mRNA_H-elongata_contig154537.3587.1 (mRNA) Himanthalia elongata Himel1 dioecious
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Overview
Homology
BLAST of mRNA_H-elongata_contig154537.3587.1 vs. uniprot
Match: A0A6H5LDC1_9PHAE (SAM_MT_RSMB_NOP domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5LDC1_9PHAE) HSP 1 Score: 151 bits (381), Expect = 1.410e-40 Identity = 70/88 (79.55%), Postives = 78/88 (88.64%), Query Frame = 1
Query: 1 VKGWFGIGDEFPYERLYTRKAGSKVVSYVAPATKRYLLDDPAGSRIQMVHAGVKVFERNSNARSTIEFRICQEGLDVVLPCMTKRVTR 264
+K WFG+ D+FP +RLYTRKAGS+ +SYVAPATKRYLLDDPAGSR+QMVH GVKVFERNS AR IEFR+CQEGL VVLP MTKRVTR
Sbjct: 740 IKTWFGMRDDFPVDRLYTRKAGSRTISYVAPATKRYLLDDPAGSRLQMVHTGVKVFERNSQARCAIEFRVCQEGLGVVLPYMTKRVTR 827
BLAST of mRNA_H-elongata_contig154537.3587.1 vs. uniprot
Match: D8LLJ3_ECTSI (SAM_MT_RSMB_NOP domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LLJ3_ECTSI) HSP 1 Score: 150 bits (380), Expect = 1.480e-40 Identity = 69/88 (78.41%), Postives = 78/88 (88.64%), Query Frame = 1
Query: 1 VKGWFGIGDEFPYERLYTRKAGSKVVSYVAPATKRYLLDDPAGSRIQMVHAGVKVFERNSNARSTIEFRICQEGLDVVLPCMTKRVTR 264
+K WFG+ D+FP +RLYTRKAGS+ +SYVAPATKRYLLDDPAGSR+QM+H GVKVFERNS AR IEFR+CQEGL VVLP MTKRVTR
Sbjct: 530 IKTWFGMRDDFPVDRLYTRKAGSRTISYVAPATKRYLLDDPAGSRLQMIHTGVKVFERNSQARCAIEFRVCQEGLGVVLPYMTKRVTR 617
BLAST of mRNA_H-elongata_contig154537.3587.1 vs. uniprot
Match: D8LYS4_BLAHO (SAM_MT_RSMB_NOP domain-containing protein n=1 Tax=Blastocystis hominis TaxID=12968 RepID=D8LYS4_BLAHO) HSP 1 Score: 70.1 bits (170), Expect = 4.450e-12 Identity = 33/86 (38.37%), Postives = 53/86 (61.63%), Query Frame = 1
Query: 1 VKGWFGIGDEFPYERLYTRKAGSKVVSYVAPATKRYLLDDPAGSRIQMVHAGVKVFERNSNARSTIEFRICQEGLDVVLPCMTKRV 258
++ ++GI D F ++ +Y+R A ++ YV P L + R+++V+ G+K+FE NS + +RICQEGL V+ P MTKRV
Sbjct: 544 LRAFYGISDAFDWDLIYSRSANHHILLYVDPVVNALCLRSRSAKRLKVVNTGLKLFEYNSR-KCECAYRICQEGLPVLRPFMTKRV 628
BLAST of mRNA_H-elongata_contig154537.3587.1 vs. uniprot
Match: W2QBX4_PHYPN (SAM_MT_RSMB_NOP domain-containing protein n=11 Tax=Phytophthora TaxID=4783 RepID=W2QBX4_PHYPN) HSP 1 Score: 66.2 bits (160), Expect = 1.000e-10 Identity = 33/85 (38.82%), Postives = 51/85 (60.00%), Query Frame = 1
Query: 1 VKGWFGIGDEFPYERLYTRKAGSKVVSYVAPATKRYLLDDPAGSRIQMVHAGVKVFERNSNARSTIEFRICQEGLDVVLPCMTKR 255
+K ++GI D FP+E LY+R G+ V V P+ + +L AG ++ G++VF R A + FR+ +EGLD +LP +TKR
Sbjct: 518 IKEFYGIADSFPHENLYSRSVGTSSVCLVNPSIREAIL---AGEHPHILDTGLRVFARVQAAGKRLWFRLTEEGLDQMLPFITKR 599
BLAST of mRNA_H-elongata_contig154537.3587.1 vs. uniprot
Match: A0A8K1C4V8_PYTOL (Uncharacterized protein n=1 Tax=Pythium oligandrum TaxID=41045 RepID=A0A8K1C4V8_PYTOL) HSP 1 Score: 65.5 bits (158), Expect = 1.880e-10 Identity = 30/85 (35.29%), Postives = 51/85 (60.00%), Query Frame = 1
Query: 1 VKGWFGIGDEFPYERLYTRKAGSKVVSYVAPATKRYLLDDPAGSRIQMVHAGVKVFERNSNARSTIEFRICQEGLDVVLPCMTKR 255
+K FG+ EF +L TR +K V++V + LL++ ++++V+ G+K+FERN + +R+CQ GL + LP +TKR
Sbjct: 542 IKNCFGLTPEFSSAQLITRSDEAKAVTFVTKSITMELLEEMKAKKLKVVYTGIKMFERNDLPDGSKTYRLCQMGLSMALPFVTKR 626
BLAST of mRNA_H-elongata_contig154537.3587.1 vs. uniprot
Match: A0A7S4PHY5_GUITH (Hypothetical protein (Fragment) n=1 Tax=Guillardia theta TaxID=55529 RepID=A0A7S4PHY5_GUITH) HSP 1 Score: 63.2 bits (152), Expect = 8.550e-10 Identity = 32/83 (38.55%), Postives = 53/83 (63.86%), Query Frame = 1
Query: 10 WFGIGDEFPYERLYTRKAGSKVVSYVAPATKRYLLDDPAGSRIQMVHAGVKVFERNSNARSTIEFRICQEGLDVVLPCMTKRV 258
++GI ++FP ++L++ V +V+ K+ L D G ++ VHAGVK+FERNS + E+R+ QEG+ ++P M+KRV
Sbjct: 70 FYGIKEDFPADQLFSSSETGNKVYFVSAEVKQMLGADIRG-QLHTVHAGVKMFERNSAKGNIFEYRLRQEGVPFLMPYMSKRV 151
BLAST of mRNA_H-elongata_contig154537.3587.1 vs. uniprot
Match: A0A0P1AJD8_PLAHL (Trna (Cytosine-5-)-methyltransferase n=1 Tax=Plasmopara halstedii TaxID=4781 RepID=A0A0P1AJD8_PLAHL) HSP 1 Score: 62.4 bits (150), Expect = 2.310e-9 Identity = 30/84 (35.71%), Postives = 49/84 (58.33%), Query Frame = 1
Query: 1 VKGWFGIGDEFPYERLYTRKAGSKVVSYVAPATKRYLLDDPAGSRIQMVHAGVKVFERNSNARSTIEFRICQEGLDVVLPCMTK 252
V+ ++ I F E+L TR +K V++V + LL++ ++Q+V+AG+K+FERN +R+CQ GL +LP M K
Sbjct: 519 VRDYYDITTTFSAEQLITRSEDAKSVTFVTESITMALLEEMKRKKMQVVYAGLKMFERNETTEGGKVYRVCQAGLPHILPFMNK 602
BLAST of mRNA_H-elongata_contig154537.3587.1 vs. uniprot
Match: D0NVM2_PHYIT (tRNA (Cytosine-5-)-methyltransferase NSUN2-like protein n=2 Tax=Phytophthora infestans TaxID=4787 RepID=D0NVM2_PHYIT) HSP 1 Score: 62.0 bits (149), Expect = 3.090e-9 Identity = 30/85 (35.29%), Postives = 52/85 (61.18%), Query Frame = 1
Query: 1 VKGWFGIGDEFPYERLYTRKAGSKVVSYVAPATKRYLLDDPAGSRIQMVHAGVKVFERNSNARSTIEFRICQEGLDVVLPCMTKR 255
+K ++GI D+FPYE LY+R G+ V V+ + + +L AG + ++ G++VF R + FR+ ++GL+ +LP +TKR
Sbjct: 474 IKEFYGIADDFPYENLYSRSEGTSSVCVVSSSIRGAIL---AGEQPHILDTGLRVFARVQAVGKRLWFRLTEDGLEQMLPYITKR 555
BLAST of mRNA_H-elongata_contig154537.3587.1 vs. uniprot
Match: A0A6A3MPZ1_9STRA (SAM_MT_RSMB_NOP domain-containing protein n=4 Tax=Phytophthora TaxID=4783 RepID=A0A6A3MPZ1_9STRA) HSP 1 Score: 60.8 bits (146), Expect = 7.880e-9 Identity = 33/87 (37.93%), Postives = 51/87 (58.62%), Query Frame = 1
Query: 1 VKGWFGIGDEFPYERLYTRKAGSKVVSYVAPATKRYLLDDPAGSRIQMVHAGVKVFERNSNARSTIEFRICQEGLDVVLPCMTKRVT 261
+K ++GI D FP+E LY+R G+ V V P+ + +L AG ++ G++VF R A + FR +EGL+ +LP +TKR T
Sbjct: 492 IKEFYGISDRFPHENLYSRSEGTASVCLVNPSIREAIL---AGEHANILDTGLRVFAR-VQAAGKLVFRPTEEGLERLLPFITKRKT 574
BLAST of mRNA_H-elongata_contig154537.3587.1 vs. uniprot
Match: A0A1W0A149_9STRA (tRNA (Cytosine-5-)-methyltransferase NSUN2 n=1 Tax=Thraustotheca clavata TaxID=74557 RepID=A0A1W0A149_9STRA) HSP 1 Score: 60.1 bits (144), Expect = 1.470e-8 Identity = 33/85 (38.82%), Postives = 55/85 (64.71%), Query Frame = 1
Query: 1 VKGWFGIGDEFPYERLYTRKAGSKVVSYVAPATKRYLLDDPAGSRIQMVHAGVKVFERNSNARSTIEFRICQEGLDVVLPCMTKR 255
++ ++G+ EF +ERL+ R G+ +SYV+ A ++ L AG+ + +V+ GVKVF + + S FR QEGL++++P MTKR
Sbjct: 514 IQEFYGLTPEFRHERLFARSKGAATLSYVSHAVQQACL---AGNALNLVNTGVKVFVKVTTG-SHKGFRPSQEGLELLVPHMTKR 594 The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig154537.3587.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 21
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-elongata_contig154537.3587.1 >prot_H-elongata_contig154537.3587.1 ID=prot_H-elongata_contig154537.3587.1|Name=mRNA_H-elongata_contig154537.3587.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=89bp VKGWFGIGDEFPYERLYTRKAGSKVVSYVAPATKRYLLDDPAGSRIQMVHback to top mRNA from alignment at H-elongata_contig154537:917..1526- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-elongata_contig154537.3587.1 ID=mRNA_H-elongata_contig154537.3587.1|Name=mRNA_H-elongata_contig154537.3587.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=610bp|location=Sequence derived from alignment at H-elongata_contig154537:917..1526- (Himanthalia elongata Himel1 dioecious)back to top Coding sequence (CDS) from alignment at H-elongata_contig154537:917..1526- >mRNA_H-elongata_contig154537.3587.1 ID=mRNA_H-elongata_contig154537.3587.1|Name=mRNA_H-elongata_contig154537.3587.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=534bp|location=Sequence derived from alignment at H-elongata_contig154537:917..1526- (Himanthalia elongata Himel1 dioecious)back to top |