGTTCGTCTGTTATTGAAGGCTAAGTCTCTAACGTCGCAGTACAACTAT
ATCTGAGGTGGTGCAGAACCACCCCATGCCCCCATTGCTTTGCACGAAGT
TGGCCTAAGCATTTATTTTCCATCATTGCATCCTTCACCTGACAGCCCAA
ACACCCGCTCCTGTGGATCCATCCACTCCCGCGCCGGTGACTCCCACGCC
TAAGCCTGTTACCGGTGAGAGGGTCATATAAATGTTTTGTCTTAGTATCG
CGTAAGGCGTTCGCCGTCGTGGGACAAGGAAGCTGATTTTAGCTAATTTG
GACCGCTTCGTGCCTTACCTTTCGTCATCAGATCTGACGAACCTTCTGAG
TCCCATATTTTTTCCCCTTGAAAACGCTTGAATCGTGTTTCACACCTGTG
AACCCTTCTACGATATAGCGTCGATCATTTCTACACATAAACATACACTC
TGCAGTACTTCTACGACGGGATCAGTGTATAAGGAAACTTTATTGGGGAG
CAGGGCAAATAGGTTTGAGTTCATTCGAAGCGCTTCACGCCCCATTGATT
CGTATCTTGTCTGACGCGCCTTCTGATTCCCATCATTCTATACTCTCTAA
CTAAGAGCCCCAACACGTGCTAGACGTTTCTACGCTTGCGCAGTGGCTCC
GACACTTAAGCCTGTTCCAATTGAGAACCTAAGTTTTTACTTCATACAAT
ATTGTTCCTTTAAACATTAGCCCTCGTAGGTTAATGTGGATCTTTTTCGT
TTGTTCGGAACACCTCACGCGCAATCTCTTTGTTTCATGATCTTACACGC
CTTCTGTTTTCCGTCATTGCCACTCCCTTTGTCAACAGCCACCACCGAAG
CTCCTGTCGAACCAACTACGCCCGCGCCGGTGACTTCCACGCCTAAATCT
GTTTCCGGTGAGGTTGCATGCTGCTCTGTTTTTTATTTTCACTATCCCCC
CTTCTCATCACAGTCCGGCCGTCCGTTTCTCTCGATTAAACCTTTTCTGA
GCTCGTGCCTCCCACGTGCTGGCCTGTCTCATACAATCGTTCTGCTTGTG
GATTCGTATAGTATTGGTGGTCAAGTCTCTAACTTCGCAGTACAGCTGTT
TTTGAGATCGTTTAGAGCCCCTCATACCGGGCTAAACATTTCTTTGGGTC
GTTGTATCCTTGTCCCATCAGTCCCAACGCCTGCTCCTGTAGATCCATCC
ACGCCCGCGCCGGTGACTCCCACGCCTAAGCCTGTTTCTGGTGAGAGGAG
CATGTAAATGTGTTATCGTAGTACCGCGTAAGGCATTCACTGTCGCGGAA
CAAGGTAGATGGTTATAGCTAATTTGGACCGCTCCATGCCTTTCCTCTCG
TCATCAGGTTTGACAAGCCTGATGACTCCCACCTTTTTCTCCTCTTATAT
TAACACATCCATTTTTTTTTTTTATTCCAGGGAACCCTCCTCCAAGAGCG
CCGACCATTTCTACACATAGATATGCACTCTGCAGTGATTCTACGACGGA
ATCAGTTTTGTATAAGCAAAGCTTATAGGAAAGCAGGAAACTTGGATTGA
GTTCATCCAAAGCGCGTCACGTCCCATTGATTCGTATCGGGTCTGACGAT
CCTTTTGATTCCCATTATTGTACCCCTCTCTACCTAACAGCCCCAACACG
TGGTCCTATAGCCGCTTATACCCCCGCGCCGTTGTGCCGACGCCTAAGTC
TGCTCCCGTCGAGGAAATAATGTGGTGGTTCATATAGTATTGCTCCCTGA
AGCAATACTAGCCGTTGGGTAAGGTGGATGGTTTAAGTGTGTATTCGGAG
TGCCTCACGCTCGAGCAATTCTTTCAATGGCCTAACAAGCCTTTTGATTT
CCATCATTGTCACTATCTCTCGCTAACAGTCCCGACGGAGGCTCCTGTCG
AACCATCTACGCCTGCCCCGGTGACTCCCACGCCTAAGCCTGTTTTCGGT
GAGGCTTCATGAGGGAATTCATATTTTATCGCTTCATAAGGTATCCGCTG
TCACGGGACAACGAGAGTAGGTTTACACCATTAGGAGCGCTTCATGGTTC
GCCTATTCATCGCATGTTTCACGAGAGTTCTGATTCTGAGCATTTTCTTC
CCCTTATGACAACACGTCTGACGGACGCTCAAGTCGACCCTCCTGCGTTA
GCACCTGTGGCGCTCACGCACCGACCTGTCCCCTGTAATGAGCCCTCTAG
GGTATTCGGATCATTTTAACAACCAAAGCTTCTAACGTTGCTGGACAATA
TAATGCGAGCTCATTAGAAGCGCCCCATACCTTAACACTCCACAAATAGT
GTGACGTCGGCTACAAGATTCAAATAGTATTGAATGCTAAGCCTCTAACG
CTGCAGTACAGCTATATCTAAAGTTGTTTAGAGCCCCCCGTACCCCCATT
GCTTCTCACCAAGTTGGCCTAAGCATTTGCTTCCCATCATTGTATCCTTC
ACCCGTCAGCCGAAACACCTGCTACTGTGGATCCACCCACGCCCGCGCCG
GTAACCCCGACGCCTAAGCCTGTTACCGGTGAGAAA
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Coding sequence (CDS) from alignment at H-elongata_contig15474:3940..7725+

>mRNA_H-elongata_contig15474.3596.1 ID=mRNA_H-elongata_contig15474.3596.1|Name=mRNA_H-elongata_contig15474.3596.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=426bp|location=Sequence derived from alignment at H-elongata_contig15474:3940..7725+ (Himanthalia elongata Himel1 dioecious)
CCAACGCCTGCTCCTGTGGATCCATCCACACCTGCACCGGTAACTCCCAC
ACCTGAGCCTGTTACTGCCAACGCCTGCTCCTGTGGATCCATCCACACCT
GCACCGGTAACTCCCACACCTGAGCCTGTTACTGTCCCAACGCCTGCTCC
TGTAGATCCATCCACGCCCGCGCCGGTGACTCCCACGCCTAAGCCTGTTT
CTGTCCCAACGCCTGCTCCTGTAGATCCATCCACGCCCGCGCCGGTGACT
CCCACGCCTAAGCCTGTTTCTGCCGAAACACCTGCTACTGTGGATCCACC
CACGCCCGCGCCGGTAACCCCGACGCCTAAGCCTGTTACCGGTGAGAAAC
CGAAACACCTGCTACTGTGGATCCACCCACGCCCGCGCCGGTAACCCCGA
CGCCTAAGCCTGTTACCGGTGAGAAA
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